Wall clock time and date at job start Mon Mar 30 2020 23:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99668 * 2 1 4 4 H 1.48498 * 109.47121 * 274.34512 * 3 2 1 5 5 H 1.48494 * 109.47249 * 34.34729 * 3 2 1 6 6 H 1.48498 * 109.46937 * 154.34985 * 3 2 1 7 7 C 1.38815 * 120.00321 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00163 * 162.61548 * 7 2 1 9 9 N 1.36943 * 119.99581 * 342.60833 * 7 2 1 10 10 C 1.46922 * 120.63253 * 332.29987 * 9 7 2 11 11 C 1.53190 * 108.77625 * 233.58592 * 10 9 7 12 12 C 1.53045 * 109.31268 * 305.36643 * 11 10 9 13 13 C 1.53039 * 109.53823 * 61.36420 * 12 11 10 14 14 H 1.09001 * 109.50031 * 58.61835 * 13 12 11 15 15 C 1.52996 * 109.49695 * 178.68454 * 13 12 11 16 16 N 1.46498 * 109.47270 * 184.99585 * 15 13 12 17 17 C 1.34773 * 120.00336 * 180.02562 * 16 15 13 18 18 O 1.21615 * 120.00200 * 359.97438 * 17 16 15 19 19 C 1.47106 * 120.00424 * 180.02562 * 17 16 15 20 20 C 1.32601 * 124.62530 * 180.02562 * 19 17 16 21 21 C 1.51113 * 110.76449 * 180.02562 * 20 19 17 22 22 C 1.54577 * 104.83724 * 16.59469 * 21 20 19 23 23 C 1.51119 * 124.61556 * 359.72209 * 19 17 16 24 24 C 1.46922 * 120.62696 * 152.01846 * 9 7 2 25 25 H 0.96992 * 120.00549 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.58625 * 353.37163 * 10 9 7 27 27 H 1.09000 * 109.58608 * 113.65606 * 10 9 7 28 28 H 1.09000 * 109.49828 * 65.31336 * 11 10 9 29 29 H 1.09006 * 109.50348 * 185.38044 * 11 10 9 30 30 H 1.08998 * 109.45947 * 181.38309 * 12 11 10 31 31 H 1.08997 * 109.45500 * 301.35582 * 12 11 10 32 32 H 1.08997 * 109.47268 * 304.99690 * 15 13 12 33 33 H 1.09008 * 109.47112 * 65.00147 * 15 13 12 34 34 H 0.97008 * 119.99698 * 0.02562 * 16 15 13 35 35 H 1.08008 * 124.61921 * 0.02562 * 20 19 17 36 36 H 1.08995 * 110.36728 * 135.43790 * 21 20 19 37 37 H 1.09002 * 110.36328 * 257.76214 * 21 20 19 38 38 H 1.09002 * 110.97721 * 93.07503 * 22 21 20 39 39 H 1.08999 * 110.98625 * 216.87509 * 22 21 20 40 40 H 1.08994 * 110.36453 * 282.24403 * 23 19 17 41 41 H 1.09001 * 110.36666 * 44.56537 * 23 19 17 42 42 H 1.09004 * 109.58771 * 246.19814 * 24 9 7 43 43 H 1.08998 * 109.58854 * 6.63257 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4057 2.0995 -1.3960 5 1 1.4965 2.6244 0.7899 6 1 3.5906 1.4154 0.6061 7 6 2.0103 -1.2021 -0.0005 8 1 3.0532 -1.2233 -0.2800 9 7 1.3726 -2.3611 0.3534 10 6 0.2288 -2.3347 1.2753 11 6 0.5025 -3.3053 2.4285 12 6 0.8197 -4.6903 1.8599 13 6 2.0747 -4.6104 0.9876 14 1 2.9092 -4.2413 1.5838 15 6 2.4097 -6.0016 0.4463 16 7 3.6754 -5.9476 -0.2894 17 6 4.1719 -7.0635 -0.8591 18 8 3.5696 -8.1155 -0.7621 19 6 5.4432 -7.0094 -1.5974 20 6 6.0138 -8.0480 -2.1924 21 6 7.3086 -7.6404 -2.8562 22 6 7.6663 -6.2767 -2.2222 23 6 6.2735 -5.7610 -1.7867 24 6 1.8152 -3.6539 -0.1863 25 1 -0.4850 0.8399 -0.0004 26 1 0.1001 -1.3265 1.6691 27 1 -0.6743 -2.6384 0.7459 28 1 1.3517 -2.9480 3.0109 29 1 -0.3776 -3.3672 3.0687 30 1 0.9907 -5.3887 2.6790 31 1 -0.0199 -5.0363 1.2570 32 1 2.5016 -6.7021 1.2763 33 1 1.6148 -6.3325 -0.2222 34 1 4.1561 -5.1085 -0.3666 35 1 5.6083 -9.0490 -2.2013 36 1 8.0888 -8.3722 -2.6473 37 1 7.1661 -7.5329 -3.9315 38 1 8.3254 -6.4064 -1.3638 39 1 8.1136 -5.6092 -2.9586 40 1 5.8391 -5.1305 -2.5625 41 1 6.3508 -5.2110 -0.8488 42 1 1.0392 -4.0654 -0.8318 43 1 2.7335 -3.5165 -0.7571 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023308006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:38 Heat of formation + Delta-G solvation = -37.414894 kcal Electronic energy + Delta-G solvation = -21832.193341 eV Core-core repulsion = 18683.359752 eV Total energy + Delta-G solvation = -3148.833590 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.08156 -39.50151 -38.55549 -36.27706 -34.68087 -32.31703 -32.07862 -30.26566 -29.26173 -27.26375 -26.70739 -23.89859 -23.25974 -22.38470 -21.51483 -20.83356 -19.63043 -18.64536 -18.07752 -17.03720 -16.85384 -16.65927 -16.13598 -15.78327 -15.46183 -15.28317 -15.00951 -14.52336 -14.05146 -13.82306 -13.73170 -13.65662 -13.54395 -13.01716 -12.95863 -12.84918 -12.58285 -12.49088 -12.26727 -12.05978 -11.98152 -11.97352 -11.83798 -11.59406 -11.36731 -11.11415 -10.94035 -10.52746 -10.19434 -9.80829 -8.68010 -7.86468 -5.32199 0.38833 1.47300 1.49296 1.58949 2.23813 2.28158 2.51835 3.28543 3.53541 3.59457 3.66885 3.97793 3.98976 4.03846 4.12329 4.22759 4.32934 4.39975 4.55134 4.58757 4.73702 4.79526 4.83346 4.86666 4.88104 4.91894 4.98910 5.00546 5.09582 5.18939 5.21948 5.31741 5.35021 5.37436 5.40156 5.48646 5.56247 5.57273 5.66945 5.78192 6.39119 6.53501 7.15164 7.18365 7.86332 8.38708 9.19897 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017574 B = 0.004316 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.841144 B = 6485.688207 C = 7812.474275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.966 3.034 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.263 4.263 8 H 0.071 0.929 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.129 4.129 12 C -0.097 4.097 13 C -0.099 4.099 14 H 0.077 0.923 15 C 0.136 3.864 16 N -0.713 5.713 17 C 0.558 3.442 18 O -0.592 6.592 19 C -0.217 4.217 20 C -0.068 4.068 21 C -0.103 4.103 22 C -0.118 4.118 23 C -0.093 4.093 24 C 0.153 3.847 25 H 0.249 0.751 26 H 0.052 0.948 27 H -0.008 1.008 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.410 0.590 35 H 0.131 0.869 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.005 0.995 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.054 -12.863 -1.308 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.794 3.206 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.393 4.393 8 H 0.089 0.911 9 N -0.332 5.332 10 C 0.047 3.953 11 C -0.168 4.168 12 C -0.135 4.135 13 C -0.120 4.120 14 H 0.096 0.904 15 C 0.012 3.988 16 N -0.363 5.363 17 C 0.348 3.652 18 O -0.475 6.475 19 C -0.219 4.219 20 C -0.088 4.088 21 C -0.139 4.139 22 C -0.156 4.156 23 C -0.130 4.130 24 C 0.027 3.973 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.010 0.990 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.247 0.753 35 H 0.149 0.851 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.023 0.977 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.521 -13.416 -1.227 19.087 hybrid contribution -0.270 1.438 -0.152 1.471 sum 13.250 -11.979 -1.380 17.915 Atomic orbital electron populations 1.70201 1.06825 1.25800 1.55457 1.25804 0.95963 1.01575 1.01315 0.85282 0.78330 0.79624 0.77344 1.21359 1.22104 1.19092 1.19552 0.93116 0.85943 1.40666 0.91124 1.44330 1.36031 1.02146 1.50713 1.20638 0.87616 0.97876 0.89185 1.21994 1.00998 0.95837 0.98002 1.21341 0.96467 0.96861 0.98872 1.21791 0.99125 0.93268 0.97791 0.90445 1.21297 0.85020 0.96927 0.95583 1.45946 1.24364 1.11819 1.54164 1.18502 0.85301 0.83054 0.78379 1.90739 1.62457 1.31376 1.62940 1.21911 0.96078 0.99420 1.04540 1.24347 0.95710 0.97845 0.90874 1.21550 0.93864 0.97879 1.00647 1.22489 0.95399 0.96201 1.01464 1.21349 0.94877 0.94382 1.02422 1.21099 0.97002 0.85827 0.93382 0.94195 0.92928 0.99027 0.92738 0.91194 0.90140 0.92704 0.90983 0.92620 0.75290 0.85141 0.88440 0.88340 0.90175 0.88936 0.90046 0.90552 0.97745 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.43 11.19 21.65 0.24 -55.19 16 2 C -0.05 -2.84 4.91 84.86 0.42 -2.42 16 3 Si 0.97 44.10 29.59 68.60 2.03 46.13 16 4 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.26 -14.14 9.58 84.03 0.81 -13.34 16 8 H 0.07 3.63 7.89 -2.92 -0.02 3.61 16 9 N -0.61 -30.10 2.99 -698.26 -2.09 -32.18 16 10 C 0.17 8.31 5.31 86.36 0.46 8.77 16 11 C -0.13 -4.71 6.08 30.67 0.19 -4.53 16 12 C -0.10 -3.03 5.16 30.62 0.16 -2.87 16 13 C -0.10 -3.15 2.39 -10.57 -0.03 -3.17 16 14 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 15 C 0.14 3.93 5.06 86.38 0.44 4.37 16 16 N -0.71 -19.50 5.32 -466.72 -2.48 -21.98 16 17 C 0.56 16.50 7.79 86.57 0.67 17.18 16 18 O -0.59 -21.78 16.77 -4.08 -0.07 -21.85 16 19 C -0.22 -4.92 6.09 -18.56 -0.11 -5.03 16 20 C -0.07 -1.30 10.43 24.66 0.26 -1.05 16 21 C -0.10 -1.24 6.80 30.52 0.21 -1.03 16 22 C -0.12 -1.43 7.17 31.74 0.23 -1.20 16 23 C -0.09 -1.60 6.04 30.59 0.18 -1.42 16 24 C 0.15 6.13 5.63 86.51 0.49 6.62 16 25 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 26 H 0.05 2.87 6.04 -2.39 -0.01 2.86 16 27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.41 10.04 6.72 -92.70 -0.62 9.41 16 35 H 0.13 2.60 8.03 -2.91 -0.02 2.58 16 36 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.26 7.82 -2.39 -0.02 1.25 16 42 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.06 2.14 7.16 -2.39 -0.02 2.13 16 Total: -1.00 -68.35 341.59 2.35 -66.00 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.36 Total: 18.20 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 4.36 Total: 0.88 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -4.33 Total: -109.35 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.07 Total: -21.85 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -68.35 2.35 -66.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023308006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.583 kcal (2) G-P(sol) polarization free energy of solvation -68.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds