Wall clock time and date at job start Tue Mar 31 2020 00:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99993 * 2 1 4 4 H 1.48507 * 109.46725 * 275.36674 * 3 2 1 5 5 H 1.48501 * 109.47090 * 35.36418 * 3 2 1 6 6 H 1.48495 * 109.47443 * 155.36949 * 3 2 1 7 7 C 1.38815 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00399 * 341.40779 * 7 2 1 9 9 N 1.36941 * 119.99494 * 161.40844 * 7 2 1 10 10 C 1.47525 * 125.63809 * 326.92763 * 9 7 2 11 11 C 1.54916 * 104.78096 * 155.91677 * 10 9 7 12 12 C 1.55154 * 101.61555 * 37.00488 * 11 10 9 13 13 C 1.47024 * 125.64282 * 146.97141 * 9 7 2 14 14 H 1.09000 * 109.88564 * 300.43163 * 13 9 7 15 15 C 1.52997 * 109.88418 * 61.60498 * 13 9 7 16 16 N 1.46503 * 109.46977 * 297.19849 * 15 13 9 17 17 C 1.34775 * 119.99878 * 175.27664 * 16 15 13 18 18 O 1.21281 * 119.99820 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00008 * 179.97438 * 17 16 15 20 20 H 1.08999 * 115.52445 * 325.50336 * 19 17 16 21 21 C 1.53002 * 117.45870 * 110.95551 * 19 17 16 22 22 H 1.09003 * 119.29662 * 356.30334 * 21 19 17 23 23 C 1.54257 * 118.19993 * 201.21477 * 21 19 17 24 24 C 1.54882 * 104.19924 * 272.21495 * 23 21 19 25 25 C 1.54894 * 102.74909 * 37.94313 * 24 23 21 26 26 C 1.53001 * 117.45908 * 179.97438 * 19 17 16 27 27 H 1.08992 * 119.29783 * 4.64747 * 26 19 17 28 28 H 0.97007 * 120.00029 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.41140 * 37.09020 * 10 9 7 30 30 H 1.08993 * 110.37027 * 274.73118 * 10 9 7 31 31 H 1.08994 * 111.00127 * 278.91112 * 11 10 9 32 32 H 1.08997 * 111.00013 * 155.09822 * 11 10 9 33 33 H 1.08998 * 110.72013 * 82.84168 * 12 11 10 34 34 H 1.08999 * 110.71911 * 205.93867 * 12 11 10 35 35 H 1.08997 * 109.47063 * 57.19578 * 15 13 9 36 36 H 1.09001 * 109.47118 * 177.19706 * 15 13 9 37 37 H 0.96995 * 119.99805 * 355.27607 * 16 15 13 38 38 H 1.09003 * 110.48511 * 153.53602 * 23 21 19 39 39 H 1.09000 * 110.59918 * 30.95094 * 23 21 19 40 40 H 1.09005 * 110.76137 * 279.62872 * 24 23 21 41 41 H 1.08997 * 110.76159 * 156.25621 * 24 23 21 42 42 H 1.08999 * 110.48627 * 203.38166 * 25 24 23 43 43 H 1.08995 * 110.48595 * 80.73792 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3842 2.1119 -1.3940 5 1 1.5089 2.6173 0.8103 6 1 3.5998 1.4102 0.5835 7 6 2.0102 -1.2022 0.0005 8 1 1.5125 -2.1130 0.2991 9 7 3.3260 -1.2332 -0.3776 10 6 3.9485 -0.3657 -1.3956 11 6 5.4523 -0.3369 -1.0242 12 6 5.6822 -1.7926 -0.5390 13 6 4.3518 -2.1371 0.1632 14 1 4.4500 -1.9857 1.2381 15 6 3.9708 -3.5900 -0.1279 16 7 2.7148 -3.9116 0.5543 17 6 2.1331 -5.1124 0.3644 18 8 2.6496 -5.9269 -0.3709 19 6 0.8414 -5.4434 1.0667 20 1 0.7287 -5.0224 2.0657 21 6 -0.4181 -5.5651 0.2066 22 1 -0.3578 -5.3522 -0.8607 23 6 -1.7892 -5.4047 0.8950 24 6 -2.1395 -6.8327 1.3816 25 6 -0.7670 -7.3828 1.8431 26 6 0.2316 -6.8228 0.8088 27 1 0.7775 -7.5416 0.1979 28 1 -0.4850 0.8401 -0.0004 29 1 3.5270 0.6384 -1.3486 30 1 3.8115 -0.7895 -2.3903 31 1 5.6431 0.3768 -0.2229 32 1 6.0660 -0.1145 -1.8971 33 1 5.8555 -2.4581 -1.3846 34 1 6.5149 -1.8381 0.1629 35 1 3.8454 -3.7245 -1.2023 36 1 4.7592 -4.2514 0.2314 37 1 2.3019 -3.2603 1.1426 38 1 -2.5346 -5.0508 0.1827 39 1 -1.7161 -4.7207 1.7406 40 1 -2.5407 -7.4319 0.5642 41 1 -2.8408 -6.7957 2.2152 42 1 -0.7664 -8.4726 1.8227 43 1 -0.5265 -7.0189 2.8419 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027807246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:24 Heat of formation + Delta-G solvation = 11.832005 kcal Electronic energy + Delta-G solvation = -22384.694200 eV Core-core repulsion = 19237.996116 eV Total energy + Delta-G solvation = -3146.698084 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.03724 -38.50470 -37.50692 -33.93422 -32.68225 -31.63931 -29.99792 -29.39759 -28.10868 -25.41529 -24.23461 -22.77553 -20.98019 -20.44353 -19.85982 -19.51009 -19.25376 -17.48866 -16.40615 -16.19773 -15.58887 -14.88553 -14.83763 -14.44864 -14.27073 -13.58629 -13.13795 -13.10292 -12.98779 -12.62337 -12.51022 -12.29445 -11.95639 -11.36841 -11.33724 -11.29240 -11.18959 -11.05031 -10.92738 -10.78721 -10.70834 -10.47905 -10.22383 -9.88475 -9.84187 -9.64980 -9.52541 -9.20952 -8.62777 -8.33087 -6.92172 -6.04631 -3.46325 2.95963 3.28016 3.42027 3.46584 3.63503 4.04471 4.46769 4.71340 4.85313 4.89357 4.92866 5.12292 5.29747 5.32811 5.35319 5.42478 5.43782 5.52639 5.54546 5.58508 5.70865 5.82560 5.83600 5.89754 5.93034 6.06686 6.09107 6.10803 6.21662 6.24253 6.25626 6.33766 6.38100 6.45021 6.50858 6.54121 6.82407 6.84621 7.10182 7.79403 8.17270 8.26635 8.73361 8.83052 9.59556 10.17265 11.09649 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018712 B = 0.005474 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.984240 B = 5114.079164 C = 6380.291659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.033 3.967 3 Si 0.889 3.111 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.256 4.256 8 H 0.094 0.906 9 N -0.602 5.602 10 C 0.118 3.882 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.144 3.856 14 H 0.048 0.952 15 C 0.117 3.883 16 N -0.703 5.703 17 C 0.540 3.460 18 O -0.563 6.563 19 C -0.157 4.157 20 H 0.117 0.883 21 C -0.126 4.126 22 H 0.113 0.887 23 C -0.096 4.096 24 C -0.123 4.123 25 C -0.096 4.096 26 C -0.139 4.139 27 H 0.118 0.882 28 H 0.264 0.736 29 H 0.040 0.960 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.414 0.586 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 -8.660 3.219 9.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.168 4.168 3 Si 0.721 3.279 4 H -0.217 1.217 5 H -0.233 1.233 6 H -0.195 1.195 7 C -0.384 4.384 8 H 0.111 0.889 9 N -0.328 5.328 10 C -0.006 4.006 11 C -0.174 4.174 12 C -0.160 4.160 13 C 0.036 3.964 14 H 0.066 0.934 15 C -0.009 4.009 16 N -0.356 5.356 17 C 0.326 3.674 18 O -0.443 6.443 19 C -0.178 4.178 20 H 0.135 0.865 21 C -0.145 4.145 22 H 0.131 0.869 23 C -0.133 4.133 24 C -0.160 4.160 25 C -0.133 4.133 26 C -0.158 4.158 27 H 0.136 0.864 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.254 0.746 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.639 -9.107 2.748 9.872 hybrid contribution 0.255 1.511 0.141 1.539 sum 2.894 -7.596 2.889 8.627 Atomic orbital electron populations 1.69814 1.05716 1.26752 1.51869 1.25359 0.95175 0.97829 0.98413 0.86712 0.80072 0.84233 0.76870 1.21670 1.23267 1.19489 1.18697 0.82818 0.94225 1.42638 0.88882 1.44728 1.05926 1.41081 1.41056 1.21896 0.90865 0.94936 0.92896 1.22775 0.97471 0.96604 1.00561 1.22487 0.96524 0.96851 1.00090 1.21262 0.88885 0.89277 0.96926 0.93418 1.21910 0.84787 0.96785 0.97420 1.46213 1.25154 1.15900 1.48311 1.19531 0.84762 0.81885 0.81190 1.90617 1.65380 1.49062 1.39221 1.22315 0.92873 1.01591 1.01057 0.86529 1.23136 0.90757 1.01655 0.98971 0.86875 1.21980 0.94490 0.96689 1.00171 1.22697 0.96752 0.96105 1.00466 1.21992 0.93443 1.00037 0.97828 1.23211 1.00793 0.90003 1.01762 0.86386 0.92633 0.94189 0.95082 0.91577 0.91536 0.91277 0.91383 0.91892 0.92959 0.74625 0.90837 0.90879 0.91375 0.91406 0.91251 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 13.97 55.49 0.78 -25.53 16 2 C 0.03 0.91 5.45 -17.43 -0.09 0.82 16 3 Si 0.89 21.88 24.74 -169.99 -4.21 17.67 16 4 H -0.29 -7.07 6.88 56.52 0.39 -6.68 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.23 16 6 H -0.27 -6.42 6.98 56.52 0.39 -6.03 16 7 C -0.26 -6.68 9.55 -15.06 -0.14 -6.83 16 8 H 0.09 2.49 5.29 -52.49 -0.28 2.21 16 9 N -0.60 -13.62 2.72 -162.49 -0.44 -14.07 16 10 C 0.12 2.49 6.19 -2.47 -0.02 2.47 16 11 C -0.14 -2.25 7.08 -24.58 -0.17 -2.43 16 12 C -0.12 -1.85 6.48 -24.90 -0.16 -2.01 16 13 C 0.14 2.67 3.33 -66.95 -0.22 2.45 16 14 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 15 C 0.12 2.16 5.16 -4.04 -0.02 2.14 16 16 N -0.70 -13.45 4.46 -60.29 -0.27 -13.72 16 17 C 0.54 10.40 7.61 -10.98 -0.08 10.32 16 18 O -0.56 -12.28 16.32 5.56 0.09 -12.19 16 19 C -0.16 -2.55 5.74 -91.77 -0.53 -3.07 16 20 H 0.12 1.72 8.14 -51.93 -0.42 1.30 16 21 C -0.13 -1.96 6.64 -89.53 -0.59 -2.56 16 22 H 0.11 1.93 8.14 -51.93 -0.42 1.50 16 23 C -0.10 -1.26 6.62 -25.08 -0.17 -1.42 16 24 C -0.12 -1.31 6.91 -24.74 -0.17 -1.49 16 25 C -0.10 -1.07 6.63 -25.06 -0.17 -1.24 16 26 C -0.14 -1.99 6.39 -89.51 -0.57 -2.56 16 27 H 0.12 1.81 7.78 -51.93 -0.40 1.40 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.04 0.92 3.01 -51.93 -0.16 0.76 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.41 8.09 5.99 -40.82 -0.24 7.84 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 333.32 15.07 5.02 5.02 Total: -1.00 -30.60 333.32 -9.13 -39.72 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.99 Total: 8.49 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -3.11 Total: -5.40 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.06 Total: -53.31 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.21 Total: 17.67 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.60 -9.13 -39.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027807246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.556 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds