Wall clock time and date at job start Tue Mar 31 2020 00:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47129 * 275.00076 * 10 9 7 12 12 C 1.53005 * 109.47027 * 299.99652 * 11 10 9 13 13 C 1.53000 * 109.47243 * 300.00223 * 12 11 10 14 14 N 1.46492 * 109.47508 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99887 * 84.99597 * 14 13 12 16 16 O 1.21279 * 120.00231 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00243 * 180.02562 * 15 14 13 18 18 H 1.08999 * 115.55255 * 325.58424 * 17 15 14 19 19 C 1.53001 * 117.49960 * 111.25472 * 17 15 14 20 20 C 1.52997 * 117.50332 * 179.91656 * 17 15 14 21 21 C 1.52986 * 138.59325 * 121.61916 * 20 17 15 22 22 C 1.52987 * 138.58711 * 23.39537 * 20 17 15 23 23 C 1.53005 * 109.47178 * 59.99291 * 13 12 11 24 24 C 1.52995 * 109.47630 * 154.99681 * 10 9 7 25 25 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 26 26 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47135 * 34.99720 * 10 9 7 28 28 H 1.09006 * 109.47229 * 59.99295 * 11 10 9 29 29 H 1.09002 * 109.47304 * 179.97438 * 11 10 9 30 30 H 1.08994 * 109.47246 * 179.97438 * 12 11 10 31 31 H 1.09002 * 109.47088 * 59.99855 * 12 11 10 32 32 H 1.09002 * 109.46778 * 299.99822 * 13 12 11 33 33 H 0.97003 * 120.00248 * 265.00098 * 14 13 12 34 34 H 1.09008 * 117.50016 * 214.97666 * 19 17 15 35 35 H 1.08993 * 117.50275 * 0.02562 * 19 17 15 36 36 H 1.09006 * 117.49892 * 336.59190 * 21 20 17 37 37 H 1.09002 * 117.50091 * 121.61639 * 21 20 17 38 38 H 1.09007 * 117.50454 * 238.38998 * 22 20 17 39 39 H 1.08995 * 117.50199 * 23.38875 * 22 20 17 40 40 H 1.08999 * 109.46918 * 179.97438 * 23 13 12 41 41 H 1.09002 * 109.46833 * 60.00565 * 23 13 12 42 42 H 1.09002 * 109.47248 * 180.02562 * 24 10 9 43 43 H 1.08997 * 109.47205 * 300.00376 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 4.2578 -2.9756 1.4380 12 6 5.0258 -1.9432 2.2659 13 6 6.4132 -1.7310 1.6569 14 7 7.1484 -0.7421 2.4491 15 6 7.8306 -1.1292 3.5451 16 8 7.8363 -2.2962 3.8752 17 6 8.5864 -0.1119 4.3605 18 1 9.0350 0.7047 3.7948 19 6 8.0572 0.2057 5.7605 20 6 9.3394 -0.6136 5.5942 21 6 10.7693 -0.6298 6.1379 22 6 9.9439 -1.9178 6.1177 23 6 6.2676 -1.2263 0.2198 24 6 5.4996 -2.2586 -0.6080 25 1 -0.4850 0.8401 0.0004 26 1 3.8646 -0.3620 0.0007 27 1 3.5651 -3.2062 -0.5887 28 1 3.2693 -3.1267 1.8720 29 1 4.8025 -3.9197 1.4380 30 1 5.1292 -2.3026 3.2897 31 1 4.4808 -0.9992 2.2659 32 1 6.9583 -2.6750 1.6569 33 1 7.1441 0.1912 2.1850 34 1 8.1579 1.2312 6.1160 35 1 7.1626 -0.3214 6.0919 36 1 11.5827 -0.5419 5.4175 37 1 10.9453 -0.1598 7.1055 38 1 9.5768 -2.2954 7.0722 39 1 10.2138 -2.6776 5.3843 40 1 7.2560 -1.0747 -0.2139 41 1 5.7226 -0.2823 0.2198 42 1 6.0445 -3.2027 -0.6084 43 1 5.3959 -1.8990 -1.6317 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026566750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:35 Heat of formation + Delta-G solvation = 24.052759 kcal Electronic energy + Delta-G solvation = -21994.416482 eV Core-core repulsion = 18848.248329 eV Total energy + Delta-G solvation = -3146.168152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.20240 -38.64362 -37.32369 -34.70135 -33.04172 -32.58629 -30.68068 -30.38505 -28.17266 -24.46305 -23.15055 -22.60563 -22.34326 -21.54252 -20.42558 -19.41270 -18.48322 -17.77489 -17.04881 -16.23788 -15.26026 -15.15423 -14.88289 -14.74965 -14.53183 -14.02094 -13.93953 -13.56139 -12.77344 -12.62078 -12.42376 -12.30412 -12.01490 -11.89907 -11.76674 -11.68954 -11.08225 -10.91462 -10.78590 -10.54224 -10.42504 -10.33292 -10.22395 -10.14712 -10.07598 -9.87074 -9.57225 -9.53253 -8.93007 -8.81458 -7.24300 -5.76213 -3.10584 2.48335 3.01188 3.33557 3.35388 3.42676 3.51880 3.65385 4.07277 4.55433 4.57974 4.60064 4.87072 4.98747 5.09981 5.21234 5.29895 5.34119 5.37823 5.42547 5.43805 5.47026 5.53309 5.64666 5.72316 5.72887 5.74327 5.84646 5.94221 5.95790 5.99133 6.06382 6.21826 6.38708 6.47551 6.55851 6.69845 6.81787 6.89506 7.00838 7.57680 8.01861 8.29031 8.43443 9.22476 9.94940 10.15450 11.42605 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023609 B = 0.004139 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.717814 B = 6763.022165 C = 7294.901075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.881 3.119 4 H -0.285 1.285 5 H -0.278 1.278 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.177 3.823 11 C -0.130 4.130 12 C -0.118 4.118 13 C 0.148 3.852 14 N -0.722 5.722 15 C 0.540 3.460 16 O -0.535 6.535 17 C -0.142 4.142 18 H 0.122 0.878 19 C -0.100 4.100 20 C -0.201 4.201 21 C -0.131 4.131 22 C -0.113 4.113 23 C -0.124 4.124 24 C -0.121 4.121 25 H 0.258 0.742 26 H 0.359 0.641 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.398 0.602 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.108 0.153 8.200 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.205 1.205 6 H -0.218 1.218 7 C -0.368 4.368 8 H 0.108 0.892 9 N -0.389 5.389 10 C 0.068 3.932 11 C -0.171 4.171 12 C -0.157 4.157 13 C 0.044 3.956 14 N -0.372 5.372 15 C 0.326 3.674 16 O -0.412 6.412 17 C -0.163 4.163 18 H 0.140 0.860 19 C -0.138 4.138 20 C -0.202 4.202 21 C -0.168 4.168 22 C -0.150 4.150 23 C -0.162 4.162 24 C -0.160 4.160 25 H 0.069 0.931 26 H 0.193 0.807 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.232 0.768 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.856 -0.768 8.405 22.499 hybrid contribution 0.421 1.889 -0.186 1.944 sum 21.277 1.121 8.219 22.837 Atomic orbital electron populations 1.69698 1.05067 1.25673 1.57947 1.24656 0.95188 0.97042 1.02415 0.86601 0.79219 0.85359 0.77665 1.21182 1.20453 1.21801 1.19105 0.80746 0.94643 1.42301 0.89208 1.42826 1.03837 1.01990 1.90230 1.20218 0.90370 0.89309 0.93304 1.22079 0.99936 0.96655 0.98440 1.21749 0.94144 1.01228 0.98588 1.21079 0.92813 0.91881 0.89833 1.46111 1.51356 1.12035 1.27682 1.19627 0.78649 0.88652 0.80509 1.90686 1.62651 1.18687 1.69174 1.21998 1.03003 1.00666 0.90672 0.86017 1.22680 0.95797 1.00263 0.95011 1.21143 0.94714 1.03913 1.00383 1.22760 0.91109 1.01256 1.01680 1.22583 1.00349 0.90109 1.01920 1.21757 1.00145 1.00297 0.94005 1.21770 0.96726 0.98326 0.99168 0.93142 0.80693 0.92455 0.91405 0.93299 0.92798 0.91054 0.89838 0.76810 0.87611 0.87949 0.88630 0.88398 0.88557 0.88216 0.92086 0.91381 0.91788 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.26 13.97 55.49 0.78 -28.49 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 3 Si 0.88 21.71 27.74 -169.99 -4.71 16.99 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.57 10.41 -15.06 -0.16 -6.72 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 9 N -0.75 -16.89 4.08 -53.43 -0.22 -17.11 16 10 C 0.18 3.29 3.10 -67.94 -0.21 3.08 16 11 C -0.13 -2.30 5.61 -26.73 -0.15 -2.45 16 12 C -0.12 -2.01 5.34 -26.73 -0.14 -2.16 16 13 C 0.15 2.14 2.45 -67.93 -0.17 1.98 16 14 N -0.72 -9.22 5.08 -53.81 -0.27 -9.49 16 15 C 0.54 7.43 7.58 -10.99 -0.08 7.35 16 16 O -0.54 -9.25 15.91 5.56 0.09 -9.16 16 17 C -0.14 -1.51 6.19 -91.77 -0.57 -2.08 16 18 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 19 C -0.10 -0.98 10.24 -26.69 -0.27 -1.25 16 20 C -0.20 -2.10 5.06 -154.49 -0.78 -2.88 16 21 C -0.13 -1.07 10.53 -26.74 -0.28 -1.35 16 22 C -0.11 -1.14 10.16 -26.74 -0.27 -1.41 16 23 C -0.12 -1.71 5.22 -26.73 -0.14 -1.85 16 24 C -0.12 -1.81 5.61 -26.73 -0.15 -1.96 16 25 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 26 H 0.36 7.97 3.92 -40.82 -0.16 7.81 16 27 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.36 7.60 -51.93 -0.39 0.96 16 32 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 33 H 0.40 4.16 8.60 -40.82 -0.35 3.81 16 34 H 0.11 0.80 8.14 -51.92 -0.42 0.37 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.03 6.51 -51.93 -0.34 0.69 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 345.00 15.07 5.20 5.20 Total: -1.00 -32.66 345.00 -9.76 -42.42 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -7.14 Total: 11.37 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -3.47 Total: -11.73 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.28 Total: -55.09 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.66 -9.76 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026566750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.474 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds