Wall clock time and date at job start Tue Mar 31 2020 00:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47129 * 275.00076 * 10 9 7 12 12 C 1.53005 * 109.47027 * 299.99652 * 11 10 9 13 13 C 1.53000 * 109.47243 * 300.00223 * 12 11 10 14 14 N 1.46492 * 109.47508 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99887 * 84.99597 * 14 13 12 16 16 O 1.21279 * 120.00231 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00243 * 180.02562 * 15 14 13 18 18 H 1.08999 * 115.55255 * 325.58424 * 17 15 14 19 19 C 1.53001 * 117.49960 * 111.25472 * 17 15 14 20 20 C 1.52997 * 117.50332 * 179.91656 * 17 15 14 21 21 C 1.52986 * 138.59325 * 121.61916 * 20 17 15 22 22 C 1.52987 * 138.58711 * 23.39537 * 20 17 15 23 23 C 1.53005 * 109.47178 * 59.99291 * 13 12 11 24 24 C 1.52995 * 109.47630 * 154.99681 * 10 9 7 25 25 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 26 26 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47135 * 34.99720 * 10 9 7 28 28 H 1.09006 * 109.47229 * 59.99295 * 11 10 9 29 29 H 1.09002 * 109.47304 * 179.97438 * 11 10 9 30 30 H 1.08994 * 109.47246 * 179.97438 * 12 11 10 31 31 H 1.09002 * 109.47088 * 59.99855 * 12 11 10 32 32 H 1.09002 * 109.46778 * 299.99822 * 13 12 11 33 33 H 0.97003 * 120.00248 * 265.00098 * 14 13 12 34 34 H 1.09008 * 117.50016 * 214.97666 * 19 17 15 35 35 H 1.08993 * 117.50275 * 0.02562 * 19 17 15 36 36 H 1.09006 * 117.49892 * 336.59190 * 21 20 17 37 37 H 1.09002 * 117.50091 * 121.61639 * 21 20 17 38 38 H 1.09007 * 117.50454 * 238.38998 * 22 20 17 39 39 H 1.08995 * 117.50199 * 23.38875 * 22 20 17 40 40 H 1.08999 * 109.46918 * 179.97438 * 23 13 12 41 41 H 1.09002 * 109.46833 * 60.00565 * 23 13 12 42 42 H 1.09002 * 109.47248 * 180.02562 * 24 10 9 43 43 H 1.08997 * 109.47205 * 300.00376 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 4.2578 -2.9756 1.4380 12 6 5.0258 -1.9432 2.2659 13 6 6.4132 -1.7310 1.6569 14 7 7.1484 -0.7421 2.4491 15 6 7.8306 -1.1292 3.5451 16 8 7.8363 -2.2962 3.8752 17 6 8.5864 -0.1119 4.3605 18 1 9.0350 0.7047 3.7948 19 6 8.0572 0.2057 5.7605 20 6 9.3394 -0.6136 5.5942 21 6 10.7693 -0.6298 6.1379 22 6 9.9439 -1.9178 6.1177 23 6 6.2676 -1.2263 0.2198 24 6 5.4996 -2.2586 -0.6080 25 1 -0.4850 0.8401 0.0004 26 1 3.8646 -0.3620 0.0007 27 1 3.5651 -3.2062 -0.5887 28 1 3.2693 -3.1267 1.8720 29 1 4.8025 -3.9197 1.4380 30 1 5.1292 -2.3026 3.2897 31 1 4.4808 -0.9992 2.2659 32 1 6.9583 -2.6750 1.6569 33 1 7.1441 0.1912 2.1850 34 1 8.1579 1.2312 6.1160 35 1 7.1626 -0.3214 6.0919 36 1 11.5827 -0.5419 5.4175 37 1 10.9453 -0.1598 7.1055 38 1 9.5768 -2.2954 7.0722 39 1 10.2138 -2.6776 5.3843 40 1 7.2560 -1.0747 -0.2139 41 1 5.7226 -0.2823 0.2198 42 1 6.0445 -3.2027 -0.6084 43 1 5.3959 -1.8990 -1.6317 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026566750.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:34 Heat of formation + Delta-G solvation = 3.422802 kcal Electronic energy + Delta-G solvation = -21995.311064 eV Core-core repulsion = 18848.248329 eV Total energy + Delta-G solvation = -3147.062734 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.27476 -39.83867 -38.31384 -36.16830 -34.59001 -33.58928 -32.48543 -31.70170 -29.65235 -25.67503 -24.94948 -23.63278 -23.28291 -22.76185 -21.43739 -20.43157 -19.86600 -19.70785 -18.06185 -17.34212 -16.54264 -16.35559 -16.05135 -15.87592 -15.77604 -15.41927 -15.13956 -15.12724 -14.44122 -14.08586 -13.79000 -13.55603 -13.35358 -13.09582 -12.92552 -12.69033 -12.56495 -12.36385 -12.30246 -12.08604 -11.84448 -11.72293 -11.34323 -11.27007 -11.16583 -11.09573 -10.94807 -10.89549 -10.64342 -10.02004 -9.26054 -7.99212 -5.31097 1.35526 1.40975 1.48281 1.48460 2.06051 2.50422 2.73998 2.87404 3.31976 3.33151 3.65326 3.71568 3.81766 3.87654 3.89657 4.09118 4.11414 4.31435 4.37557 4.47852 4.57397 4.61494 4.62882 4.63934 4.74249 4.75994 4.79348 4.80402 4.95215 5.00955 5.01839 5.10880 5.20891 5.24446 5.26862 5.27196 5.43832 5.53578 5.59405 5.82413 6.25359 6.58748 7.12482 7.27289 7.89364 8.09575 9.23020 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023609 B = 0.004139 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.717814 B = 6763.022165 C = 7294.901075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.989 5.989 2 C -0.070 4.070 3 Si 0.952 3.048 4 H -0.280 1.280 5 H -0.245 1.245 6 H -0.299 1.299 7 C -0.222 4.222 8 H 0.052 0.948 9 N -0.743 5.743 10 C 0.169 3.831 11 C -0.125 4.125 12 C -0.111 4.111 13 C 0.156 3.844 14 N -0.713 5.713 15 C 0.534 3.466 16 O -0.577 6.577 17 C -0.145 4.145 18 H 0.152 0.848 19 C -0.095 4.095 20 C -0.223 4.223 21 C -0.103 4.103 22 C -0.134 4.134 23 C -0.117 4.117 24 C -0.114 4.114 25 H 0.256 0.744 26 H 0.366 0.634 27 H 0.044 0.956 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.413 0.587 34 H 0.133 0.867 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.748 1.971 8.072 26.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C -0.261 4.261 3 Si 0.779 3.221 4 H -0.206 1.206 5 H -0.169 1.169 6 H -0.226 1.226 7 C -0.354 4.354 8 H 0.070 0.930 9 N -0.388 5.388 10 C 0.062 3.938 11 C -0.166 4.166 12 C -0.150 4.150 13 C 0.052 3.948 14 N -0.364 5.364 15 C 0.322 3.678 16 O -0.457 6.457 17 C -0.165 4.165 18 H 0.169 0.831 19 C -0.132 4.132 20 C -0.224 4.224 21 C -0.140 4.140 22 C -0.171 4.171 23 C -0.155 4.155 24 C -0.152 4.152 25 H 0.064 0.936 26 H 0.201 0.799 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.249 0.751 34 H 0.151 0.849 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.135 0.865 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 24.559 1.046 8.267 25.934 hybrid contribution -0.757 1.142 -0.104 1.374 sum 23.802 2.188 8.162 25.258 Atomic orbital electron populations 1.69901 1.07271 1.26473 1.60392 1.25508 0.96081 1.01284 1.03207 0.85451 0.78969 0.79663 0.78019 1.20608 1.16895 1.22603 1.19046 0.82972 0.93169 1.40185 0.92975 1.42775 1.02047 1.03904 1.90054 1.20446 0.92343 0.87281 0.93772 1.21971 0.98718 0.98115 0.97759 1.21641 0.95687 0.99630 0.98010 1.20858 0.90998 0.92491 0.90461 1.46004 1.50562 1.12509 1.27282 1.20240 0.78327 0.88745 0.80480 1.90669 1.64145 1.20682 1.70184 1.22056 1.03130 1.00580 0.90760 0.83065 1.22743 0.94856 1.01399 0.94219 1.21404 0.96324 1.04292 1.00386 1.22861 0.89901 0.98663 1.02555 1.22599 1.02184 0.90575 1.01708 1.21718 1.01540 0.99199 0.93042 1.21706 0.94137 1.00241 0.99150 0.93570 0.79950 0.93773 0.94670 0.91022 0.94109 0.93129 0.90266 0.75113 0.84868 0.89798 0.87492 0.86453 0.88412 0.89884 0.88834 0.92216 0.89200 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.94 13.97 21.65 0.30 -63.63 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.95 44.59 27.74 68.60 1.90 46.50 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.24 -10.00 6.52 99.48 0.65 -9.35 16 6 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 7 C -0.22 -12.57 10.41 84.03 0.87 -11.70 16 8 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 9 N -0.74 -33.27 4.08 -322.96 -1.32 -34.59 16 10 C 0.17 6.16 3.10 44.99 0.14 6.30 16 11 C -0.13 -4.41 5.61 30.60 0.17 -4.24 16 12 C -0.11 -3.71 5.34 30.60 0.16 -3.55 16 13 C 0.16 4.19 2.45 44.99 0.11 4.30 16 14 N -0.71 -16.43 5.08 -442.55 -2.25 -18.68 16 15 C 0.53 13.85 7.58 87.66 0.66 14.51 16 16 O -0.58 -19.72 15.91 -3.03 -0.05 -19.77 16 17 C -0.14 -2.70 6.19 -11.54 -0.07 -2.77 16 18 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 19 C -0.10 -1.65 10.24 30.62 0.31 -1.33 16 20 C -0.22 -4.20 5.06 -52.17 -0.26 -4.46 16 21 C -0.10 -1.39 10.53 30.59 0.32 -1.07 16 22 C -0.13 -2.59 10.16 30.59 0.31 -2.28 16 23 C -0.12 -2.80 5.22 30.60 0.16 -2.64 16 24 C -0.11 -3.04 5.61 30.59 0.17 -2.86 16 25 H 0.26 15.77 8.31 -92.71 -0.77 14.99 16 26 H 0.37 15.44 3.92 -92.71 -0.36 15.07 16 27 H 0.04 1.72 8.08 -2.39 -0.02 1.70 16 28 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.89 7.60 -2.39 -0.02 1.88 16 32 H 0.08 2.26 7.58 -2.39 -0.02 2.24 16 33 H 0.41 7.19 8.60 -92.71 -0.80 6.39 16 34 H 0.13 1.54 8.14 -2.38 -0.02 1.53 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 36 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.06 1.56 6.51 -2.39 -0.02 1.55 16 42 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -73.88 345.00 1.91 -71.97 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -0.22 Total: 33.66 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 3.53 Total: -15.46 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -3.26 Total: -116.90 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.05 Total: -19.77 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.90 Total: 46.50 kcal Total: -73.88 1.91 -71.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026566750.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.393 kcal (2) G-P(sol) polarization free energy of solvation -73.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds