Wall clock time and date at job start Tue Mar 31 2020 00:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99799 * 2 1 4 4 H 1.48497 * 109.46757 * 269.99773 * 3 2 1 5 5 H 1.48491 * 109.47064 * 29.99618 * 3 2 1 6 6 H 1.48498 * 109.47102 * 150.00041 * 3 2 1 7 7 C 1.38811 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00192 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99757 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99678 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47063 * 204.99871 * 10 9 7 12 12 C 1.52996 * 109.47320 * 180.02562 * 11 10 9 13 13 C 1.53004 * 109.46985 * 60.00125 * 12 11 10 14 14 N 1.46496 * 109.47047 * 60.00083 * 13 12 11 15 15 C 1.34782 * 120.00081 * 155.00027 * 14 13 12 16 16 O 1.21614 * 119.99948 * 359.97438 * 15 14 13 17 17 C 1.47103 * 120.00086 * 180.02562 * 15 14 13 18 18 C 1.32994 * 119.99554 * 180.02562 * 17 15 14 19 19 C 1.51406 * 136.31075 * 179.97438 * 18 17 15 20 20 C 1.53674 * 87.40886 * 153.99456 * 19 18 17 21 21 C 1.51400 * 136.32012 * 359.97438 * 18 17 15 22 22 C 1.52998 * 109.46990 * 300.00077 * 13 12 11 23 23 C 1.52996 * 109.47320 * 60.00128 * 22 13 12 24 24 H 0.96997 * 120.00610 * 0.02562 * 1 2 3 25 25 H 0.96997 * 120.00189 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47482 * 324.99976 * 10 9 7 27 27 H 1.09001 * 109.47366 * 60.00088 * 11 10 9 28 28 H 1.09008 * 109.47044 * 300.00201 * 11 10 9 29 29 H 1.08998 * 109.47236 * 300.00111 * 12 11 10 30 30 H 1.09003 * 109.47556 * 179.97438 * 12 11 10 31 31 H 1.08999 * 109.47023 * 179.97438 * 13 12 11 32 32 H 0.97001 * 120.00125 * 334.99956 * 14 13 12 33 33 H 1.07995 * 119.99864 * 359.97438 * 17 15 14 34 34 H 1.08998 * 113.56558 * 268.62451 * 19 18 17 35 35 H 1.08999 * 113.56083 * 39.36499 * 19 18 17 36 36 H 1.09002 * 113.82896 * 139.85040 * 20 19 18 37 37 H 1.09006 * 113.82514 * 271.42974 * 20 19 18 38 38 H 1.09003 * 113.56214 * 320.63874 * 21 18 17 39 39 H 1.08999 * 113.56416 * 91.37218 * 21 18 17 40 40 H 1.09006 * 109.47096 * 179.97438 * 22 13 12 41 41 H 1.08998 * 109.47057 * 299.99907 * 22 13 12 42 42 H 1.08998 * 109.47158 * 179.97438 * 23 22 13 43 43 H 1.08998 * 109.47236 * 59.99888 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.1810 -4.7521 -0.6091 12 6 1.9458 -6.0773 -0.6085 13 6 2.3091 -6.4558 0.8288 14 7 1.0849 -6.5982 1.6206 15 6 1.0785 -7.3828 2.7165 16 8 2.0890 -7.9729 3.0477 17 6 -0.1510 -7.5262 3.5113 18 6 -0.1570 -8.3001 4.5929 19 6 -1.1684 -8.7032 5.6450 20 6 -0.3492 -9.9887 5.8399 21 6 0.8443 -9.1710 5.3217 22 6 3.1863 -5.3604 1.4384 23 6 2.4215 -4.0353 1.4378 24 1 -0.4851 0.8400 -0.0004 25 1 0.3556 -2.3881 0.0005 26 1 2.9688 -3.5505 -0.5889 27 1 0.9217 -4.4823 -1.6328 28 1 0.2702 -4.8584 -0.0196 29 1 2.8567 -5.9713 -1.1977 30 1 1.3207 -6.8578 -1.0424 31 1 2.8536 -7.4000 0.8292 32 1 0.2788 -6.1278 1.3562 33 1 -1.0484 -7.0025 3.2169 34 1 -1.1713 -8.0518 6.5189 35 1 -2.1668 -8.8794 5.2447 36 1 -0.2533 -10.2961 6.8813 37 1 -0.6448 -10.8037 5.1791 38 1 1.5002 -9.7317 4.6557 39 1 1.3873 -8.6464 6.1078 40 1 3.4448 -5.6298 2.4625 41 1 4.0972 -5.2544 0.8492 42 1 3.0463 -3.2550 1.8725 43 1 1.5106 -4.1412 2.0270 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026474166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:28 Heat of formation + Delta-G solvation = -1.153337 kcal Electronic energy + Delta-G solvation = -21678.698385 eV Core-core repulsion = 18531.437214 eV Total energy + Delta-G solvation = -3147.261171 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.10653 -38.85289 -37.57765 -34.57869 -32.72852 -31.25820 -30.41275 -30.22197 -27.54995 -25.95562 -23.98372 -23.36694 -22.18898 -21.27688 -20.75090 -18.82734 -18.39930 -17.06046 -17.01309 -15.81942 -15.66844 -15.34621 -14.82092 -14.56154 -14.32369 -13.92243 -13.50161 -13.45045 -13.09782 -12.66117 -12.35149 -12.29731 -12.07913 -11.92003 -11.81900 -11.58569 -11.21408 -10.99753 -10.86571 -10.77434 -10.68821 -10.36769 -10.15779 -10.10307 -9.68140 -9.60461 -9.55207 -9.32857 -8.88253 -8.72682 -6.93665 -5.75842 -3.03927 1.31573 3.29280 3.42025 3.43817 3.49319 3.50698 4.22935 4.32055 4.53414 4.59413 4.88233 4.95720 5.11421 5.13532 5.17009 5.31901 5.41654 5.49080 5.52766 5.57563 5.61240 5.72770 5.75441 5.82425 5.91498 5.95960 5.99733 6.04816 6.10859 6.12878 6.30007 6.38747 6.49891 6.54774 6.57530 6.71620 6.81413 7.01147 7.16492 7.70847 7.71734 8.40112 8.43307 9.54247 10.12757 10.47184 11.46996 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023884 B = 0.003486 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.044833 B = 8030.427058 C = 8572.529911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.178 3.822 11 C -0.124 4.124 12 C -0.122 4.122 13 C 0.149 3.851 14 N -0.714 5.714 15 C 0.550 3.450 16 O -0.550 6.550 17 C -0.196 4.196 18 C -0.067 4.067 19 C -0.109 4.109 20 C -0.143 4.143 21 C -0.105 4.105 22 C -0.128 4.128 23 C -0.132 4.132 24 H 0.254 0.746 25 H 0.382 0.618 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.401 0.599 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.400 -19.238 6.884 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.068 3.932 11 C -0.163 4.163 12 C -0.161 4.161 13 C 0.045 3.955 14 N -0.365 5.365 15 C 0.339 3.661 16 O -0.430 6.430 17 C -0.217 4.217 18 C -0.069 4.069 19 C -0.146 4.146 20 C -0.180 4.180 21 C -0.141 4.141 22 C -0.167 4.167 23 C -0.172 4.172 24 H 0.064 0.936 25 H 0.216 0.784 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.237 0.763 33 H 0.150 0.850 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.550 -19.488 7.083 20.742 hybrid contribution -0.363 1.386 -0.118 1.438 sum -0.913 -18.101 6.965 19.417 Atomic orbital electron populations 1.69653 1.05079 1.25568 1.58012 1.24725 0.95505 0.97633 1.03211 0.86214 0.78686 0.83984 0.77487 1.21775 1.21833 1.20797 1.19247 0.90980 0.84178 1.42266 0.91256 1.42428 1.05703 0.99842 1.88611 1.20227 0.94289 0.85821 0.92869 1.21812 0.98648 0.94295 1.01541 1.21796 1.01438 0.97801 0.95028 1.20945 0.85430 0.98929 0.90241 1.46034 1.14717 1.48292 1.27451 1.18387 0.88302 0.78843 0.80594 1.90739 1.34815 1.47586 1.69842 1.21673 0.98567 1.02938 0.98474 1.23413 0.98836 0.91392 0.93253 1.22345 0.97673 0.97162 0.97385 1.22782 0.97112 0.96338 1.01800 1.22251 0.96333 0.96382 0.99164 1.21921 0.98341 0.95687 1.00766 1.22206 0.99645 0.94833 1.00523 0.93589 0.78425 0.93587 0.91510 0.92629 0.90449 0.91856 0.90064 0.76279 0.85017 0.88161 0.90466 0.90532 0.89808 0.89592 0.88530 0.92340 0.91535 0.92243 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.85 5.12 -53.42 -0.27 -18.12 16 10 C 0.18 3.42 2.77 -67.93 -0.19 3.23 16 11 C -0.12 -1.91 5.22 -26.73 -0.14 -2.05 16 12 C -0.12 -1.53 5.61 -26.73 -0.15 -1.68 16 13 C 0.15 2.02 2.78 -67.93 -0.19 1.83 16 14 N -0.71 -9.38 4.23 -54.99 -0.23 -9.61 16 15 C 0.55 7.85 7.73 -12.66 -0.10 7.75 16 16 O -0.55 -9.40 14.81 5.27 0.08 -9.32 16 17 C -0.20 -2.30 10.03 -37.81 -0.38 -2.68 16 18 C -0.07 -0.73 6.92 -100.49 -0.70 -1.42 16 19 C -0.11 -0.85 7.95 -27.40 -0.22 -1.07 16 20 C -0.14 -1.08 8.18 -26.04 -0.21 -1.29 16 21 C -0.10 -1.07 7.01 -27.41 -0.19 -1.26 16 22 C -0.13 -1.95 5.60 -26.73 -0.15 -2.10 16 23 C -0.13 -2.38 5.34 -26.73 -0.14 -2.52 16 24 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 26 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.82 6.50 -51.92 -0.34 0.48 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.13 7.57 -51.93 -0.39 0.74 16 32 H 0.40 4.79 6.85 -40.82 -0.28 4.51 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.02 7.48 -51.93 -0.39 0.63 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 1.00 7.60 -51.93 -0.39 0.60 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -31.77 344.31 -9.69 -41.46 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -7.15 Total: 10.77 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -3.00 Total: -10.44 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.22 Total: -55.09 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.77 -9.69 -41.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026474166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.310 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds