Wall clock time and date at job start Tue Mar 31 2020 00:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00187 * 2 1 4 4 H 1.48492 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46986 * 300.00379 * 3 2 1 6 6 H 1.48502 * 109.46863 * 60.00184 * 3 2 1 7 7 C 1.38823 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99833 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99707 * 359.97438 * 7 2 1 10 10 C 1.47418 * 125.65007 * 14.77349 * 9 7 2 11 11 C 1.54907 * 104.83110 * 155.90574 * 10 9 7 12 12 C 1.55162 * 101.58325 * 37.00761 * 11 10 9 13 13 C 1.47021 * 125.64274 * 194.81387 * 9 7 2 14 14 H 1.09001 * 109.87934 * 300.59728 * 13 9 7 15 15 C 1.52994 * 109.88468 * 61.60821 * 13 9 7 16 16 N 1.46497 * 109.47325 * 184.49338 * 15 13 9 17 17 C 1.34778 * 120.00318 * 185.11306 * 16 15 13 18 18 O 1.21285 * 119.99701 * 359.71861 * 17 16 15 19 19 C 1.50698 * 120.00251 * 179.72277 * 17 16 15 20 20 C 1.52995 * 119.29944 * 250.23067 * 19 17 16 21 21 C 1.53002 * 60.38271 * 248.69227 * 20 19 17 22 22 H 1.08999 * 119.29906 * 111.29929 * 21 20 19 23 23 C 1.54270 * 118.19865 * 266.38701 * 21 20 19 24 24 C 1.54889 * 104.19727 * 87.78102 * 23 21 20 25 25 C 1.54269 * 117.41242 * 44.57292 * 19 17 16 26 26 H 0.96993 * 119.99895 * 359.97438 * 1 2 3 27 27 H 1.09001 * 110.36768 * 274.74165 * 10 9 7 28 28 H 1.08997 * 110.36988 * 36.95962 * 10 9 7 29 29 H 1.09000 * 111.00603 * 155.08086 * 11 10 9 30 30 H 1.08996 * 111.00500 * 278.89609 * 11 10 9 31 31 H 1.08995 * 110.72007 * 206.13440 * 12 11 10 32 32 H 1.09004 * 110.71807 * 82.86047 * 12 11 10 33 33 H 1.08996 * 109.47434 * 64.49174 * 15 13 9 34 34 H 1.09007 * 109.47332 * 304.49291 * 15 13 9 35 35 H 0.97004 * 120.00231 * 4.83845 * 16 15 13 36 36 H 1.08999 * 117.46197 * 356.28998 * 20 19 17 37 37 H 1.09001 * 117.46500 * 141.09776 * 20 19 17 38 38 H 1.09000 * 110.48309 * 206.46112 * 23 21 20 39 39 H 1.08996 * 110.48332 * 329.10678 * 23 21 20 40 40 H 1.09004 * 110.75572 * 80.37324 * 24 23 21 41 41 H 1.08999 * 110.75821 * 203.55367 * 24 23 21 42 42 H 1.09002 * 110.48504 * 235.04544 * 25 19 17 43 43 H 1.08999 * 110.48371 * 357.69097 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2023 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1073 -2.5529 -0.3055 11 6 -0.2462 -4.0223 -0.7759 12 6 0.7640 -4.7441 0.1548 13 6 1.8975 -3.7077 0.3044 14 1 2.7034 -3.9328 -0.3942 15 6 2.4320 -3.7245 1.7379 16 7 3.0948 -5.0050 1.9970 17 6 3.5544 -5.2883 3.2319 18 8 3.4238 -4.4810 4.1275 19 6 4.2306 -6.6081 3.4999 20 6 3.5181 -7.6534 4.3604 21 6 4.7726 -6.9606 4.8963 22 1 4.6827 -6.2655 5.7311 23 6 6.1354 -7.6502 4.6790 24 6 6.6024 -7.1403 3.2930 25 6 5.2671 -7.0977 2.4674 26 1 -0.4849 0.8400 0.0004 27 1 -0.7074 -2.3824 0.5883 28 1 -0.4074 -1.8688 -1.0992 29 1 -1.2591 -4.3905 -0.6133 30 1 0.0421 -4.1266 -1.8218 31 1 1.1347 -5.6565 -0.3123 32 1 0.3101 -4.9615 1.1217 33 1 1.6047 -3.5959 2.4357 34 1 3.1472 -2.9123 1.8686 35 1 3.1994 -5.6508 1.2807 36 1 2.5618 -7.3735 4.8022 37 1 3.6095 -8.6976 4.0615 38 1 6.8419 -7.3513 5.4534 39 1 6.0169 -8.7336 4.6668 40 1 7.0392 -6.1450 3.3746 41 1 7.3114 -7.8360 2.8443 42 1 5.0095 -8.0954 2.1119 43 1 5.3334 -6.3996 1.6330 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028035478.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:14 Heat of formation + Delta-G solvation = -17.399437 kcal Electronic energy + Delta-G solvation = -22080.738395 eV Core-core repulsion = 18932.772741 eV Total energy + Delta-G solvation = -3147.965654 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52285 -39.72183 -38.79912 -35.79838 -34.43227 -32.45503 -31.52054 -30.70912 -29.10471 -26.78848 -25.88306 -23.94664 -22.95385 -22.00885 -21.29632 -21.24108 -20.17023 -18.76294 -18.07334 -17.38568 -16.70996 -16.46909 -16.20593 -15.77023 -15.58606 -15.23662 -14.61882 -14.34662 -14.04674 -14.00126 -13.86966 -13.69300 -13.43668 -13.03339 -12.88887 -12.81007 -12.71103 -12.04835 -12.01405 -11.98352 -11.89137 -11.84717 -11.75469 -11.51500 -11.42664 -11.34106 -10.73881 -10.70181 -10.65802 -10.10409 -8.88718 -7.91701 -5.29408 1.41360 1.43613 1.49875 1.52931 2.11632 2.47205 2.64858 3.28200 3.48972 3.63358 3.65627 3.81092 3.90829 3.96147 3.98735 4.23684 4.25995 4.42051 4.43067 4.49458 4.52714 4.64744 4.69719 4.76121 4.81992 4.92370 4.96961 4.99990 5.05006 5.12165 5.17956 5.19446 5.20724 5.30433 5.34818 5.44157 5.48281 5.55081 5.64144 5.75713 6.20369 6.58195 7.06307 7.26245 7.73170 8.39092 9.19525 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022225 B = 0.004189 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.556763 B = 6681.929686 C = 7372.355984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.971 3.029 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.295 1.295 7 C -0.241 4.241 8 H 0.076 0.924 9 N -0.612 5.612 10 C 0.173 3.827 11 C -0.132 4.132 12 C -0.112 4.112 13 C 0.149 3.851 14 H 0.053 0.947 15 C 0.129 3.871 16 N -0.701 5.701 17 C 0.542 3.458 18 O -0.600 6.600 19 C -0.189 4.189 20 C -0.105 4.105 21 C -0.139 4.139 22 H 0.091 0.909 23 C -0.088 4.088 24 C -0.123 4.123 25 C -0.081 4.081 26 H 0.248 0.752 27 H -0.010 1.010 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.029 0.971 35 H 0.416 0.584 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.050 0.950 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.577 -21.878 2.845 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.222 1.222 7 C -0.370 4.370 8 H 0.093 0.907 9 N -0.336 5.336 10 C 0.048 3.952 11 C -0.171 4.171 12 C -0.149 4.149 13 C 0.042 3.958 14 H 0.071 0.929 15 C 0.003 3.997 16 N -0.352 5.352 17 C 0.330 3.670 18 O -0.482 6.482 19 C -0.193 4.193 20 C -0.142 4.142 21 C -0.158 4.158 22 H 0.109 0.891 23 C -0.125 4.125 24 C -0.160 4.160 25 C -0.118 4.118 26 H 0.057 0.943 27 H 0.008 0.992 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.253 0.747 36 H 0.107 0.893 37 H 0.155 0.845 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.069 0.931 41 H 0.115 0.885 42 H 0.124 0.876 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.441 -21.054 3.416 23.325 hybrid contribution -0.071 1.890 0.127 1.896 sum 9.370 -19.163 3.544 21.624 Atomic orbital electron populations 1.70144 1.06302 1.25369 1.57485 1.25690 0.96517 1.00999 1.02034 0.85120 0.78301 0.79811 0.76800 1.19195 1.21268 1.22245 1.19336 0.90726 0.83650 1.43319 0.90651 1.44774 1.06954 1.02188 1.79692 1.21276 0.84034 0.93618 0.96281 1.22870 0.99655 0.95139 0.99415 1.22588 0.95128 0.97418 0.99787 1.21337 0.96145 0.86814 0.91514 0.92918 1.21685 0.94979 0.84402 0.98679 1.45779 1.58604 1.19273 1.11556 1.20222 0.77203 0.87746 0.81853 1.90674 1.59695 1.51543 1.46274 1.22442 1.04816 0.94482 0.97514 1.23213 0.95428 0.97550 0.98001 1.23480 0.95466 1.02469 0.94417 0.89089 1.21994 0.92491 1.00736 0.97292 1.23059 0.96884 1.01265 0.94820 1.22391 0.91734 1.02541 0.95174 0.94269 0.99226 0.94460 0.89872 0.90884 0.87521 0.91953 0.94914 0.95230 0.74728 0.89335 0.84483 0.90712 0.88571 0.93113 0.88537 0.87605 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.82 10.58 21.66 0.23 -57.59 16 2 C -0.06 -3.40 5.47 84.86 0.46 -2.94 16 3 Si 0.97 47.10 29.55 68.60 2.03 49.13 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 7 C -0.24 -13.70 9.72 84.04 0.82 -12.88 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 9 N -0.61 -31.26 3.13 -668.29 -2.09 -33.35 16 10 C 0.17 8.52 5.41 86.86 0.47 8.99 16 11 C -0.13 -4.59 7.08 31.99 0.23 -4.36 16 12 C -0.11 -3.42 6.20 31.78 0.20 -3.22 16 13 C 0.15 5.82 3.19 45.34 0.14 5.97 16 14 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 15 C 0.13 5.25 5.10 86.38 0.44 5.69 16 16 N -0.70 -21.40 5.18 -463.07 -2.40 -23.80 16 17 C 0.54 17.91 7.42 87.66 0.65 18.56 16 18 O -0.60 -26.52 16.78 -3.05 -0.05 -26.57 16 19 C -0.19 -4.18 2.63 -52.20 -0.14 -4.32 16 20 C -0.10 -1.83 9.85 30.59 0.30 -1.52 16 21 C -0.14 -2.86 6.55 -10.06 -0.07 -2.93 16 22 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 23 C -0.09 -1.21 6.63 31.67 0.21 -1.00 16 24 C -0.12 -1.73 6.96 32.66 0.23 -1.50 16 25 C -0.08 -1.23 6.34 32.44 0.21 -1.02 16 26 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 27 H -0.01 -0.57 8.06 -2.39 -0.02 -0.59 16 28 H 0.04 2.06 6.94 -2.39 -0.02 2.05 16 29 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.06 1.95 7.78 -2.38 -0.02 1.94 16 33 H 0.03 1.52 8.03 -2.39 -0.02 1.51 16 34 H 0.03 1.40 7.86 -2.38 -0.02 1.38 16 35 H 0.42 9.32 7.86 -92.71 -0.73 8.59 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 37 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.07 1.15 7.56 -2.39 -0.02 1.13 16 Total: -1.00 -75.88 343.02 2.12 -73.75 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.25 Total: 14.91 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 4.15 Total: 3.51 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -4.26 Total: -114.74 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.05 Total: -26.57 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -75.88 2.12 -73.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028035478.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.355 kcal (2) G-P(sol) polarization free energy of solvation -75.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds