Wall clock time and date at job start Tue Mar 31 2020 00:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00187 * 2 1 4 4 H 1.48492 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46986 * 300.00379 * 3 2 1 6 6 H 1.48502 * 109.46863 * 60.00184 * 3 2 1 7 7 C 1.38823 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99833 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99707 * 359.97438 * 7 2 1 10 10 C 1.47418 * 125.65007 * 14.77349 * 9 7 2 11 11 C 1.54907 * 104.83110 * 155.90574 * 10 9 7 12 12 C 1.55162 * 101.58325 * 37.00761 * 11 10 9 13 13 C 1.47021 * 125.64274 * 194.81387 * 9 7 2 14 14 H 1.09001 * 109.87934 * 300.59728 * 13 9 7 15 15 C 1.52994 * 109.88468 * 61.60821 * 13 9 7 16 16 N 1.46497 * 109.47325 * 184.49338 * 15 13 9 17 17 C 1.34778 * 120.00318 * 185.11306 * 16 15 13 18 18 O 1.21285 * 119.99701 * 359.71861 * 17 16 15 19 19 C 1.50698 * 120.00251 * 179.72277 * 17 16 15 20 20 C 1.52995 * 119.29944 * 250.23067 * 19 17 16 21 21 C 1.53002 * 60.38271 * 248.69227 * 20 19 17 22 22 H 1.08999 * 119.29906 * 111.29929 * 21 20 19 23 23 C 1.54270 * 118.19865 * 266.38701 * 21 20 19 24 24 C 1.54889 * 104.19727 * 87.78102 * 23 21 20 25 25 C 1.54269 * 117.41242 * 44.57292 * 19 17 16 26 26 H 0.96993 * 119.99895 * 359.97438 * 1 2 3 27 27 H 1.09001 * 110.36768 * 274.74165 * 10 9 7 28 28 H 1.08997 * 110.36988 * 36.95962 * 10 9 7 29 29 H 1.09000 * 111.00603 * 155.08086 * 11 10 9 30 30 H 1.08996 * 111.00500 * 278.89609 * 11 10 9 31 31 H 1.08995 * 110.72007 * 206.13440 * 12 11 10 32 32 H 1.09004 * 110.71807 * 82.86047 * 12 11 10 33 33 H 1.08996 * 109.47434 * 64.49174 * 15 13 9 34 34 H 1.09007 * 109.47332 * 304.49291 * 15 13 9 35 35 H 0.97004 * 120.00231 * 4.83845 * 16 15 13 36 36 H 1.08999 * 117.46197 * 356.28998 * 20 19 17 37 37 H 1.09001 * 117.46500 * 141.09776 * 20 19 17 38 38 H 1.09000 * 110.48309 * 206.46112 * 23 21 20 39 39 H 1.08996 * 110.48332 * 329.10678 * 23 21 20 40 40 H 1.09004 * 110.75572 * 80.37324 * 24 23 21 41 41 H 1.08999 * 110.75821 * 203.55367 * 24 23 21 42 42 H 1.09002 * 110.48504 * 235.04544 * 25 19 17 43 43 H 1.08999 * 110.48371 * 357.69097 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2023 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1073 -2.5529 -0.3055 11 6 -0.2462 -4.0223 -0.7759 12 6 0.7640 -4.7441 0.1548 13 6 1.8975 -3.7077 0.3044 14 1 2.7034 -3.9328 -0.3942 15 6 2.4320 -3.7245 1.7379 16 7 3.0948 -5.0050 1.9970 17 6 3.5544 -5.2883 3.2319 18 8 3.4238 -4.4810 4.1275 19 6 4.2306 -6.6081 3.4999 20 6 3.5181 -7.6534 4.3604 21 6 4.7726 -6.9606 4.8963 22 1 4.6827 -6.2655 5.7311 23 6 6.1354 -7.6502 4.6790 24 6 6.6024 -7.1403 3.2930 25 6 5.2671 -7.0977 2.4674 26 1 -0.4849 0.8400 0.0004 27 1 -0.7074 -2.3824 0.5883 28 1 -0.4074 -1.8688 -1.0992 29 1 -1.2591 -4.3905 -0.6133 30 1 0.0421 -4.1266 -1.8218 31 1 1.1347 -5.6565 -0.3123 32 1 0.3101 -4.9615 1.1217 33 1 1.6047 -3.5959 2.4357 34 1 3.1472 -2.9123 1.8686 35 1 3.1994 -5.6508 1.2807 36 1 2.5618 -7.3735 4.8022 37 1 3.6095 -8.6976 4.0615 38 1 6.8419 -7.3513 5.4534 39 1 6.0169 -8.7336 4.6668 40 1 7.0392 -6.1450 3.3746 41 1 7.3114 -7.8360 2.8443 42 1 5.0095 -8.0954 2.1119 43 1 5.3334 -6.3996 1.6330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028035478.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:15 Heat of formation + Delta-G solvation = 2.862364 kcal Electronic energy + Delta-G solvation = -22079.859778 eV Core-core repulsion = 18932.772741 eV Total energy + Delta-G solvation = -3147.087037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.43443 -38.32054 -37.33187 -34.21420 -32.47839 -31.71128 -29.84221 -29.11528 -28.05643 -25.02633 -24.18811 -22.92550 -21.89888 -20.49159 -20.22240 -19.72160 -18.84633 -17.25476 -16.59360 -15.81261 -15.41712 -14.93296 -14.65948 -14.55032 -13.92355 -13.81773 -13.45787 -13.26161 -13.10844 -12.89356 -12.09490 -11.95272 -11.85731 -11.72079 -11.38620 -11.28293 -11.24314 -11.14652 -10.93646 -10.80455 -10.49741 -10.23115 -10.08715 -9.94735 -9.83773 -9.81959 -9.72076 -9.41504 -8.64523 -8.55164 -6.83802 -5.77205 -3.13772 2.73905 3.37389 3.41827 3.46397 3.48100 3.59837 4.26079 4.46117 4.48538 4.60369 4.90573 5.03852 5.15819 5.23695 5.32643 5.34007 5.41197 5.47603 5.50682 5.55386 5.62676 5.63445 5.74213 5.81408 5.84267 5.89141 6.02823 6.07295 6.14882 6.18775 6.25161 6.46010 6.55613 6.63995 6.73634 6.83512 7.07506 7.51334 7.61186 7.79075 7.86164 8.25425 8.56016 9.17290 9.77800 10.45268 11.34967 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022225 B = 0.004189 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.556763 B = 6681.929686 C = 7372.355984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.125 4.125 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.109 3.891 16 N -0.718 5.718 17 C 0.548 3.452 18 O -0.544 6.544 19 C -0.177 4.177 20 C -0.125 4.125 21 C -0.130 4.130 22 H 0.119 0.881 23 C -0.096 4.096 24 C -0.122 4.122 25 C -0.087 4.087 26 H 0.253 0.747 27 H 0.026 0.974 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.395 0.605 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.073 -18.179 3.820 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.362 4.362 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.163 4.163 13 C 0.044 3.956 14 H 0.054 0.946 15 C -0.016 4.016 16 N -0.368 5.368 17 C 0.334 3.666 18 O -0.422 6.422 19 C -0.181 4.181 20 C -0.162 4.162 21 C -0.149 4.149 22 H 0.137 0.863 23 C -0.133 4.133 24 C -0.160 4.160 25 C -0.124 4.124 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.229 0.771 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.907 -17.290 4.421 19.519 hybrid contribution 0.383 0.742 -0.237 0.868 sum 8.290 -16.548 4.184 18.975 Atomic orbital electron populations 1.69946 1.05031 1.25207 1.55926 1.24920 0.95674 0.97868 1.01360 0.86077 0.78942 0.83683 0.77265 1.20374 1.21689 1.21580 1.19034 0.90424 0.82181 1.44573 0.90616 1.44498 1.06462 1.01053 1.79335 1.21452 0.84809 0.90164 0.98849 1.23004 0.97564 0.99617 0.98532 1.22599 0.97094 0.96950 0.99687 1.21124 0.94509 0.88088 0.91899 0.94552 1.22238 0.96815 0.83331 0.99230 1.46058 1.59409 1.20540 1.10784 1.19308 0.78111 0.86478 0.82730 1.90700 1.57582 1.49271 1.44621 1.22424 1.03556 0.96382 0.95708 1.23089 0.96562 0.96439 1.00099 1.23346 0.93219 1.02342 0.95951 0.86346 1.21972 0.94426 0.99570 0.97337 1.23036 0.96741 1.01594 0.94627 1.22316 0.92640 1.01224 0.96242 0.93645 0.95622 0.90960 0.92352 0.92302 0.92407 0.91864 0.91758 0.91535 0.77111 0.88012 0.88180 0.90949 0.91173 0.91095 0.91143 0.90710 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 10.58 55.49 0.59 -26.20 16 2 C 0.00 -0.03 5.47 -17.43 -0.10 -0.12 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.23 -6.45 9.72 -15.05 -0.15 -6.60 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.59 -14.74 3.13 -162.58 -0.51 -15.25 16 10 C 0.17 4.13 5.41 -2.53 -0.01 4.11 16 11 C -0.15 -2.73 7.08 -24.58 -0.17 -2.91 16 12 C -0.13 -2.11 6.20 -24.89 -0.15 -2.26 16 13 C 0.15 3.03 3.19 -66.96 -0.21 2.82 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 15 C 0.11 2.16 5.10 -4.05 -0.02 2.14 16 16 N -0.72 -11.24 5.18 -60.30 -0.31 -11.55 16 17 C 0.55 9.05 7.42 -10.99 -0.08 8.97 16 18 O -0.54 -11.46 16.78 5.55 0.09 -11.37 16 19 C -0.18 -2.13 2.63 -154.54 -0.41 -2.54 16 20 C -0.12 -1.26 9.85 -26.73 -0.26 -1.52 16 21 C -0.13 -1.43 6.55 -89.49 -0.59 -2.01 16 22 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 23 C -0.10 -0.81 6.63 -25.07 -0.17 -0.97 16 24 C -0.12 -1.06 6.96 -23.54 -0.16 -1.22 16 25 C -0.09 -0.81 6.34 -23.87 -0.15 -0.97 16 26 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 28 H 0.07 1.92 6.94 -51.93 -0.36 1.56 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.07 7.78 -51.93 -0.40 0.66 16 33 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 34 H 0.07 1.50 7.86 -51.93 -0.41 1.10 16 35 H 0.40 4.99 7.86 -40.82 -0.32 4.67 16 36 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.74 7.56 -51.93 -0.39 0.35 16 LS Contribution 343.02 15.07 5.17 5.17 Total: -1.00 -32.06 343.02 -9.97 -42.04 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.34 Total: 3.01 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.64 Total: -3.08 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.23 Total: -53.00 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.06 -9.97 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028035478.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.899 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds