Wall clock time and date at job start Mon Mar 30 2020 23:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48498 * 109.47121 * 274.34512 * 3 2 1 5 5 H 1.48494 * 109.47249 * 34.34729 * 3 2 1 6 6 H 1.48498 * 109.46937 * 154.34985 * 3 2 1 7 7 C 1.38815 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00163 * 162.61548 * 7 2 1 9 9 N 1.36943 * 119.99581 * 342.60833 * 7 2 1 10 10 C 1.46922 * 120.63253 * 332.29987 * 9 7 2 11 11 C 1.53190 * 108.77625 * 233.58592 * 10 9 7 12 12 C 1.53045 * 109.31268 * 305.36643 * 11 10 9 13 13 C 1.53039 * 109.53823 * 61.36420 * 12 11 10 14 14 H 1.09001 * 109.50031 * 58.61835 * 13 12 11 15 15 C 1.52996 * 109.49695 * 178.68454 * 13 12 11 16 16 N 1.46498 * 109.47270 * 184.99585 * 15 13 12 17 17 C 1.34773 * 120.00336 * 180.02562 * 16 15 13 18 18 O 1.21615 * 120.00200 * 359.97438 * 17 16 15 19 19 C 1.47106 * 120.00424 * 180.02562 * 17 16 15 20 20 C 1.32601 * 124.62530 * 180.02562 * 19 17 16 21 21 C 1.51113 * 110.76449 * 180.02562 * 20 19 17 22 22 C 1.54577 * 104.83724 * 16.59469 * 21 20 19 23 23 C 1.51119 * 124.61556 * 359.72209 * 19 17 16 24 24 C 1.46922 * 120.62696 * 152.01846 * 9 7 2 25 25 H 0.96992 * 120.00549 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.58625 * 353.37163 * 10 9 7 27 27 H 1.09000 * 109.58608 * 113.65606 * 10 9 7 28 28 H 1.09000 * 109.49828 * 65.31336 * 11 10 9 29 29 H 1.09006 * 109.50348 * 185.38044 * 11 10 9 30 30 H 1.08998 * 109.45947 * 181.38309 * 12 11 10 31 31 H 1.08997 * 109.45500 * 301.35582 * 12 11 10 32 32 H 1.08997 * 109.47268 * 304.99690 * 15 13 12 33 33 H 1.09008 * 109.47112 * 65.00147 * 15 13 12 34 34 H 0.97008 * 119.99698 * 0.02562 * 16 15 13 35 35 H 1.08008 * 124.61921 * 0.02562 * 20 19 17 36 36 H 1.08995 * 110.36728 * 135.43790 * 21 20 19 37 37 H 1.09002 * 110.36328 * 257.76214 * 21 20 19 38 38 H 1.09002 * 110.97721 * 93.07503 * 22 21 20 39 39 H 1.08999 * 110.98625 * 216.87509 * 22 21 20 40 40 H 1.08994 * 110.36453 * 282.24403 * 23 19 17 41 41 H 1.09001 * 110.36666 * 44.56537 * 23 19 17 42 42 H 1.09004 * 109.58771 * 246.19814 * 24 9 7 43 43 H 1.08998 * 109.58854 * 6.63257 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4057 2.0995 -1.3960 5 1 1.4965 2.6244 0.7899 6 1 3.5906 1.4154 0.6061 7 6 2.0103 -1.2021 -0.0005 8 1 3.0532 -1.2233 -0.2800 9 7 1.3726 -2.3611 0.3534 10 6 0.2288 -2.3347 1.2753 11 6 0.5025 -3.3053 2.4285 12 6 0.8197 -4.6903 1.8599 13 6 2.0747 -4.6104 0.9876 14 1 2.9092 -4.2413 1.5838 15 6 2.4097 -6.0016 0.4463 16 7 3.6754 -5.9476 -0.2894 17 6 4.1719 -7.0635 -0.8591 18 8 3.5696 -8.1155 -0.7621 19 6 5.4432 -7.0094 -1.5974 20 6 6.0138 -8.0480 -2.1924 21 6 7.3086 -7.6404 -2.8562 22 6 7.6663 -6.2767 -2.2222 23 6 6.2735 -5.7610 -1.7867 24 6 1.8152 -3.6539 -0.1863 25 1 -0.4850 0.8399 -0.0004 26 1 0.1001 -1.3265 1.6691 27 1 -0.6743 -2.6384 0.7459 28 1 1.3517 -2.9480 3.0109 29 1 -0.3776 -3.3672 3.0687 30 1 0.9907 -5.3887 2.6790 31 1 -0.0199 -5.0363 1.2570 32 1 2.5016 -6.7021 1.2763 33 1 1.6148 -6.3325 -0.2222 34 1 4.1561 -5.1085 -0.3666 35 1 5.6083 -9.0490 -2.2013 36 1 8.0888 -8.3722 -2.6473 37 1 7.1661 -7.5329 -3.9315 38 1 8.3254 -6.4064 -1.3638 39 1 8.1136 -5.6092 -2.9586 40 1 5.8391 -5.1305 -2.5625 41 1 6.3508 -5.2110 -0.8488 42 1 1.0392 -4.0654 -0.8318 43 1 2.7335 -3.5165 -0.7571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023308006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:39 Heat of formation + Delta-G solvation = -19.061222 kcal Electronic energy + Delta-G solvation = -21831.397466 eV Core-core repulsion = 18683.359752 eV Total energy + Delta-G solvation = -3148.037715 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.98440 -38.17448 -37.44741 -34.79612 -32.99951 -30.64687 -30.44172 -29.39085 -28.48879 -25.48528 -25.21972 -22.39524 -21.87268 -21.14685 -20.61488 -19.31304 -18.50526 -17.24292 -16.63246 -15.98642 -15.64479 -15.07784 -14.85060 -14.39800 -14.13142 -13.65031 -13.43425 -13.01456 -12.89314 -12.78844 -12.37425 -12.28615 -12.17534 -12.07712 -11.84326 -11.45933 -11.36314 -11.27317 -11.03440 -10.71331 -10.50196 -10.25160 -10.18984 -9.97993 -9.86210 -9.55781 -9.42446 -9.15023 -8.82767 -8.47931 -6.68994 -5.80909 -3.23501 1.31655 3.33817 3.34894 3.37054 3.42498 3.44258 4.31967 4.38997 4.46533 4.77208 4.89855 5.07529 5.12388 5.29397 5.41560 5.43714 5.47525 5.48723 5.57559 5.59324 5.62784 5.74065 5.83412 5.94236 5.96820 5.99533 6.18209 6.24546 6.32837 6.36925 6.39925 6.54301 6.58841 6.70247 6.77554 6.85549 6.95971 7.38898 7.64955 7.66813 7.76691 8.32642 8.42538 9.18870 9.82588 10.39553 11.27335 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017574 B = 0.004316 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.841144 B = 6485.688207 C = 7812.474275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.169 3.831 11 C -0.141 4.141 12 C -0.100 4.100 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.126 3.874 16 N -0.717 5.717 17 C 0.562 3.438 18 O -0.551 6.551 19 C -0.189 4.189 20 C -0.081 4.081 21 C -0.106 4.106 22 C -0.123 4.123 23 C -0.094 4.094 24 C 0.154 3.846 25 H 0.254 0.746 26 H 0.086 0.914 27 H 0.017 0.983 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.403 0.597 35 H 0.136 0.864 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.019 0.981 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.635 -12.107 -1.474 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.180 4.180 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.003 3.997 16 N -0.367 5.367 17 C 0.350 3.650 18 O -0.431 6.431 19 C -0.192 4.192 20 C -0.101 4.101 21 C -0.143 4.143 22 C -0.160 4.160 23 C -0.132 4.132 24 C 0.027 3.973 25 H 0.064 0.936 26 H 0.104 0.896 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.239 0.761 35 H 0.154 0.846 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.037 0.963 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.070 -12.655 -1.395 16.872 hybrid contribution 0.497 1.278 -0.042 1.372 sum 11.567 -11.377 -1.437 16.288 Atomic orbital electron populations 1.70038 1.05294 1.25499 1.53721 1.25034 0.95250 0.98400 1.00878 0.86312 0.79226 0.83802 0.77613 1.21468 1.21544 1.20435 1.19157 0.92644 0.84886 1.41703 0.91762 1.44059 1.36040 1.01246 1.50045 1.20797 0.88513 0.98412 0.87976 1.22166 1.00094 0.95937 0.99846 1.21341 0.96743 0.97735 0.97958 1.22034 0.98826 0.93558 0.99414 0.90869 1.21478 0.84791 0.98014 0.95460 1.45990 1.24744 1.11507 1.54502 1.17987 0.84566 0.83711 0.78768 1.90769 1.61014 1.30042 1.61245 1.21903 0.96600 0.97532 1.03131 1.24007 0.94996 0.98472 0.92598 1.21474 0.95158 0.97418 1.00278 1.22461 0.96603 0.96147 1.00803 1.21324 0.94078 0.95443 1.02308 1.20986 0.97446 0.86843 0.92024 0.93627 0.89552 0.96457 0.92755 0.93178 0.93437 0.92470 0.91965 0.91549 0.76122 0.84587 0.90391 0.89712 0.90830 0.90491 0.89853 0.90645 0.96310 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.91 11.19 55.49 0.62 -25.29 16 2 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 8 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 9 N -0.59 -14.48 2.99 -172.06 -0.51 -14.99 16 10 C 0.17 3.98 5.31 -3.71 -0.02 3.96 16 11 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 12 C -0.10 -1.65 5.16 -26.69 -0.14 -1.79 16 13 C -0.12 -1.95 2.39 -90.27 -0.22 -2.17 16 14 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 15 C 0.13 1.91 5.06 -4.05 -0.02 1.89 16 16 N -0.72 -10.14 5.32 -61.49 -0.33 -10.46 16 17 C 0.56 8.45 7.79 -12.66 -0.10 8.35 16 18 O -0.55 -10.13 16.77 5.26 0.09 -10.04 16 19 C -0.19 -2.25 6.09 -102.72 -0.63 -2.88 16 20 C -0.08 -0.84 10.43 -36.01 -0.38 -1.22 16 21 C -0.11 -0.80 6.80 -26.85 -0.18 -0.99 16 22 C -0.12 -0.93 7.17 -24.97 -0.18 -1.11 16 23 C -0.09 -0.90 6.04 -26.74 -0.16 -1.06 16 24 C 0.15 3.10 5.63 -3.48 -0.02 3.08 16 25 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.09 2.28 6.04 -51.93 -0.31 1.97 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 34 H 0.40 5.16 6.72 -40.82 -0.27 4.89 16 35 H 0.14 1.42 8.03 -52.48 -0.42 1.00 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 0.97 7.16 -51.93 -0.37 0.60 16 LS Contribution 341.59 15.07 5.15 5.15 Total: -1.00 -31.09 341.59 -9.70 -40.79 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.26 Total: 2.29 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.43 Total: -3.69 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.22 Total: -50.75 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.09 -9.70 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023308006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.728 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds