Wall clock time and date at job start Mon Mar 30 2020 23:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99890 * 2 1 4 4 H 1.48505 * 109.46916 * 240.00026 * 3 2 1 5 5 H 1.48500 * 109.47109 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47164 * 120.00029 * 3 2 1 7 7 C 1.38815 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99650 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99453 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47059 * 155.00510 * 10 9 7 12 12 C 1.52996 * 109.47571 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46543 * 299.99799 * 12 11 10 14 14 N 1.46506 * 109.46831 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00033 * 155.00073 * 14 13 12 16 16 O 1.21609 * 119.99876 * 359.97438 * 15 14 13 17 17 C 1.47096 * 119.99848 * 179.97438 * 15 14 13 18 18 C 1.32619 * 124.61857 * 179.69763 * 17 15 14 19 19 C 1.51110 * 110.75512 * 179.84527 * 18 17 15 20 20 C 1.54569 * 104.90457 * 343.80416 * 19 18 17 21 21 C 1.51108 * 124.62475 * 0.02562 * 17 15 14 22 22 C 1.52997 * 109.47452 * 59.99968 * 13 12 11 23 23 C 1.52996 * 109.47131 * 300.00126 * 22 13 12 24 24 H 0.97000 * 119.99928 * 359.97438 * 1 2 3 25 25 H 0.96994 * 120.00000 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.47453 * 35.00541 * 10 9 7 27 27 H 1.09001 * 109.47420 * 59.99456 * 11 10 9 28 28 H 1.09004 * 109.46832 * 299.99894 * 11 10 9 29 29 H 1.08992 * 109.47346 * 180.02562 * 12 11 10 30 30 H 1.09001 * 109.47364 * 59.99212 * 12 11 10 31 31 H 1.09001 * 109.46812 * 299.99751 * 13 12 11 32 32 H 0.97000 * 119.99812 * 334.99233 * 14 13 12 33 33 H 1.08004 * 124.61962 * 359.97438 * 18 17 15 34 34 H 1.09009 * 110.51716 * 224.84806 * 19 18 17 35 35 H 1.09004 * 110.15093 * 102.57678 * 19 18 17 36 36 H 1.08995 * 110.98493 * 266.71054 * 20 19 18 37 37 H 1.09003 * 110.98464 * 142.91193 * 20 19 18 38 38 H 1.09006 * 110.36243 * 315.43495 * 21 17 15 39 39 H 1.09002 * 110.36730 * 77.75307 * 21 17 15 40 40 H 1.09001 * 109.46832 * 59.99801 * 22 13 12 41 41 H 1.08996 * 109.46952 * 179.97438 * 22 13 12 42 42 H 1.09001 * 109.46997 * 299.99574 * 23 22 13 43 43 H 1.09004 * 109.47552 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.1809 -4.7522 0.6090 12 6 1.9461 -6.0771 0.6096 13 6 2.3106 -6.4561 -0.8272 14 7 3.0428 -7.7250 -0.8267 15 6 3.0343 -8.5084 -1.9235 16 8 2.4185 -8.1620 -2.9133 17 6 3.7700 -9.7822 -1.9231 18 6 3.8191 -10.6241 -2.9466 19 6 4.6646 -11.8299 -2.6080 20 6 5.4721 -11.4109 -1.3584 21 6 4.5669 -10.3131 -0.7542 22 6 3.1878 -5.3607 -1.4368 23 6 2.4226 -4.0359 -1.4373 24 1 -0.4850 0.8401 0.0004 25 1 0.3557 -2.3881 -0.0005 26 1 2.9688 -3.5505 0.5890 27 1 0.2702 -4.8584 0.0196 28 1 0.9216 -4.4823 1.6328 29 1 1.3211 -6.8575 1.0434 30 1 2.8567 -5.9705 1.1993 31 1 1.4001 -6.5626 -1.4169 32 1 3.5337 -8.0014 -0.0371 33 1 3.3241 -10.4681 -3.8938 34 1 5.3372 -12.0684 -3.4320 35 1 4.0266 -12.6835 -2.3788 36 1 6.4438 -11.0051 -1.6396 37 1 5.5850 -12.2470 -0.6682 38 1 5.1733 -9.5198 -0.3170 39 1 3.9014 -10.7402 -0.0040 40 1 4.0982 -5.2542 -0.8471 41 1 3.4477 -5.6310 -2.4602 42 1 1.5121 -4.1424 -2.0271 43 1 3.0477 -3.2553 -1.8712 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026477153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:20 Heat of formation + Delta-G solvation = -54.753325 kcal Electronic energy + Delta-G solvation = -21442.843857 eV Core-core repulsion = 18293.258417 eV Total energy + Delta-G solvation = -3149.585440 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.25573 -39.62143 -38.46523 -36.38105 -34.65859 -32.52661 -31.71367 -30.44700 -29.46390 -28.47524 -25.63640 -23.83251 -23.35430 -22.22998 -21.44202 -21.08686 -19.73299 -19.00958 -18.10262 -17.30174 -16.88018 -16.51182 -16.13252 -15.69205 -15.46808 -15.33524 -15.04782 -14.61845 -14.11610 -13.77416 -13.55625 -13.47474 -13.19282 -13.10711 -12.93008 -12.80431 -12.58118 -12.43693 -12.32193 -12.18815 -12.05598 -12.03263 -11.97162 -11.66323 -11.47629 -11.22047 -10.96304 -10.82004 -10.14322 -9.79775 -8.99845 -7.93330 -5.21673 0.39045 1.46336 1.49610 1.55515 2.19229 2.28290 2.56822 3.39130 3.53790 3.66133 3.74704 3.82720 3.88909 4.12223 4.24084 4.27866 4.33361 4.35413 4.38560 4.51314 4.57814 4.63758 4.80456 4.84862 4.86422 4.93228 4.98547 4.99984 5.09684 5.11611 5.20752 5.23486 5.25929 5.37533 5.40993 5.46971 5.53460 5.54196 5.56705 5.62437 6.29289 6.59538 7.25289 7.34582 8.12207 8.34746 9.30240 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043333 B = 0.002906 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.007349 B = 9632.442171 C = 9691.431626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.972 3.028 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.238 4.238 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.173 3.827 11 C -0.113 4.113 12 C -0.104 4.104 13 C 0.151 3.849 14 N -0.704 5.704 15 C 0.556 3.444 16 O -0.595 6.595 17 C -0.213 4.213 18 C -0.076 4.076 19 C -0.104 4.104 20 C -0.119 4.119 21 C -0.087 4.087 22 C -0.111 4.111 23 C -0.123 4.123 24 H 0.250 0.750 25 H 0.371 0.629 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.416 0.584 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.037 0.963 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.980 -26.989 1.284 29.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.801 3.199 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.370 4.370 8 H 0.093 0.907 9 N -0.378 5.378 10 C 0.065 3.935 11 C -0.152 4.152 12 C -0.143 4.143 13 C 0.046 3.954 14 N -0.354 5.354 15 C 0.346 3.654 16 O -0.477 6.477 17 C -0.215 4.215 18 C -0.096 4.096 19 C -0.140 4.140 20 C -0.157 4.157 21 C -0.124 4.124 22 C -0.151 4.151 23 C -0.164 4.164 24 H 0.059 0.941 25 H 0.203 0.797 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.254 0.746 33 H 0.140 0.860 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.701 -26.609 0.652 29.076 hybrid contribution -0.310 1.484 -0.282 1.542 sum 11.391 -25.125 0.370 27.589 Atomic orbital electron populations 1.69820 1.06617 1.26014 1.59816 1.25567 0.96378 1.01097 1.04069 0.85235 0.77200 0.79317 0.78176 1.20718 1.22269 1.20096 1.19597 0.91394 0.85320 1.40646 0.90693 1.42666 1.05442 1.01136 1.88595 1.20479 0.94586 0.85029 0.93396 1.21643 0.98347 0.94130 1.01105 1.21647 1.01793 0.96642 0.94173 1.20866 0.94354 0.82300 0.97878 1.45838 1.52586 1.20540 1.16430 1.18597 0.79823 0.84508 0.82483 1.90781 1.46291 1.75383 1.35254 1.21954 1.04516 0.94763 1.00316 1.24350 0.93903 0.94370 0.97012 1.21548 0.97748 0.95439 0.99314 1.22462 0.98071 0.98497 0.96629 1.21309 0.97267 0.98826 0.95031 1.21752 0.99033 0.93958 1.00311 1.22034 0.98919 0.95807 0.99620 0.94117 0.79735 0.93283 0.92983 0.91232 0.89318 0.89220 0.92040 0.74644 0.85994 0.89035 0.88262 0.90569 0.88502 0.89888 0.89007 0.90442 0.93738 0.94405 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.76 13.06 21.65 0.28 -60.48 16 2 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 3 Si 0.97 46.95 29.55 68.60 2.03 48.98 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 7 C -0.24 -13.42 9.93 84.03 0.83 -12.59 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -38.08 5.12 -322.94 -1.65 -39.74 16 10 C 0.17 6.84 2.77 44.99 0.12 6.97 16 11 C -0.11 -3.58 5.39 30.59 0.16 -3.42 16 12 C -0.10 -2.37 5.39 30.59 0.16 -2.20 16 13 C 0.15 4.01 2.45 44.99 0.11 4.12 16 14 N -0.70 -15.07 5.07 -446.13 -2.26 -17.33 16 15 C 0.56 14.59 7.76 86.57 0.67 15.26 16 16 O -0.59 -21.59 16.43 -4.06 -0.07 -21.66 16 17 C -0.21 -3.95 6.09 -18.57 -0.11 -4.06 16 18 C -0.08 -1.30 10.43 24.65 0.26 -1.04 16 19 C -0.10 -0.95 6.80 30.51 0.21 -0.75 16 20 C -0.12 -0.88 7.17 31.67 0.23 -0.66 16 21 C -0.09 -0.90 6.02 30.52 0.18 -0.72 16 22 C -0.11 -3.38 5.50 30.59 0.17 -3.21 16 23 C -0.12 -4.69 5.50 30.59 0.17 -4.52 16 24 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 25 H 0.37 20.63 7.80 -92.71 -0.72 19.90 16 26 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 2.00 7.58 -2.39 -0.02 1.98 16 32 H 0.42 5.84 7.61 -92.71 -0.71 5.14 16 33 H 0.12 2.37 8.03 -2.91 -0.02 2.35 16 34 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.08 0.71 7.83 -2.38 -0.02 0.70 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -73.60 346.17 1.53 -72.07 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: -0.43 Total: 29.14 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 3.64 Total: -10.99 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -3.63 Total: -117.55 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.07 Total: -21.66 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -73.60 1.53 -72.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026477153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.317 kcal (2) G-P(sol) polarization free energy of solvation -73.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds