Wall clock time and date at job start Tue Mar 31 2020 00:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48493 * 109.47595 * 240.00385 * 3 2 1 5 5 H 1.48504 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46978 * 119.99966 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.09008 * 111.00345 * 277.42446 * 12 11 10 14 14 C 1.52999 * 111.03901 * 153.59308 * 12 11 10 15 15 N 1.46497 * 109.47303 * 181.33162 * 14 12 11 16 16 C 1.34777 * 119.99977 * 179.97438 * 15 14 12 17 17 O 1.21272 * 119.99973 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99685 * 180.02562 * 16 15 14 19 19 H 1.09007 * 109.63651 * 299.57121 * 18 16 15 20 20 C 1.53022 * 109.64813 * 59.99565 * 18 16 15 21 21 C 1.50064 * 110.14642 * 169.11865 * 20 18 16 22 22 C 1.29439 * 124.07880 * 342.86986 * 21 20 18 23 23 C 1.50070 * 124.07666 * 0.49720 * 22 21 20 24 24 C 1.53038 * 110.13468 * 342.82353 * 23 22 21 25 25 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 26 26 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 28 28 H 1.08999 * 109.87327 * 298.35673 * 10 9 7 29 29 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 30 30 H 1.08994 * 110.87038 * 96.25177 * 11 10 9 31 31 H 1.09005 * 109.46636 * 301.32761 * 14 12 11 32 32 H 1.08992 * 109.47502 * 61.32488 * 14 12 11 33 33 H 0.97000 * 120.00003 * 359.97438 * 15 14 12 34 34 H 1.08994 * 109.36079 * 289.32962 * 20 18 16 35 35 H 1.09002 * 109.35089 * 49.05138 * 20 18 16 36 36 H 1.08006 * 117.96259 * 162.89596 * 21 20 18 37 37 H 1.08004 * 117.96185 * 180.46511 * 22 21 20 38 38 H 1.08997 * 109.36010 * 103.04966 * 23 22 21 39 39 H 1.09001 * 109.35570 * 222.77437 * 23 22 21 40 40 H 1.08994 * 109.66535 * 289.78059 * 24 23 22 41 41 H 1.09001 * 109.63549 * 169.14045 * 24 23 22 42 42 H 1.09002 * 110.36696 * 85.26297 * 25 9 7 43 43 H 1.08995 * 110.36608 * 323.05133 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.8588 -4.5974 -1.7015 14 6 1.0421 -6.1027 -0.1463 15 7 2.2943 -6.6328 -0.6914 16 6 2.6702 -7.8962 -0.4104 17 8 1.9720 -8.5940 0.2940 18 6 3.9586 -8.4412 -0.9708 19 1 3.9216 -8.4218 -2.0600 20 6 5.1330 -7.5915 -0.4807 21 6 6.4321 -8.2680 -0.8071 22 6 6.5399 -9.5198 -1.1180 23 6 5.3795 -10.4673 -1.2060 24 6 4.1647 -9.8810 -0.4832 25 6 1.9335 -3.7312 -0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5607 -2.0564 -0.8839 28 1 -0.5575 -2.0898 0.9015 29 1 -1.2974 -4.2573 -0.6785 30 1 -0.6320 -4.4259 0.9776 31 1 1.0793 -6.1306 0.9428 32 1 0.2074 -6.7095 -0.4969 33 1 2.8529 -6.0744 -1.2546 34 1 5.1012 -6.6165 -0.9668 35 1 5.0578 -7.4596 0.5987 36 1 7.3334 -7.6734 -0.7805 37 1 7.5263 -9.9064 -1.3277 38 1 5.1300 -10.6368 -2.2535 39 1 5.6509 -11.4152 -0.7413 40 1 4.3421 -9.8817 0.5922 41 1 3.2801 -10.4754 -0.7120 42 1 2.1668 -4.0420 1.0178 43 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028401240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:20 Heat of formation + Delta-G solvation = -16.855263 kcal Electronic energy + Delta-G solvation = -21626.186182 eV Core-core repulsion = 18478.244125 eV Total energy + Delta-G solvation = -3147.942057 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.22730 -38.11218 -37.35977 -34.64296 -32.58714 -31.52461 -30.99072 -29.69031 -28.21162 -25.64627 -24.27587 -23.49804 -22.53972 -20.52571 -19.93417 -19.58597 -18.14986 -17.39919 -16.76498 -16.05843 -15.84348 -15.04842 -14.85301 -14.57820 -14.13317 -13.92089 -13.64843 -13.41656 -13.29811 -12.98142 -12.48428 -12.40621 -12.33193 -11.96274 -11.72615 -11.39169 -11.20081 -10.99071 -10.90995 -10.78611 -10.58732 -10.39278 -10.17187 -10.00215 -9.87634 -9.66255 -9.57096 -9.24313 -8.93199 -8.61071 -6.84213 -5.72097 -3.05657 2.04766 2.67947 3.26045 3.39581 3.43785 3.45217 4.39097 4.45135 4.48631 4.64766 4.96540 4.98949 5.07503 5.13622 5.21330 5.24499 5.30508 5.42112 5.44171 5.53791 5.61947 5.67074 5.70380 5.74922 5.89804 5.98159 6.05515 6.06966 6.09810 6.33871 6.39830 6.47124 6.49796 6.53184 6.68564 6.69529 6.90724 7.54279 7.58295 7.62121 7.81285 8.24875 8.28126 9.20763 9.81484 10.48047 11.39825 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024898 B = 0.003485 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.333180 B = 8032.204319 C = 9030.202840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.079 0.921 14 C 0.132 3.868 15 N -0.724 5.724 16 C 0.515 3.485 17 O -0.545 6.545 18 C -0.108 4.108 19 H 0.098 0.902 20 C -0.084 4.084 21 C -0.151 4.151 22 C -0.159 4.159 23 C -0.092 4.092 24 C -0.099 4.099 25 C 0.143 3.857 26 H 0.253 0.747 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.402 0.598 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.019 0.981 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.829 -18.057 -3.890 20.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.097 0.903 14 C 0.008 3.992 15 N -0.375 5.375 16 C 0.301 3.699 17 O -0.423 6.423 18 C -0.129 4.129 19 H 0.116 0.884 20 C -0.121 4.121 21 C -0.169 4.169 22 C -0.177 4.177 23 C -0.129 4.129 24 C -0.137 4.137 25 C 0.016 3.984 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.236 0.764 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.036 0.964 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.251 -18.295 -3.370 20.350 hybrid contribution 0.797 1.307 -0.300 1.560 sum 9.048 -16.988 -3.671 19.594 Atomic orbital electron populations 1.69951 1.04892 1.25165 1.56947 1.24806 0.95722 0.97680 1.02242 0.86197 0.78453 0.83206 0.77884 1.21172 1.21590 1.21175 1.19005 0.90368 0.82454 1.43997 0.90533 1.44531 1.01709 0.99835 1.87213 1.21189 0.84300 0.88177 1.01089 1.22852 0.95448 0.99372 0.99696 1.22616 0.98596 0.92088 1.00475 0.90275 1.21387 0.85248 0.93764 0.98771 1.46116 1.24799 1.13848 1.52716 1.20583 0.87116 0.81616 0.80582 1.90681 1.55223 1.58298 1.38074 1.21408 0.92440 0.97184 1.01869 0.88394 1.20443 0.91244 0.98337 1.02104 1.22010 0.98088 0.96063 1.00762 1.22076 0.99047 0.95176 1.01379 1.20503 0.93469 0.98025 1.00930 1.21420 0.97952 0.93618 1.00707 1.21549 0.93928 0.86177 0.96698 0.93690 0.93548 0.93902 0.92000 0.92214 0.91442 0.91778 0.76406 0.90161 0.90130 0.87548 0.87952 0.90812 0.90790 0.91111 0.90686 0.96372 0.94733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.08 10.34 55.49 0.57 -26.50 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 8 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.61 -15.34 3.40 -169.85 -0.58 -15.91 16 10 C 0.18 4.26 5.38 -2.92 -0.02 4.25 16 11 C -0.13 -2.45 6.42 -24.90 -0.16 -2.61 16 12 C -0.12 -1.94 3.10 -88.47 -0.27 -2.21 16 13 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 14 C 0.13 1.90 5.13 -4.04 -0.02 1.88 16 15 N -0.72 -9.08 5.31 -60.30 -0.32 -9.40 16 16 C 0.52 6.77 7.14 -10.98 -0.08 6.69 16 17 O -0.55 -9.19 15.90 5.56 0.09 -9.10 16 18 C -0.11 -1.07 2.58 -91.56 -0.24 -1.30 16 19 H 0.10 0.84 8.13 -51.93 -0.42 0.42 16 20 C -0.08 -0.77 5.27 -28.18 -0.15 -0.92 16 21 C -0.15 -1.27 9.80 -35.90 -0.35 -1.62 16 22 C -0.16 -1.26 9.80 -35.90 -0.35 -1.61 16 23 C -0.09 -0.71 6.12 -28.17 -0.17 -0.88 16 24 C -0.10 -0.97 4.70 -26.51 -0.12 -1.09 16 25 C 0.14 2.83 6.40 -2.53 -0.02 2.81 16 26 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.05 1.23 7.39 -51.93 -0.38 0.85 16 28 H 0.04 1.15 7.52 -51.93 -0.39 0.76 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 1.03 8.04 -51.93 -0.42 0.62 16 31 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.40 4.33 8.01 -40.82 -0.33 4.01 16 34 H 0.08 0.66 7.89 -51.93 -0.41 0.25 16 35 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.11 0.79 8.06 -52.48 -0.42 0.37 16 37 H 0.10 0.69 8.06 -52.48 -0.42 0.26 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.77 8.12 -51.93 -0.42 0.34 16 41 H 0.07 0.78 7.89 -51.93 -0.41 0.37 16 42 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 341.73 15.07 5.15 5.15 Total: -1.00 -31.91 341.73 -9.68 -41.59 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.37 Total: 0.69 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -2.20 Total: -3.48 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.33 Total: -51.82 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.91 -9.68 -41.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028401240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.738 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds