Wall clock time and date at job start Tue Mar 31 2020 00:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48504 * 109.47149 * 239.99728 * 3 2 1 5 5 H 1.48501 * 109.47160 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47356 * 119.99864 * 3 2 1 7 7 C 1.38806 * 119.99961 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00207 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00418 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00787 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.40557 * 32.52777 * 10 9 7 12 12 C 1.54839 * 110.45711 * 269.92754 * 10 9 7 13 13 C 1.55810 * 102.28711 * 202.33739 * 12 10 9 14 14 C 1.54147 * 103.88264 * 39.44140 * 13 12 10 15 15 H 1.09002 * 112.65571 * 97.99966 * 14 13 12 16 16 C 1.54462 * 108.80045 * 222.72190 * 14 13 12 17 17 N 1.48332 * 104.30967 * 138.54587 * 16 14 13 18 18 C 1.34780 * 128.20071 * 138.22740 * 17 16 14 19 19 O 1.21281 * 120.00192 * 180.02562 * 18 17 16 20 20 C 1.50698 * 119.99874 * 0.02699 * 18 17 16 21 21 C 1.53003 * 109.47308 * 179.97438 * 20 18 17 22 22 C 1.53000 * 117.49792 * 175.00072 * 21 20 18 23 23 C 1.53002 * 60.02940 * 107.48056 * 22 21 20 24 24 C 1.48339 * 103.60332 * 318.49052 * 17 16 14 25 25 C 1.54042 * 104.51844 * 41.47204 * 24 17 16 26 26 H 1.08997 * 111.75413 * 96.51840 * 25 24 17 27 27 H 0.97007 * 120.00380 * 0.02562 * 1 2 3 28 28 H 0.97005 * 119.99730 * 359.97438 * 9 7 2 29 29 H 1.08997 * 110.76068 * 321.36316 * 12 10 9 30 30 H 1.08998 * 110.75563 * 84.73973 * 12 10 9 31 31 H 1.09004 * 111.80325 * 280.32363 * 13 12 10 32 32 H 1.09002 * 109.55501 * 157.46472 * 13 12 10 33 33 H 1.09007 * 110.46533 * 19.83728 * 16 14 13 34 34 H 1.08999 * 110.57853 * 257.31032 * 16 14 13 35 35 H 1.09011 * 109.47086 * 59.99709 * 20 18 17 36 36 H 1.09003 * 109.47674 * 300.00122 * 20 18 17 37 37 H 1.08999 * 115.55832 * 29.31689 * 21 20 18 38 38 H 1.09002 * 117.49833 * 214.98161 * 22 21 20 39 39 H 1.09002 * 117.49953 * 359.97438 * 22 21 20 40 40 H 1.09000 * 117.49996 * 107.50493 * 23 22 21 41 41 H 1.08999 * 117.49664 * 252.51862 * 23 22 21 42 42 H 1.09007 * 110.46349 * 160.21434 * 24 17 16 43 43 H 1.08998 * 110.46495 * 282.79688 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0101 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9939 -3.5553 0.5499 12 6 2.3269 -4.1264 -1.4502 13 6 2.5435 -5.6586 -1.2680 14 6 1.4936 -6.0576 -0.2123 15 1 0.5912 -6.4785 -0.6558 16 6 2.1464 -7.0271 0.7975 17 7 1.6333 -6.5831 2.1165 18 6 1.2103 -7.3439 3.1454 19 8 0.8165 -6.8196 4.1656 20 6 1.2266 -8.8463 3.0281 21 6 0.7009 -9.4648 4.3250 22 6 0.5280 -10.9845 4.3635 23 6 1.6691 -10.3252 5.1408 24 6 1.6897 -5.1031 2.0325 25 6 1.1938 -4.7777 0.6109 26 1 0.1336 -4.5248 0.6009 27 1 -0.4851 0.8401 -0.0004 28 1 0.3555 -2.3881 0.0005 29 1 1.4697 -3.9159 -2.0896 30 1 3.2292 -3.6603 -1.8461 31 1 3.5481 -5.8858 -0.9110 32 1 2.3487 -6.1693 -2.2110 33 1 3.2324 -6.9400 0.7620 34 1 1.8407 -8.0537 0.5955 35 1 2.2472 -9.1859 2.8515 36 1 0.5927 -9.1527 2.1960 37 1 -0.0223 -8.8619 4.8743 38 1 -0.3089 -11.3815 4.9381 39 1 0.7883 -11.5436 3.4647 40 1 1.5829 -10.2884 6.2267 41 1 2.6801 -10.4503 4.7532 42 1 1.0318 -4.6538 2.7765 43 1 2.7131 -4.7526 2.1662 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026172516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:22 Heat of formation + Delta-G solvation = -21.943192 kcal Electronic energy + Delta-G solvation = -21788.913334 eV Core-core repulsion = 18640.750648 eV Total energy + Delta-G solvation = -3148.162686 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42793 -39.85409 -37.88705 -36.63521 -34.96278 -32.69318 -31.63976 -29.91280 -29.35314 -26.63919 -24.86688 -24.56965 -23.20442 -21.90564 -21.38584 -20.32697 -19.97996 -19.06987 -18.14757 -17.32208 -16.98581 -16.65119 -16.02300 -15.83093 -15.54529 -14.94777 -14.91888 -14.73853 -14.49750 -13.98693 -13.62085 -13.32219 -13.23232 -12.97992 -12.87730 -12.57337 -12.44877 -12.33537 -12.28233 -12.11214 -11.94483 -11.67957 -11.51267 -11.46500 -11.36642 -11.27934 -10.99156 -10.87592 -10.69508 -9.77124 -8.96872 -7.93872 -5.21654 1.45995 1.49066 1.54874 1.62444 1.93358 2.56367 2.92833 3.34305 3.44024 3.53796 3.76121 3.78748 3.81082 4.06259 4.10206 4.18231 4.25435 4.37056 4.49241 4.50675 4.52338 4.60154 4.65708 4.68081 4.72597 4.76329 4.82212 4.88854 4.94502 5.04864 5.07693 5.11403 5.20518 5.28892 5.29888 5.36121 5.43474 5.48848 5.54506 5.64495 6.28615 6.62193 7.14951 7.33868 8.12196 8.33375 9.29761 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028420 B = 0.003529 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.001163 B = 7931.992730 C = 8554.397646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.077 0.923 9 N -0.736 5.736 10 C 0.174 3.826 11 H 0.052 0.948 12 C -0.139 4.139 13 C -0.100 4.100 14 C -0.094 4.094 15 H 0.098 0.902 16 C 0.106 3.894 17 N -0.626 5.626 18 C 0.524 3.476 19 O -0.598 6.598 20 C -0.090 4.090 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.182 4.182 24 C 0.116 3.884 25 C -0.104 4.104 26 H 0.060 0.940 27 H 0.249 0.751 28 H 0.370 0.630 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.043 0.957 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.355 -25.124 0.286 25.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.800 3.200 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.206 1.206 7 C -0.368 4.368 8 H 0.094 0.906 9 N -0.375 5.375 10 C 0.066 3.934 11 H 0.070 0.930 12 C -0.179 4.179 13 C -0.138 4.138 14 C -0.113 4.113 15 H 0.116 0.884 16 C -0.015 4.015 17 N -0.358 5.358 18 C 0.315 3.685 19 O -0.479 6.479 20 C -0.129 4.129 21 C -0.185 4.185 22 C -0.196 4.196 23 C -0.219 4.219 24 C -0.007 4.007 25 C -0.124 4.124 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.201 0.799 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.061 0.939 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.276 -24.809 0.940 25.607 hybrid contribution -0.479 1.950 0.343 2.037 sum 5.798 -22.858 1.283 23.617 Atomic orbital electron populations 1.69814 1.06669 1.25969 1.59879 1.25547 0.96322 1.01104 1.04129 0.85250 0.77194 0.79384 0.78191 1.20146 1.22452 1.20612 1.19602 0.91408 0.85295 1.40536 0.90556 1.42675 1.05269 1.01151 1.88433 1.21406 0.93466 0.83871 0.94688 0.92964 1.23218 1.00298 0.96530 0.97851 1.22513 0.98620 0.93869 0.98752 1.22747 0.99695 0.93412 0.95480 0.88406 1.22993 0.99466 0.99943 0.79066 1.49370 1.63322 1.06849 1.16294 1.21145 0.75429 0.90880 0.81043 1.90680 1.49789 1.76099 1.31310 1.21214 1.05220 0.87539 0.98975 1.22004 1.04024 0.94012 0.98502 1.23092 1.00436 0.92816 1.03231 1.23146 0.96093 1.03858 0.98818 1.22248 1.00671 0.80924 0.96833 1.22802 0.99209 0.96375 0.94025 0.92162 0.94184 0.79850 0.93315 0.92795 0.89235 0.89670 0.88699 0.86685 0.86077 0.86074 0.89828 0.88412 0.86490 0.89383 0.87411 0.93865 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.77 13.06 21.65 0.28 -60.49 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.97 46.80 29.55 68.60 2.03 48.83 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.24 -13.17 9.96 84.03 0.84 -12.33 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -37.20 5.20 -318.16 -1.65 -38.85 16 10 C 0.17 6.57 3.06 46.00 0.14 6.71 16 11 H 0.05 2.00 7.20 -2.39 -0.02 1.99 16 12 C -0.14 -4.36 6.62 32.19 0.21 -4.14 16 13 C -0.10 -1.97 6.41 31.95 0.20 -1.76 16 14 C -0.09 -1.97 3.94 -9.19 -0.04 -2.01 16 15 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 16 C 0.11 1.72 6.46 86.52 0.56 2.28 16 17 N -0.63 -15.97 3.32 -807.48 -2.68 -18.65 16 18 C 0.52 14.46 7.93 87.66 0.69 15.15 16 19 O -0.60 -23.01 15.85 -3.03 -0.05 -23.06 16 20 C -0.09 -1.48 4.97 29.85 0.15 -1.34 16 21 C -0.17 -3.16 5.42 -10.77 -0.06 -3.22 16 22 C -0.16 -2.00 10.25 30.60 0.31 -1.68 16 23 C -0.18 -2.77 10.18 30.62 0.31 -2.46 16 24 C 0.12 3.78 6.59 86.38 0.57 4.35 16 25 C -0.10 -3.31 3.58 -9.34 -0.03 -3.34 16 26 H 0.06 2.24 7.80 -2.39 -0.02 2.22 16 27 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 28 H 0.37 20.44 7.60 -92.70 -0.70 19.74 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 1.43 7.18 -2.39 -0.02 1.41 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.25 7.20 -2.38 -0.02 1.23 16 34 H 0.11 1.02 7.32 -2.39 -0.02 1.00 16 35 H 0.12 1.31 7.88 -2.38 -0.02 1.29 16 36 H 0.12 1.39 7.99 -2.39 -0.02 1.37 16 37 H 0.08 2.17 7.30 -2.39 -0.02 2.16 16 38 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.11 1.31 8.03 -2.39 -0.02 1.29 16 42 H 0.04 1.70 7.88 -2.38 -0.02 1.68 16 43 H 0.07 2.37 7.27 -2.39 -0.02 2.36 16 Total: -1.00 -74.62 342.93 2.55 -72.08 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: 0.29 Total: 28.08 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 4.33 Total: -7.94 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -4.05 Total: -117.99 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.05 Total: -23.06 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -74.62 2.55 -72.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026172516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.132 kcal (2) G-P(sol) polarization free energy of solvation -74.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds