Wall clock time and date at job start Tue Mar 31 2020 00:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99869 * 2 1 4 4 H 1.48502 * 109.46984 * 270.00460 * 3 2 1 5 5 H 1.48499 * 109.46886 * 30.00080 * 3 2 1 6 6 H 1.48499 * 109.47108 * 150.00243 * 3 2 1 7 7 C 1.38810 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99673 * 359.97438 * 7 2 1 9 9 N 1.36931 * 120.00174 * 179.97438 * 7 2 1 10 10 C 1.46503 * 120.00412 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47380 * 205.00217 * 10 9 7 12 12 C 1.52996 * 109.46981 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47444 * 59.99494 * 12 11 10 14 14 N 1.46509 * 109.47041 * 60.00034 * 13 12 11 15 15 C 1.34770 * 119.99872 * 154.99967 * 14 13 12 16 16 O 1.21283 * 120.00414 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99962 * 180.02562 * 15 14 13 18 18 H 1.09000 * 115.55924 * 34.29352 * 17 15 14 19 19 C 1.53002 * 117.49668 * 248.60947 * 17 15 14 20 20 C 1.52993 * 60.03097 * 252.52155 * 19 17 15 21 21 C 1.52992 * 138.58906 * 229.10108 * 20 19 17 22 22 C 1.52996 * 138.58947 * 130.88203 * 20 19 17 23 23 C 1.52997 * 109.47071 * 300.00237 * 13 12 11 24 24 C 1.52991 * 109.47221 * 59.99937 * 23 13 12 25 25 H 0.96996 * 120.00239 * 359.97438 * 1 2 3 26 26 H 0.97004 * 119.99948 * 359.97438 * 9 7 2 27 27 H 1.08999 * 109.46524 * 324.99866 * 10 9 7 28 28 H 1.08991 * 109.47377 * 59.99048 * 11 10 9 29 29 H 1.09007 * 109.46900 * 299.99618 * 11 10 9 30 30 H 1.08997 * 109.47006 * 299.99071 * 12 11 10 31 31 H 1.09005 * 109.47135 * 179.97438 * 12 11 10 32 32 H 1.09002 * 109.46848 * 179.97438 * 13 12 11 33 33 H 0.96995 * 119.99541 * 335.00238 * 14 13 12 34 34 H 1.09002 * 117.49918 * 145.01964 * 19 17 15 35 35 H 1.09002 * 117.49754 * 0.02562 * 19 17 15 36 36 H 1.08996 * 117.49738 * 336.59046 * 21 20 19 37 37 H 1.09004 * 117.50094 * 121.61400 * 21 20 19 38 38 H 1.09000 * 117.49782 * 238.38444 * 22 20 19 39 39 H 1.08995 * 117.50056 * 23.40220 * 22 20 19 40 40 H 1.09000 * 109.46741 * 179.97438 * 23 13 12 41 41 H 1.09003 * 109.47121 * 299.99223 * 23 13 12 42 42 H 1.09005 * 109.47176 * 179.97438 * 24 23 13 43 43 H 1.09001 * 109.47905 * 60.00090 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0022 11 6 5.4996 -2.2592 0.6071 12 6 6.2644 -3.5843 0.6064 13 6 6.4099 -4.0885 -0.8308 14 7 7.1455 -3.0998 -1.6231 15 6 7.8277 -3.4870 -2.7189 16 8 7.8331 -4.6540 -3.0491 17 6 8.5848 -2.4701 -3.5336 18 1 9.0323 -1.6530 -2.9677 19 6 8.0581 -2.1536 -4.9349 20 6 9.3394 -2.9727 -4.7669 21 6 10.7699 -2.9894 -5.3093 22 6 9.9441 -4.2773 -5.2895 23 6 5.0225 -4.3001 -1.4399 24 6 4.2577 -2.9750 -1.4394 25 1 -0.4850 0.8400 0.0004 26 1 3.8646 -0.3620 -0.0014 27 1 3.5651 -3.2067 0.5870 28 1 5.3959 -1.9003 1.6310 29 1 6.0467 -1.5232 0.0178 30 1 5.7171 -4.3199 1.1959 31 1 7.2530 -3.4334 1.0401 32 1 6.9552 -5.0324 -0.8311 33 1 7.1415 -2.1665 -1.3588 34 1 8.1592 -1.1283 -5.2909 35 1 7.1638 -2.6807 -5.2673 36 1 10.9468 -2.5199 -6.2769 37 1 11.5826 -2.9015 -4.5882 38 1 10.2134 -5.0367 -4.5554 39 1 9.5777 -4.6550 -6.2440 40 1 5.1262 -4.6589 -2.4639 41 1 4.4752 -5.0358 -0.8505 42 1 3.2694 -3.1257 -1.8738 43 1 4.8049 -2.2393 -2.0288 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026566751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:37 Heat of formation + Delta-G solvation = 3.098755 kcal Electronic energy + Delta-G solvation = -21949.164567 eV Core-core repulsion = 18802.087781 eV Total energy + Delta-G solvation = -3147.076786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.35372 -39.73372 -38.20518 -36.34707 -34.34666 -33.58811 -32.65317 -31.72373 -29.61839 -25.72888 -24.87955 -23.54394 -23.27615 -22.39175 -21.81784 -20.39227 -20.13644 -19.40482 -18.22331 -16.90655 -16.82429 -16.36337 -16.08660 -15.86362 -15.70113 -15.51218 -14.87937 -14.78284 -14.68678 -14.35778 -13.67798 -13.51367 -13.28815 -13.12540 -12.91229 -12.85338 -12.63494 -12.35818 -12.18864 -12.06537 -11.81890 -11.72363 -11.41520 -11.18015 -11.13675 -11.08027 -10.93246 -10.86209 -10.68757 -9.98747 -9.28186 -8.00528 -5.33714 1.38349 1.43110 1.50566 1.51482 2.11650 2.50550 2.75717 2.89564 3.30740 3.34365 3.52990 3.75175 3.84062 3.88548 3.90175 4.10140 4.22350 4.27408 4.36033 4.49421 4.57405 4.61235 4.63005 4.66048 4.75234 4.77066 4.80374 4.81647 4.99286 5.00409 5.02113 5.09227 5.14907 5.23544 5.27450 5.29039 5.48564 5.58159 5.62355 5.80056 6.24020 6.61158 7.10819 7.29962 7.87323 8.07111 9.21484 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022110 B = 0.004047 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.083377 B = 6917.077231 C = 7545.519258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.989 5.989 2 C -0.070 4.070 3 Si 0.959 3.041 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.245 1.245 7 C -0.228 4.228 8 H 0.050 0.950 9 N -0.751 5.751 10 C 0.176 3.824 11 C -0.119 4.119 12 C -0.110 4.110 13 C 0.152 3.848 14 N -0.707 5.707 15 C 0.536 3.464 16 O -0.578 6.578 17 C -0.146 4.146 18 H 0.149 0.851 19 C -0.097 4.097 20 C -0.222 4.222 21 C -0.105 4.105 22 C -0.132 4.132 23 C -0.120 4.120 24 C -0.120 4.120 25 H 0.257 0.743 26 H 0.366 0.634 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.410 0.590 34 H 0.130 0.870 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.027 0.973 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.721 -4.178 -5.812 25.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C -0.260 4.260 3 Si 0.786 3.214 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.169 1.169 7 C -0.359 4.359 8 H 0.069 0.931 9 N -0.393 5.393 10 C 0.068 3.932 11 C -0.157 4.157 12 C -0.148 4.148 13 C 0.048 3.952 14 N -0.359 5.359 15 C 0.324 3.676 16 O -0.458 6.458 17 C -0.166 4.166 18 H 0.167 0.833 19 C -0.134 4.134 20 C -0.223 4.223 21 C -0.142 4.142 22 C -0.168 4.168 23 C -0.159 4.159 24 C -0.160 4.160 25 H 0.065 0.935 26 H 0.199 0.801 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.247 0.753 34 H 0.148 0.852 35 H 0.102 0.898 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.046 0.954 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 24.506 -5.100 -5.993 25.738 hybrid contribution -0.745 1.224 0.043 1.434 sum 23.761 -3.876 -5.950 24.799 Atomic orbital electron populations 1.69902 1.07352 1.26630 1.60067 1.25564 0.96128 1.01493 1.02865 0.85353 0.78838 0.79236 0.78006 1.20622 1.22612 1.16879 1.19015 0.82922 0.93159 1.40770 0.93145 1.42775 1.02239 1.04075 1.90249 1.20435 0.92129 0.86808 0.93824 1.21750 0.94273 0.98197 1.01477 1.21730 1.01726 0.97138 0.94234 1.20893 0.91047 0.92397 0.90867 1.46032 1.50247 1.12536 1.27092 1.20140 0.78350 0.88595 0.80562 1.90659 1.64344 1.20538 1.70260 1.22076 1.03117 1.00668 0.90777 0.83349 1.22709 0.94975 1.01304 0.94444 1.21391 0.96211 1.04295 1.00387 1.22863 0.89968 0.98817 1.02536 1.22600 1.02014 0.90510 1.01712 1.21824 0.96078 0.97419 1.00587 1.21970 0.98296 0.96697 0.99066 0.93474 0.80057 0.94361 0.91066 0.91043 0.89540 0.88881 0.90006 0.75254 0.85232 0.89765 0.86595 0.87477 0.89718 0.88417 0.93549 0.90789 0.95414 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.82 13.97 21.65 0.30 -63.52 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 3 Si 0.96 44.65 27.73 68.60 1.90 46.55 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.24 -9.95 6.52 99.48 0.65 -9.30 16 7 C -0.23 -12.89 10.41 84.03 0.87 -12.01 16 8 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 9 N -0.75 -33.61 4.93 -322.95 -1.59 -35.20 16 10 C 0.18 6.21 2.77 44.99 0.12 6.33 16 11 C -0.12 -2.95 5.22 30.59 0.16 -2.79 16 12 C -0.11 -2.15 5.61 30.59 0.17 -1.98 16 13 C 0.15 3.52 2.78 44.99 0.13 3.65 16 14 N -0.71 -15.23 4.23 -442.52 -1.87 -17.11 16 15 C 0.54 13.37 7.58 87.66 0.66 14.03 16 16 O -0.58 -18.86 15.91 -3.04 -0.05 -18.91 16 17 C -0.15 -2.76 6.19 -11.51 -0.07 -2.83 16 18 H 0.15 1.97 8.14 -2.39 -0.02 1.95 16 19 C -0.10 -1.76 10.23 30.59 0.31 -1.45 16 20 C -0.22 -4.22 5.06 -52.16 -0.26 -4.49 16 21 C -0.11 -1.44 10.53 30.59 0.32 -1.12 16 22 C -0.13 -2.51 10.16 30.59 0.31 -2.20 16 23 C -0.12 -3.40 5.60 30.59 0.17 -3.23 16 24 C -0.12 -4.08 5.35 30.59 0.16 -3.92 16 25 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 26 H 0.37 15.39 5.66 -92.71 -0.52 14.87 16 27 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 1.55 6.51 -2.38 -0.02 1.54 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.08 2.00 7.58 -2.39 -0.02 1.98 16 33 H 0.41 7.24 6.87 -92.71 -0.64 6.60 16 34 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.06 1.86 7.60 -2.39 -0.02 1.84 16 Total: -1.00 -73.60 345.01 2.01 -71.59 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: -0.22 Total: 32.22 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 3.53 Total: -15.63 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -3.16 Total: -115.83 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.05 Total: -18.91 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.90 Total: 46.55 kcal Total: -73.60 2.01 -71.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026566751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.691 kcal (2) G-P(sol) polarization free energy of solvation -73.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds