Wall clock time and date at job start Mon Mar 30 2020 23:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99890 * 2 1 4 4 H 1.48505 * 109.46916 * 240.00026 * 3 2 1 5 5 H 1.48500 * 109.47109 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47164 * 120.00029 * 3 2 1 7 7 C 1.38815 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99650 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99453 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47059 * 155.00510 * 10 9 7 12 12 C 1.52996 * 109.47571 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46543 * 299.99799 * 12 11 10 14 14 N 1.46506 * 109.46831 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00033 * 155.00073 * 14 13 12 16 16 O 1.21609 * 119.99876 * 359.97438 * 15 14 13 17 17 C 1.47096 * 119.99848 * 179.97438 * 15 14 13 18 18 C 1.32619 * 124.61857 * 179.69763 * 17 15 14 19 19 C 1.51110 * 110.75512 * 179.84527 * 18 17 15 20 20 C 1.54569 * 104.90457 * 343.80416 * 19 18 17 21 21 C 1.51108 * 124.62475 * 0.02562 * 17 15 14 22 22 C 1.52997 * 109.47452 * 59.99968 * 13 12 11 23 23 C 1.52996 * 109.47131 * 300.00126 * 22 13 12 24 24 H 0.97000 * 119.99928 * 359.97438 * 1 2 3 25 25 H 0.96994 * 120.00000 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.47453 * 35.00541 * 10 9 7 27 27 H 1.09001 * 109.47420 * 59.99456 * 11 10 9 28 28 H 1.09004 * 109.46832 * 299.99894 * 11 10 9 29 29 H 1.08992 * 109.47346 * 180.02562 * 12 11 10 30 30 H 1.09001 * 109.47364 * 59.99212 * 12 11 10 31 31 H 1.09001 * 109.46812 * 299.99751 * 13 12 11 32 32 H 0.97000 * 119.99812 * 334.99233 * 14 13 12 33 33 H 1.08004 * 124.61962 * 359.97438 * 18 17 15 34 34 H 1.09009 * 110.51716 * 224.84806 * 19 18 17 35 35 H 1.09004 * 110.15093 * 102.57678 * 19 18 17 36 36 H 1.08995 * 110.98493 * 266.71054 * 20 19 18 37 37 H 1.09003 * 110.98464 * 142.91193 * 20 19 18 38 38 H 1.09006 * 110.36243 * 315.43495 * 21 17 15 39 39 H 1.09002 * 110.36730 * 77.75307 * 21 17 15 40 40 H 1.09001 * 109.46832 * 59.99801 * 22 13 12 41 41 H 1.08996 * 109.46952 * 179.97438 * 22 13 12 42 42 H 1.09001 * 109.46997 * 299.99574 * 23 22 13 43 43 H 1.09004 * 109.47552 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.1809 -4.7522 0.6090 12 6 1.9461 -6.0771 0.6096 13 6 2.3106 -6.4561 -0.8272 14 7 3.0428 -7.7250 -0.8267 15 6 3.0343 -8.5084 -1.9235 16 8 2.4185 -8.1620 -2.9133 17 6 3.7700 -9.7822 -1.9231 18 6 3.8191 -10.6241 -2.9466 19 6 4.6646 -11.8299 -2.6080 20 6 5.4721 -11.4109 -1.3584 21 6 4.5669 -10.3131 -0.7542 22 6 3.1878 -5.3607 -1.4368 23 6 2.4226 -4.0359 -1.4373 24 1 -0.4850 0.8401 0.0004 25 1 0.3557 -2.3881 -0.0005 26 1 2.9688 -3.5505 0.5890 27 1 0.2702 -4.8584 0.0196 28 1 0.9216 -4.4823 1.6328 29 1 1.3211 -6.8575 1.0434 30 1 2.8567 -5.9705 1.1993 31 1 1.4001 -6.5626 -1.4169 32 1 3.5337 -8.0014 -0.0371 33 1 3.3241 -10.4681 -3.8938 34 1 5.3372 -12.0684 -3.4320 35 1 4.0266 -12.6835 -2.3788 36 1 6.4438 -11.0051 -1.6396 37 1 5.5850 -12.2470 -0.6682 38 1 5.1733 -9.5198 -0.3170 39 1 3.9014 -10.7402 -0.0040 40 1 4.0982 -5.2542 -0.8471 41 1 3.4477 -5.6310 -2.4602 42 1 1.5121 -4.1424 -2.0271 43 1 3.0477 -3.2553 -1.8712 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026477153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:20 Heat of formation + Delta-G solvation = -33.536903 kcal Electronic energy + Delta-G solvation = -21441.923844 eV Core-core repulsion = 18293.258417 eV Total energy + Delta-G solvation = -3148.665427 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.24480 -38.55678 -37.46361 -34.82784 -33.01322 -30.79474 -30.37616 -29.62063 -28.75067 -27.11854 -23.77377 -22.57881 -22.13110 -21.31467 -20.54629 -19.68211 -18.68079 -17.41151 -16.93594 -16.21765 -15.88017 -15.26908 -14.70877 -14.67181 -13.94453 -13.70957 -13.53877 -13.20321 -13.12390 -12.95737 -12.53000 -12.31682 -12.03380 -11.95611 -11.78033 -11.61392 -11.56175 -11.37825 -11.00934 -10.78185 -10.73326 -10.64381 -10.18997 -10.07405 -9.89735 -9.72854 -9.55118 -9.26324 -8.90132 -8.80873 -6.91115 -5.72648 -3.01041 1.19022 3.18099 3.23501 3.46243 3.50602 3.51621 4.16183 4.22749 4.60113 4.61991 4.73207 4.91691 4.97241 5.08155 5.26786 5.29924 5.32451 5.40217 5.43679 5.55067 5.57472 5.64935 5.71667 5.76511 5.77701 5.88317 5.91294 6.00664 6.09274 6.25403 6.27788 6.31325 6.34391 6.52379 6.60636 6.70031 6.76529 7.02586 7.18714 7.52527 7.73171 8.22747 8.46377 9.57060 10.16033 10.50600 11.50120 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043333 B = 0.002906 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.007349 B = 9632.442171 C = 9691.431626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.178 3.822 11 C -0.120 4.120 12 C -0.118 4.118 13 C 0.144 3.856 14 N -0.720 5.720 15 C 0.562 3.438 16 O -0.541 6.541 17 C -0.193 4.193 18 C -0.078 4.078 19 C -0.107 4.107 20 C -0.123 4.123 21 C -0.092 4.092 22 C -0.123 4.123 23 C -0.132 4.132 24 H 0.255 0.745 25 H 0.383 0.617 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.397 0.603 33 H 0.138 0.862 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.744 -24.794 -0.221 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.068 3.932 11 C -0.159 4.159 12 C -0.157 4.157 13 C 0.041 3.959 14 N -0.369 5.369 15 C 0.350 3.650 16 O -0.420 6.420 17 C -0.196 4.196 18 C -0.097 4.097 19 C -0.144 4.144 20 C -0.161 4.161 21 C -0.129 4.129 22 C -0.162 4.162 23 C -0.173 4.173 24 H 0.065 0.935 25 H 0.217 0.783 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.231 0.769 33 H 0.155 0.845 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.402 -24.361 -0.891 26.128 hybrid contribution 0.382 0.875 0.264 0.991 sum 9.784 -23.486 -0.627 25.450 Atomic orbital electron populations 1.69656 1.05085 1.25691 1.57829 1.24741 0.95507 0.97645 1.03188 0.86284 0.78520 0.83685 0.77805 1.21320 1.21731 1.21327 1.19201 0.90933 0.84186 1.42490 0.91296 1.42422 1.05786 0.99792 1.88570 1.20234 0.94265 0.85960 0.92782 1.21753 0.98953 0.93464 1.01759 1.21747 1.00804 0.98272 0.94871 1.21127 0.95500 0.81804 0.97503 1.46069 1.53113 1.21780 1.15983 1.17979 0.80414 0.83472 0.83120 1.90807 1.43871 1.73985 1.33311 1.21905 1.03478 0.96014 0.98208 1.24052 0.94501 0.93308 0.97874 1.21482 0.97824 0.96660 0.98457 1.22428 0.98526 0.98327 0.96803 1.21255 0.97254 0.98200 0.96158 1.21891 0.98552 0.95368 1.00435 1.22224 0.99774 0.94493 1.00818 0.93513 0.78307 0.93632 0.91958 0.91366 0.91902 0.91591 0.89451 0.76872 0.84463 0.90217 0.89723 0.90772 0.90525 0.90750 0.90228 0.92354 0.92401 0.92490 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.35 5.12 -53.42 -0.27 -18.62 16 10 C 0.18 3.52 2.77 -67.93 -0.19 3.33 16 11 C -0.12 -1.96 5.39 -26.73 -0.14 -2.10 16 12 C -0.12 -1.50 5.39 -26.73 -0.14 -1.65 16 13 C 0.14 2.00 2.45 -67.93 -0.17 1.83 16 14 N -0.72 -8.37 5.07 -54.99 -0.28 -8.65 16 15 C 0.56 7.54 7.76 -12.67 -0.10 7.44 16 16 O -0.54 -9.53 16.43 5.27 0.09 -9.44 16 17 C -0.19 -1.94 6.09 -102.73 -0.63 -2.56 16 18 C -0.08 -0.70 10.43 -36.01 -0.38 -1.08 16 19 C -0.11 -0.64 6.80 -26.86 -0.18 -0.83 16 20 C -0.12 -0.68 7.17 -25.07 -0.18 -0.86 16 21 C -0.09 -0.62 6.02 -26.85 -0.16 -0.78 16 22 C -0.12 -1.91 5.50 -26.73 -0.15 -2.05 16 23 C -0.13 -2.47 5.50 -26.73 -0.15 -2.62 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.38 10.32 7.80 -40.82 -0.32 10.00 16 26 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 32 H 0.40 3.45 7.61 -40.82 -0.31 3.14 16 33 H 0.14 1.31 8.03 -52.48 -0.42 0.88 16 34 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.45 7.83 -51.93 -0.41 0.05 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 346.17 15.07 5.22 5.22 Total: -1.00 -32.87 346.17 -9.67 -42.54 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.31 Total: 8.41 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -2.81 Total: -9.24 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.17 Total: -55.11 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.87 -9.67 -42.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026477153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.002 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds