Wall clock time and date at job start Tue Mar 31 2020 00:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99869 * 2 1 4 4 H 1.48502 * 109.46984 * 270.00460 * 3 2 1 5 5 H 1.48499 * 109.46886 * 30.00080 * 3 2 1 6 6 H 1.48499 * 109.47108 * 150.00243 * 3 2 1 7 7 C 1.38810 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99673 * 359.97438 * 7 2 1 9 9 N 1.36931 * 120.00174 * 179.97438 * 7 2 1 10 10 C 1.46503 * 120.00412 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47380 * 205.00217 * 10 9 7 12 12 C 1.52996 * 109.46981 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47444 * 59.99494 * 12 11 10 14 14 N 1.46509 * 109.47041 * 60.00034 * 13 12 11 15 15 C 1.34770 * 119.99872 * 154.99967 * 14 13 12 16 16 O 1.21283 * 120.00414 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99962 * 180.02562 * 15 14 13 18 18 H 1.09000 * 115.55924 * 34.29352 * 17 15 14 19 19 C 1.53002 * 117.49668 * 248.60947 * 17 15 14 20 20 C 1.52993 * 60.03097 * 252.52155 * 19 17 15 21 21 C 1.52992 * 138.58906 * 229.10108 * 20 19 17 22 22 C 1.52996 * 138.58947 * 130.88203 * 20 19 17 23 23 C 1.52997 * 109.47071 * 300.00237 * 13 12 11 24 24 C 1.52991 * 109.47221 * 59.99937 * 23 13 12 25 25 H 0.96996 * 120.00239 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99948 * 359.97438 * 9 7 2 27 27 H 1.08999 * 109.46524 * 324.99866 * 10 9 7 28 28 H 1.08991 * 109.47377 * 59.99048 * 11 10 9 29 29 H 1.09007 * 109.46900 * 299.99618 * 11 10 9 30 30 H 1.08997 * 109.47006 * 299.99071 * 12 11 10 31 31 H 1.09005 * 109.47135 * 179.97438 * 12 11 10 32 32 H 1.09002 * 109.46848 * 179.97438 * 13 12 11 33 33 H 0.96995 * 119.99541 * 335.00238 * 14 13 12 34 34 H 1.09002 * 117.49918 * 145.01964 * 19 17 15 35 35 H 1.09002 * 117.49754 * 0.02562 * 19 17 15 36 36 H 1.08996 * 117.49738 * 336.59046 * 21 20 19 37 37 H 1.09004 * 117.50094 * 121.61400 * 21 20 19 38 38 H 1.09000 * 117.49782 * 238.38444 * 22 20 19 39 39 H 1.08995 * 117.50056 * 23.40220 * 22 20 19 40 40 H 1.09000 * 109.46741 * 179.97438 * 23 13 12 41 41 H 1.09003 * 109.47121 * 299.99223 * 23 13 12 42 42 H 1.09005 * 109.47176 * 179.97438 * 24 23 13 43 43 H 1.09001 * 109.47905 * 60.00090 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0022 11 6 5.4996 -2.2592 0.6071 12 6 6.2644 -3.5843 0.6064 13 6 6.4099 -4.0885 -0.8308 14 7 7.1455 -3.0998 -1.6231 15 6 7.8277 -3.4870 -2.7189 16 8 7.8331 -4.6540 -3.0491 17 6 8.5848 -2.4701 -3.5336 18 1 9.0323 -1.6530 -2.9677 19 6 8.0581 -2.1536 -4.9349 20 6 9.3394 -2.9727 -4.7669 21 6 10.7699 -2.9894 -5.3093 22 6 9.9441 -4.2773 -5.2895 23 6 5.0225 -4.3001 -1.4399 24 6 4.2577 -2.9750 -1.4394 25 1 -0.4850 0.8400 0.0004 26 1 3.8646 -0.3620 -0.0014 27 1 3.5651 -3.2067 0.5870 28 1 5.3959 -1.9003 1.6310 29 1 6.0467 -1.5232 0.0178 30 1 5.7171 -4.3199 1.1959 31 1 7.2530 -3.4334 1.0401 32 1 6.9552 -5.0324 -0.8311 33 1 7.1415 -2.1665 -1.3588 34 1 8.1592 -1.1283 -5.2909 35 1 7.1638 -2.6807 -5.2673 36 1 10.9468 -2.5199 -6.2769 37 1 11.5826 -2.9015 -4.5882 38 1 10.2134 -5.0367 -4.5554 39 1 9.5777 -4.6550 -6.2440 40 1 5.1262 -4.6589 -2.4639 41 1 4.4752 -5.0358 -0.8505 42 1 3.2694 -3.1257 -1.8738 43 1 4.8049 -2.2393 -2.0288 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026566751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:37 Heat of formation + Delta-G solvation = 23.584586 kcal Electronic energy + Delta-G solvation = -21948.276235 eV Core-core repulsion = 18802.087781 eV Total energy + Delta-G solvation = -3146.188454 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.31885 -38.66686 -37.20626 -34.75410 -33.03908 -32.47058 -30.96036 -30.51840 -28.12599 -24.52326 -23.25467 -22.59842 -22.32907 -21.04247 -20.74532 -19.31682 -19.01309 -17.53371 -17.28204 -15.79665 -15.39158 -15.23919 -15.08333 -14.76166 -14.62685 -14.08300 -13.70531 -13.51940 -12.94045 -12.63784 -12.62435 -12.34369 -11.97487 -11.89997 -11.81154 -11.68841 -11.26854 -10.97670 -10.91133 -10.47459 -10.41847 -10.31796 -10.24063 -10.19683 -10.06184 -9.77797 -9.69612 -9.58268 -8.96912 -8.84598 -7.26902 -5.77476 -3.12809 2.48374 3.01861 3.35174 3.37625 3.43620 3.53511 3.66782 4.08795 4.57508 4.57796 4.61062 4.83167 4.94799 4.98180 5.02409 5.23529 5.35390 5.39037 5.44002 5.44799 5.50206 5.50978 5.55997 5.63626 5.72463 5.77467 5.79064 5.82803 5.93269 5.96127 5.98287 6.15985 6.26572 6.38496 6.42077 6.56689 6.69987 6.89189 7.03617 7.56593 7.99508 8.27995 8.41844 9.20502 9.93053 10.12901 11.41082 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022110 B = 0.004047 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.083377 B = 6917.077231 C = 7545.519258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.182 3.818 11 C -0.128 4.128 12 C -0.122 4.122 13 C 0.148 3.852 14 N -0.715 5.715 15 C 0.541 3.459 16 O -0.539 6.539 17 C -0.143 4.143 18 H 0.122 0.878 19 C -0.099 4.099 20 C -0.201 4.201 21 C -0.132 4.132 22 C -0.113 4.113 23 C -0.128 4.128 24 C -0.132 4.132 25 H 0.259 0.741 26 H 0.359 0.641 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.400 0.600 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.189 -5.688 -6.120 22.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.391 5.391 10 C 0.073 3.927 11 C -0.166 4.166 12 C -0.160 4.160 13 C 0.044 3.956 14 N -0.367 5.367 15 C 0.327 3.673 16 O -0.416 6.416 17 C -0.164 4.164 18 H 0.140 0.860 19 C -0.136 4.136 20 C -0.201 4.201 21 C -0.168 4.168 22 C -0.150 4.150 23 C -0.167 4.167 24 C -0.172 4.172 25 H 0.069 0.931 26 H 0.192 0.808 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.236 0.764 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 20.914 -6.594 -6.313 22.819 hybrid contribution 0.412 1.853 0.174 1.906 sum 21.326 -4.741 -6.138 22.693 Atomic orbital electron populations 1.69700 1.05114 1.25776 1.57710 1.24678 0.95220 0.97178 1.02191 0.86546 0.79169 0.85079 0.77690 1.21178 1.21811 1.20386 1.19082 0.80650 0.94664 1.42711 0.89244 1.42787 1.03983 1.02023 1.90343 1.20200 0.90102 0.89082 0.93309 1.21852 0.97038 0.96218 1.01540 1.21784 1.00532 0.98568 0.95119 1.20981 0.92607 0.91879 0.90177 1.46085 1.50940 1.12171 1.27482 1.19625 0.78589 0.88589 0.80505 1.90674 1.62943 1.18713 1.69293 1.22003 1.02996 1.00655 0.90710 0.86023 1.22668 0.95734 1.00318 0.94916 1.21146 0.94730 1.03820 1.00434 1.22758 0.91141 1.01225 1.01705 1.22578 1.00417 0.90103 1.01885 1.21913 0.94849 0.99004 1.00944 1.22168 0.99862 0.95123 1.00062 0.93093 0.80823 0.92686 0.91407 0.92779 0.90191 0.91773 0.89945 0.76413 0.87573 0.87940 0.88401 0.88643 0.88269 0.88589 0.92204 0.91271 0.91690 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.27 13.97 55.49 0.78 -28.50 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 21.82 27.73 -169.99 -4.71 17.11 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 7 C -0.24 -6.69 10.41 -15.06 -0.16 -6.85 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 9 N -0.75 -17.13 4.93 -53.43 -0.26 -17.39 16 10 C 0.18 3.30 2.77 -67.93 -0.19 3.12 16 11 C -0.13 -1.80 5.22 -26.73 -0.14 -1.94 16 12 C -0.12 -1.40 5.61 -26.73 -0.15 -1.55 16 13 C 0.15 1.86 2.78 -67.93 -0.19 1.68 16 14 N -0.71 -8.59 4.23 -53.80 -0.23 -8.82 16 15 C 0.54 7.17 7.58 -10.99 -0.08 7.08 16 16 O -0.54 -8.89 15.91 5.56 0.09 -8.80 16 17 C -0.14 -1.52 6.19 -91.73 -0.57 -2.09 16 18 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 19 C -0.10 -0.99 10.23 -26.73 -0.27 -1.27 16 20 C -0.20 -2.10 5.06 -154.48 -0.78 -2.88 16 21 C -0.13 -1.08 10.53 -26.73 -0.28 -1.36 16 22 C -0.11 -1.13 10.16 -26.73 -0.27 -1.40 16 23 C -0.13 -1.84 5.60 -26.74 -0.15 -1.99 16 24 C -0.13 -2.24 5.35 -26.74 -0.14 -2.39 16 25 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.36 8.04 5.66 -40.82 -0.23 7.81 16 27 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.71 6.51 -51.92 -0.34 0.37 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.09 7.58 -51.93 -0.39 0.69 16 33 H 0.40 4.26 6.87 -40.82 -0.28 3.98 16 34 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.05 0.89 7.60 -51.93 -0.39 0.50 16 LS Contribution 345.01 15.07 5.20 5.20 Total: -1.00 -32.69 345.01 -9.76 -42.45 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -7.14 Total: 10.60 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -3.47 Total: -11.85 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.28 Total: -54.70 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.69 -9.76 -42.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026566751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.036 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds