Wall clock time and date at job start Tue Mar 31 2020 00:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99993 * 2 1 4 4 H 1.48507 * 109.46725 * 275.36674 * 3 2 1 5 5 H 1.48501 * 109.47090 * 35.36418 * 3 2 1 6 6 H 1.48495 * 109.47443 * 155.36949 * 3 2 1 7 7 C 1.38815 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00399 * 341.40779 * 7 2 1 9 9 N 1.36941 * 119.99494 * 161.40844 * 7 2 1 10 10 C 1.47525 * 125.63809 * 326.92763 * 9 7 2 11 11 C 1.54916 * 104.78096 * 155.91677 * 10 9 7 12 12 C 1.55154 * 101.61555 * 37.00488 * 11 10 9 13 13 C 1.47024 * 125.64282 * 146.97141 * 9 7 2 14 14 H 1.09000 * 109.88564 * 300.43163 * 13 9 7 15 15 C 1.52997 * 109.88418 * 61.60498 * 13 9 7 16 16 N 1.46503 * 109.46977 * 297.19849 * 15 13 9 17 17 C 1.34775 * 119.99878 * 175.27664 * 16 15 13 18 18 O 1.21281 * 119.99820 * 0.02562 * 17 16 15 19 19 C 1.50703 * 120.00008 * 179.97438 * 17 16 15 20 20 H 1.08999 * 115.52445 * 325.50336 * 19 17 16 21 21 C 1.53002 * 117.45870 * 110.95551 * 19 17 16 22 22 H 1.09003 * 119.29662 * 356.30334 * 21 19 17 23 23 C 1.54257 * 118.19993 * 201.21477 * 21 19 17 24 24 C 1.54882 * 104.19924 * 272.21495 * 23 21 19 25 25 C 1.54894 * 102.74909 * 37.94313 * 24 23 21 26 26 C 1.53001 * 117.45908 * 179.97438 * 19 17 16 27 27 H 1.08992 * 119.29783 * 4.64747 * 26 19 17 28 28 H 0.97007 * 120.00029 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.41140 * 37.09020 * 10 9 7 30 30 H 1.08993 * 110.37027 * 274.73118 * 10 9 7 31 31 H 1.08994 * 111.00127 * 278.91112 * 11 10 9 32 32 H 1.08997 * 111.00013 * 155.09822 * 11 10 9 33 33 H 1.08998 * 110.72013 * 82.84168 * 12 11 10 34 34 H 1.08999 * 110.71911 * 205.93867 * 12 11 10 35 35 H 1.08997 * 109.47063 * 57.19578 * 15 13 9 36 36 H 1.09001 * 109.47118 * 177.19706 * 15 13 9 37 37 H 0.96995 * 119.99805 * 355.27607 * 16 15 13 38 38 H 1.09003 * 110.48511 * 153.53602 * 23 21 19 39 39 H 1.09000 * 110.59918 * 30.95094 * 23 21 19 40 40 H 1.09005 * 110.76137 * 279.62872 * 24 23 21 41 41 H 1.08997 * 110.76159 * 156.25621 * 24 23 21 42 42 H 1.08999 * 110.48627 * 203.38166 * 25 24 23 43 43 H 1.08995 * 110.48595 * 80.73792 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3842 2.1119 -1.3940 5 1 1.5089 2.6173 0.8103 6 1 3.5998 1.4102 0.5835 7 6 2.0102 -1.2022 0.0005 8 1 1.5125 -2.1130 0.2991 9 7 3.3260 -1.2332 -0.3776 10 6 3.9485 -0.3657 -1.3956 11 6 5.4523 -0.3369 -1.0242 12 6 5.6822 -1.7926 -0.5390 13 6 4.3518 -2.1371 0.1632 14 1 4.4500 -1.9857 1.2381 15 6 3.9708 -3.5900 -0.1279 16 7 2.7148 -3.9116 0.5543 17 6 2.1331 -5.1124 0.3644 18 8 2.6496 -5.9269 -0.3709 19 6 0.8414 -5.4434 1.0667 20 1 0.7287 -5.0224 2.0657 21 6 -0.4181 -5.5651 0.2066 22 1 -0.3578 -5.3522 -0.8607 23 6 -1.7892 -5.4047 0.8950 24 6 -2.1395 -6.8327 1.3816 25 6 -0.7670 -7.3828 1.8431 26 6 0.2316 -6.8228 0.8088 27 1 0.7775 -7.5416 0.1979 28 1 -0.4850 0.8401 -0.0004 29 1 3.5270 0.6384 -1.3486 30 1 3.8115 -0.7895 -2.3903 31 1 5.6431 0.3768 -0.2229 32 1 6.0660 -0.1145 -1.8971 33 1 5.8555 -2.4581 -1.3846 34 1 6.5149 -1.8381 0.1629 35 1 3.8454 -3.7245 -1.2023 36 1 4.7592 -4.2514 0.2314 37 1 2.3019 -3.2603 1.1426 38 1 -2.5346 -5.0508 0.1827 39 1 -1.7161 -4.7207 1.7406 40 1 -2.5407 -7.4319 0.5642 41 1 -2.8408 -6.7957 2.2152 42 1 -0.7664 -8.4726 1.8227 43 1 -0.5265 -7.0189 2.8419 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027807246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:23 Heat of formation + Delta-G solvation = -6.687349 kcal Electronic energy + Delta-G solvation = -22385.497259 eV Core-core repulsion = 19237.996116 eV Total energy + Delta-G solvation = -3147.501143 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.39324 -39.94210 -38.98203 -35.50964 -34.62911 -32.76035 -31.77611 -30.88426 -29.13531 -26.92137 -25.98151 -24.21950 -22.39913 -21.53444 -21.44139 -20.77217 -20.62681 -19.16516 -18.03252 -17.87250 -17.05980 -16.50391 -16.16029 -15.83438 -15.56931 -15.24199 -14.84073 -14.52528 -14.24828 -14.03874 -13.92762 -13.73147 -13.62504 -13.05597 -12.96001 -12.67854 -12.44779 -12.30208 -12.24539 -12.04998 -11.97271 -11.73829 -11.68494 -11.53280 -11.35519 -11.09604 -10.96488 -10.67057 -10.58933 -9.93446 -8.80297 -8.15107 -5.52594 1.30709 1.40401 1.47424 1.51212 2.22428 2.44987 2.77016 3.05478 3.34624 3.54369 3.76058 3.76857 3.89383 3.97992 4.05512 4.14463 4.19450 4.25237 4.30597 4.45848 4.48832 4.53246 4.65000 4.68629 4.71879 4.81870 4.83545 4.96581 4.98923 4.99061 5.12744 5.15878 5.21066 5.21999 5.29355 5.29730 5.46237 5.49920 5.56476 5.86936 6.20380 6.61028 6.81890 7.25712 7.56582 8.21477 9.02366 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018712 B = 0.005474 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.984240 B = 5114.079164 C = 6380.291659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.025 4.025 3 Si 0.946 3.054 4 H -0.291 1.291 5 H -0.315 1.315 6 H -0.254 1.254 7 C -0.239 4.239 8 H 0.078 0.922 9 N -0.618 5.618 10 C 0.104 3.896 11 C -0.125 4.125 12 C -0.110 4.110 13 C 0.140 3.860 14 H 0.053 0.947 15 C 0.120 3.880 16 N -0.706 5.706 17 C 0.534 3.466 18 O -0.593 6.593 19 C -0.171 4.171 20 H 0.131 0.869 21 C -0.143 4.143 22 H 0.087 0.913 23 C -0.095 4.095 24 C -0.113 4.113 25 C -0.090 4.090 26 C -0.122 4.122 27 H 0.106 0.894 28 H 0.260 0.740 29 H 0.022 0.978 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.411 0.589 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.168 -9.360 4.174 11.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.221 4.221 3 Si 0.778 3.222 4 H -0.219 1.219 5 H -0.244 1.244 6 H -0.179 1.179 7 C -0.368 4.368 8 H 0.095 0.905 9 N -0.345 5.345 10 C -0.020 4.020 11 C -0.163 4.163 12 C -0.149 4.149 13 C 0.034 3.966 14 H 0.070 0.930 15 C -0.005 4.005 16 N -0.357 5.357 17 C 0.322 3.678 18 O -0.476 6.476 19 C -0.192 4.192 20 H 0.149 0.851 21 C -0.162 4.162 22 H 0.105 0.895 23 C -0.133 4.133 24 C -0.150 4.150 25 C -0.127 4.127 26 C -0.141 4.141 27 H 0.124 0.876 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.250 0.750 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.334 -9.813 3.704 11.349 hybrid contribution -0.221 1.644 -0.232 1.675 sum 4.113 -8.169 3.472 9.783 Atomic orbital electron populations 1.69936 1.07146 1.27023 1.55014 1.25933 0.95717 1.00790 0.99701 0.85786 0.79348 0.80636 0.76450 1.21882 1.24416 1.17862 1.18791 0.84484 0.93517 1.39972 0.90472 1.44901 1.05655 1.41975 1.41933 1.22079 0.94059 0.93413 0.92416 1.22746 0.94143 0.97428 1.01971 1.22520 0.95311 0.96046 1.00977 1.21486 0.89632 0.87998 0.97482 0.92956 1.21902 0.85135 0.97431 0.96049 1.46305 1.25485 1.15806 1.48109 1.20063 0.85492 0.81465 0.80808 1.90585 1.66434 1.49875 1.40671 1.22366 0.91616 1.03772 1.01418 0.85110 1.23208 0.91966 1.03173 0.97820 0.89492 1.22019 0.92816 0.98655 0.99770 1.22679 0.96911 0.93978 1.01469 1.22053 0.92317 1.01230 0.97097 1.23318 0.99992 0.88845 1.01936 0.87623 0.93090 0.96017 0.95544 0.91457 0.88289 0.90063 0.87911 0.94168 0.90821 0.74957 0.90971 0.91225 0.90577 0.89118 0.89141 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.18 13.97 21.65 0.30 -56.88 16 2 C -0.03 -1.42 5.45 84.86 0.46 -0.95 16 3 Si 0.95 45.80 24.74 68.60 1.70 47.50 16 4 H -0.29 -13.95 6.88 99.48 0.68 -13.27 16 5 H -0.31 -15.59 7.11 99.48 0.71 -14.88 16 6 H -0.25 -11.47 6.98 99.48 0.69 -10.77 16 7 C -0.24 -12.63 9.55 84.03 0.80 -11.83 16 8 H 0.08 4.27 5.29 -2.91 -0.02 4.25 16 9 N -0.62 -27.56 2.72 -667.99 -1.82 -29.38 16 10 C 0.10 4.23 6.19 86.84 0.54 4.77 16 11 C -0.12 -3.67 7.08 31.99 0.23 -3.44 16 12 C -0.11 -2.94 6.48 31.78 0.21 -2.74 16 13 C 0.14 4.94 3.33 45.34 0.15 5.10 16 14 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 15 C 0.12 4.36 5.16 86.38 0.45 4.81 16 16 N -0.71 -27.32 4.46 -463.06 -2.06 -29.38 16 17 C 0.53 21.02 7.61 87.66 0.67 21.68 16 18 O -0.59 -26.44 16.32 -3.03 -0.05 -26.49 16 19 C -0.17 -5.60 5.74 -11.54 -0.07 -5.67 16 20 H 0.13 3.84 8.14 -2.39 -0.02 3.82 16 21 C -0.14 -4.55 6.64 -10.09 -0.07 -4.61 16 22 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 23 C -0.10 -2.45 6.62 31.66 0.21 -2.24 16 24 C -0.11 -2.15 6.91 31.88 0.22 -1.93 16 25 C -0.09 -1.79 6.63 31.68 0.21 -1.58 16 26 C -0.12 -3.44 6.39 -10.08 -0.06 -3.50 16 27 H 0.11 3.24 7.78 -2.39 -0.02 3.22 16 28 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 29 H 0.02 0.97 3.01 -2.39 -0.01 0.96 16 30 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.08 2.01 7.85 -2.39 -0.02 1.99 16 34 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.41 16.39 5.99 -92.71 -0.56 15.84 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -68.15 333.32 2.42 -65.73 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.41 Total: 31.05 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 3.94 Total: -2.15 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -3.58 Total: -115.64 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.05 Total: -26.49 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.70 Total: 47.50 kcal Total: -68.15 2.42 -65.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027807246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.042 kcal (2) G-P(sol) polarization free energy of solvation -68.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds