Wall clock time and date at job start Tue Mar 31 2020 00:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48504 * 109.47149 * 239.99728 * 3 2 1 5 5 H 1.48501 * 109.47160 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47356 * 119.99864 * 3 2 1 7 7 C 1.38806 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00207 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00418 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00787 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.40557 * 32.52777 * 10 9 7 12 12 C 1.54839 * 110.45711 * 269.92754 * 10 9 7 13 13 C 1.55810 * 102.28711 * 202.33739 * 12 10 9 14 14 C 1.54147 * 103.88264 * 39.44140 * 13 12 10 15 15 H 1.09002 * 112.65571 * 97.99966 * 14 13 12 16 16 C 1.54462 * 108.80045 * 222.72190 * 14 13 12 17 17 N 1.48332 * 104.30967 * 138.54587 * 16 14 13 18 18 C 1.34780 * 128.20071 * 138.22740 * 17 16 14 19 19 O 1.21281 * 120.00192 * 180.02562 * 18 17 16 20 20 C 1.50698 * 119.99874 * 0.02699 * 18 17 16 21 21 C 1.53003 * 109.47308 * 179.97438 * 20 18 17 22 22 C 1.53000 * 117.49792 * 175.00072 * 21 20 18 23 23 C 1.53002 * 60.02940 * 107.48056 * 22 21 20 24 24 C 1.48339 * 103.60332 * 318.49052 * 17 16 14 25 25 C 1.54042 * 104.51844 * 41.47204 * 24 17 16 26 26 H 1.08997 * 111.75413 * 96.51840 * 25 24 17 27 27 H 0.97007 * 120.00380 * 0.02562 * 1 2 3 28 28 H 0.97005 * 119.99730 * 359.97438 * 9 7 2 29 29 H 1.08997 * 110.76068 * 321.36316 * 12 10 9 30 30 H 1.08998 * 110.75563 * 84.73973 * 12 10 9 31 31 H 1.09004 * 111.80325 * 280.32363 * 13 12 10 32 32 H 1.09002 * 109.55501 * 157.46472 * 13 12 10 33 33 H 1.09007 * 110.46533 * 19.83728 * 16 14 13 34 34 H 1.08999 * 110.57853 * 257.31032 * 16 14 13 35 35 H 1.09011 * 109.47086 * 59.99709 * 20 18 17 36 36 H 1.09003 * 109.47674 * 300.00122 * 20 18 17 37 37 H 1.08999 * 115.55832 * 29.31689 * 21 20 18 38 38 H 1.09002 * 117.49833 * 214.98161 * 22 21 20 39 39 H 1.09002 * 117.49953 * 359.97438 * 22 21 20 40 40 H 1.09000 * 117.49996 * 107.50493 * 23 22 21 41 41 H 1.08999 * 117.49664 * 252.51862 * 23 22 21 42 42 H 1.09007 * 110.46349 * 160.21434 * 24 17 16 43 43 H 1.08998 * 110.46495 * 282.79688 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0101 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9939 -3.5553 0.5499 12 6 2.3269 -4.1264 -1.4502 13 6 2.5435 -5.6586 -1.2680 14 6 1.4936 -6.0576 -0.2123 15 1 0.5912 -6.4785 -0.6558 16 6 2.1464 -7.0271 0.7975 17 7 1.6333 -6.5831 2.1165 18 6 1.2103 -7.3439 3.1454 19 8 0.8165 -6.8196 4.1656 20 6 1.2266 -8.8463 3.0281 21 6 0.7009 -9.4648 4.3250 22 6 0.5280 -10.9845 4.3635 23 6 1.6691 -10.3252 5.1408 24 6 1.6897 -5.1031 2.0325 25 6 1.1938 -4.7777 0.6109 26 1 0.1336 -4.5248 0.6009 27 1 -0.4851 0.8401 -0.0004 28 1 0.3555 -2.3881 0.0005 29 1 1.4697 -3.9159 -2.0896 30 1 3.2292 -3.6603 -1.8461 31 1 3.5481 -5.8858 -0.9110 32 1 2.3487 -6.1693 -2.2110 33 1 3.2324 -6.9400 0.7620 34 1 1.8407 -8.0537 0.5955 35 1 2.2472 -9.1859 2.8515 36 1 0.5927 -9.1527 2.1960 37 1 -0.0223 -8.8619 4.8743 38 1 -0.3089 -11.3815 4.9381 39 1 0.7883 -11.5436 3.4647 40 1 1.5829 -10.2884 6.2267 41 1 2.6801 -10.4503 4.7532 42 1 1.0318 -4.6538 2.7765 43 1 2.7131 -4.7526 2.1662 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026172516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:23 Heat of formation + Delta-G solvation = -2.295751 kcal Electronic energy + Delta-G solvation = -21788.061357 eV Core-core repulsion = 18640.750648 eV Total energy + Delta-G solvation = -3147.310709 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.29487 -38.73168 -37.07239 -35.13169 -33.31507 -31.00335 -30.52373 -28.58929 -28.25797 -25.04234 -23.76008 -22.85242 -22.60297 -21.02037 -20.16200 -19.08864 -18.88143 -17.30305 -16.90888 -16.27931 -15.72874 -15.37259 -14.85208 -14.49146 -14.16648 -14.11144 -13.61686 -13.24985 -13.03129 -12.89738 -12.34457 -12.26438 -11.86675 -11.74650 -11.66501 -11.57140 -11.16813 -10.87602 -10.76935 -10.69859 -10.57161 -10.38576 -10.26452 -10.22757 -10.21354 -9.96021 -9.71290 -9.61841 -8.87672 -8.63816 -6.95142 -5.76653 -3.05523 2.69379 2.97165 3.44206 3.48851 3.49721 3.59448 4.35440 4.47446 4.56766 4.63731 4.68780 4.78529 4.89894 4.95568 5.19371 5.27623 5.30457 5.39144 5.40109 5.44079 5.48691 5.57511 5.63171 5.66511 5.77090 5.85294 5.87268 5.95167 5.95636 6.05345 6.11529 6.18321 6.25117 6.32749 6.42359 6.55007 6.66659 6.79537 7.03718 7.66275 7.69590 8.23163 8.41828 9.52863 10.10521 10.44441 11.45840 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028420 B = 0.003529 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.001163 B = 7931.992730 C = 8554.397646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.184 3.816 11 H 0.057 0.943 12 C -0.142 4.142 13 C -0.116 4.116 14 C -0.102 4.102 15 H 0.084 0.916 16 C 0.104 3.896 17 N -0.627 5.627 18 C 0.533 3.467 19 O -0.542 6.542 20 C -0.105 4.105 21 C -0.140 4.140 22 C -0.181 4.181 23 C -0.179 4.179 24 C 0.114 3.886 25 C -0.107 4.107 26 H 0.087 0.913 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 -21.780 1.748 22.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.073 3.927 11 H 0.075 0.925 12 C -0.182 4.182 13 C -0.155 4.155 14 C -0.122 4.122 15 H 0.103 0.897 16 C -0.019 4.019 17 N -0.361 5.361 18 C 0.322 3.678 19 O -0.419 6.419 20 C -0.145 4.145 21 C -0.158 4.158 22 C -0.218 4.218 23 C -0.216 4.216 24 C -0.007 4.007 25 C -0.128 4.128 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.218 0.782 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.137 0.863 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.099 -21.400 2.437 21.925 hybrid contribution 0.176 0.941 -0.159 0.971 sum 4.274 -20.459 2.278 21.024 Atomic orbital electron populations 1.69645 1.05116 1.25806 1.57491 1.24737 0.95490 0.97694 1.02927 0.86287 0.78543 0.83635 0.77826 1.21295 1.21722 1.21259 1.19189 0.90936 0.84136 1.42931 0.91247 1.42444 1.05711 0.99716 1.88180 1.21112 0.93775 0.85196 0.92628 0.92544 1.23394 1.01409 0.92707 1.00727 1.22565 0.97540 0.97883 0.97502 1.22742 0.98700 0.95309 0.95463 0.89742 1.22742 0.98570 0.98522 0.82064 1.49279 1.63619 1.08252 1.14924 1.20155 0.76764 0.88908 0.81937 1.90701 1.47435 1.74768 1.28994 1.21182 1.03000 0.91794 0.98475 1.22086 1.03322 0.92653 0.97776 1.22996 1.01053 0.94972 1.02784 1.23038 0.95186 1.04376 0.98966 1.22479 1.01688 0.78676 0.97903 1.22991 1.01437 0.95098 0.93261 0.89504 0.93439 0.78187 0.91388 0.92288 0.91540 0.92355 0.90674 0.90837 0.89040 0.88638 0.86349 0.88703 0.88818 0.88761 0.88894 0.90030 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 2 C -0.01 -0.35 5.50 -17.44 -0.10 -0.45 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.56 9.96 -15.06 -0.15 -6.71 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.72 -17.55 5.20 -51.92 -0.27 -17.82 16 10 C 0.18 3.44 3.06 -66.37 -0.20 3.23 16 11 H 0.06 1.08 7.20 -51.93 -0.37 0.71 16 12 C -0.14 -2.31 6.62 -24.26 -0.16 -2.47 16 13 C -0.12 -1.40 6.41 -24.63 -0.16 -1.55 16 14 C -0.10 -1.25 3.94 -88.15 -0.35 -1.59 16 15 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 16 C 0.10 1.08 6.46 -2.27 -0.01 1.07 16 17 N -0.63 -8.52 3.32 -169.16 -0.56 -9.08 16 18 C 0.53 7.61 7.93 -10.98 -0.09 7.52 16 19 O -0.54 -9.99 15.85 5.56 0.09 -9.91 16 20 C -0.10 -1.03 4.97 -27.88 -0.14 -1.17 16 21 C -0.14 -1.43 5.42 -90.58 -0.49 -1.92 16 22 C -0.18 -1.41 10.25 -26.73 -0.27 -1.68 16 23 C -0.18 -1.55 10.18 -26.69 -0.27 -1.82 16 24 C 0.11 1.82 6.59 -2.48 -0.02 1.80 16 25 C -0.11 -1.71 3.58 -88.38 -0.32 -2.02 16 26 H 0.09 1.53 7.80 -51.93 -0.40 1.13 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.38 10.05 7.60 -40.82 -0.31 9.74 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.71 7.18 -51.93 -0.37 0.34 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.72 7.20 -51.92 -0.37 0.34 16 34 H 0.07 0.58 7.32 -51.93 -0.38 0.20 16 35 H 0.09 0.74 7.88 -51.92 -0.41 0.33 16 36 H 0.10 0.78 7.99 -51.93 -0.41 0.37 16 37 H 0.12 1.47 7.30 -51.93 -0.38 1.09 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.72 8.03 -51.93 -0.42 0.30 16 42 H 0.08 1.48 7.88 -51.92 -0.41 1.08 16 43 H 0.07 1.16 7.27 -51.93 -0.38 0.78 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -31.77 342.93 -9.73 -41.50 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.13 Total: 7.95 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.72 Total: -7.77 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.11 Total: -54.24 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.77 -9.73 -41.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026172516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.202 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds