Wall clock time and date at job start Tue Mar 31 2020 00:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48493 * 109.47595 * 240.00385 * 3 2 1 5 5 H 1.48504 * 109.46820 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46978 * 119.99966 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.09008 * 111.00345 * 277.42446 * 12 11 10 14 14 C 1.52999 * 111.03901 * 153.59308 * 12 11 10 15 15 N 1.46497 * 109.47303 * 181.33162 * 14 12 11 16 16 C 1.34777 * 119.99977 * 179.97438 * 15 14 12 17 17 O 1.21272 * 119.99973 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99685 * 180.02562 * 16 15 14 19 19 H 1.09007 * 109.63651 * 299.57121 * 18 16 15 20 20 C 1.53022 * 109.64813 * 59.99565 * 18 16 15 21 21 C 1.50064 * 110.14642 * 169.11865 * 20 18 16 22 22 C 1.29439 * 124.07880 * 342.86986 * 21 20 18 23 23 C 1.50070 * 124.07666 * 0.49720 * 22 21 20 24 24 C 1.53038 * 110.13468 * 342.82353 * 23 22 21 25 25 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 26 26 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 28 28 H 1.08999 * 109.87327 * 298.35673 * 10 9 7 29 29 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 30 30 H 1.08994 * 110.87038 * 96.25177 * 11 10 9 31 31 H 1.09005 * 109.46636 * 301.32761 * 14 12 11 32 32 H 1.08992 * 109.47502 * 61.32488 * 14 12 11 33 33 H 0.97000 * 120.00003 * 359.97438 * 15 14 12 34 34 H 1.08994 * 109.36079 * 289.32962 * 20 18 16 35 35 H 1.09002 * 109.35089 * 49.05138 * 20 18 16 36 36 H 1.08006 * 117.96259 * 162.89596 * 21 20 18 37 37 H 1.08004 * 117.96185 * 180.46511 * 22 21 20 38 38 H 1.08997 * 109.36010 * 103.04966 * 23 22 21 39 39 H 1.09001 * 109.35570 * 222.77437 * 23 22 21 40 40 H 1.08994 * 109.66535 * 289.78059 * 24 23 22 41 41 H 1.09001 * 109.63549 * 169.14045 * 24 23 22 42 42 H 1.09002 * 110.36696 * 85.26297 * 25 9 7 43 43 H 1.08995 * 110.36608 * 323.05133 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.8588 -4.5974 -1.7015 14 6 1.0421 -6.1027 -0.1463 15 7 2.2943 -6.6328 -0.6914 16 6 2.6702 -7.8962 -0.4104 17 8 1.9720 -8.5940 0.2940 18 6 3.9586 -8.4412 -0.9708 19 1 3.9216 -8.4218 -2.0600 20 6 5.1330 -7.5915 -0.4807 21 6 6.4321 -8.2680 -0.8071 22 6 6.5399 -9.5198 -1.1180 23 6 5.3795 -10.4673 -1.2060 24 6 4.1647 -9.8810 -0.4832 25 6 1.9335 -3.7312 -0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5607 -2.0564 -0.8839 28 1 -0.5575 -2.0898 0.9015 29 1 -1.2974 -4.2573 -0.6785 30 1 -0.6320 -4.4259 0.9776 31 1 1.0793 -6.1306 0.9428 32 1 0.2074 -6.7095 -0.4969 33 1 2.8529 -6.0744 -1.2546 34 1 5.1012 -6.6165 -0.9668 35 1 5.0578 -7.4596 0.5987 36 1 7.3334 -7.6734 -0.7805 37 1 7.5263 -9.9064 -1.3277 38 1 5.1300 -10.6368 -2.2535 39 1 5.6509 -11.4152 -0.7413 40 1 4.3421 -9.8817 0.5922 41 1 3.2801 -10.4754 -0.7120 42 1 2.1668 -4.0420 1.0178 43 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028401240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:17 Heat of formation + Delta-G solvation = -36.256463 kcal Electronic energy + Delta-G solvation = -21627.027482 eV Core-core repulsion = 18478.244125 eV Total energy + Delta-G solvation = -3148.783356 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.22444 -39.43296 -38.46392 -36.02979 -34.32735 -32.46191 -31.74353 -31.33809 -29.77853 -27.32651 -25.63489 -24.47607 -23.47328 -22.04789 -21.43398 -20.87040 -18.89484 -18.82879 -18.18148 -17.25567 -16.87418 -16.60534 -16.13110 -15.92866 -15.54631 -15.00820 -14.64502 -14.64284 -14.21584 -14.01598 -13.90755 -13.78698 -13.47476 -13.17402 -13.10745 -12.96529 -12.76977 -12.59766 -12.06796 -11.99824 -11.89056 -11.82487 -11.69060 -11.53405 -11.45572 -11.27497 -10.70180 -10.66268 -10.05468 -9.85056 -8.89384 -7.84488 -5.19994 1.44362 1.46359 1.49686 1.55895 1.65082 2.23098 2.50319 3.33945 3.58541 3.61615 3.73830 3.82067 3.92436 4.03121 4.03287 4.25758 4.31258 4.43319 4.45240 4.50162 4.61918 4.65263 4.72022 4.75782 4.81176 4.92446 4.94460 5.05267 5.08181 5.08587 5.08708 5.28262 5.35547 5.38737 5.45862 5.49817 5.67438 5.77790 5.79662 6.08770 6.20279 6.57581 7.10401 7.26042 7.78408 8.43494 9.26191 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024898 B = 0.003485 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.333180 B = 8032.204319 C = 9030.202840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.274 1.274 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.085 0.915 9 N -0.630 5.630 10 C 0.183 3.817 11 C -0.123 4.123 12 C -0.095 4.095 13 H 0.090 0.910 14 C 0.144 3.856 15 N -0.717 5.717 16 C 0.515 3.485 17 O -0.585 6.585 18 C -0.100 4.100 19 H 0.119 0.881 20 C -0.082 4.082 21 C -0.163 4.163 22 C -0.158 4.158 23 C -0.089 4.089 24 C -0.099 4.099 25 C 0.139 3.861 26 H 0.246 0.754 27 H 0.013 0.987 28 H 0.003 0.997 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.412 0.588 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.016 0.984 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.607 -19.322 -5.059 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.200 1.200 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.102 0.898 9 N -0.356 5.356 10 C 0.058 3.942 11 C -0.162 4.162 12 C -0.115 4.115 13 H 0.108 0.892 14 C 0.019 3.981 15 N -0.368 5.368 16 C 0.302 3.698 17 O -0.465 6.465 18 C -0.122 4.122 19 H 0.136 0.864 20 C -0.120 4.120 21 C -0.181 4.181 22 C -0.175 4.175 23 C -0.126 4.126 24 C -0.137 4.137 25 C 0.014 3.986 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.021 0.979 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.249 0.751 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.034 0.966 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.071 -19.582 -4.555 22.486 hybrid contribution 0.259 1.658 0.096 1.681 sum 10.330 -17.924 -4.458 21.163 Atomic orbital electron populations 1.70184 1.06371 1.25316 1.58327 1.25676 0.96609 1.01131 1.02704 0.85145 0.77117 0.78735 0.78299 1.19960 1.22245 1.20426 1.19454 0.91079 0.83744 1.42952 0.89753 1.44865 1.02452 1.01249 1.87031 1.20958 0.83866 0.91784 0.97611 1.22718 0.97272 0.95000 1.01210 1.22419 0.95955 0.92410 1.00713 0.89176 1.21134 0.86493 0.92343 0.98096 1.46024 1.24298 1.13952 1.52536 1.21142 0.87670 0.81201 0.79744 1.90667 1.56660 1.59295 1.39916 1.21421 0.90817 0.97126 1.02788 0.86360 1.20427 0.91388 0.98844 1.01297 1.22067 0.97930 0.96509 1.01615 1.22266 0.99783 0.94962 1.00534 1.20516 0.92366 0.98283 1.01464 1.21401 0.98673 0.93645 1.00010 1.21728 0.95386 0.84375 0.97112 0.94465 0.96861 0.97893 0.89623 0.91223 0.92604 0.90923 0.75116 0.89151 0.91579 0.86587 0.86413 0.89503 0.89743 0.92781 0.91621 0.96591 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.72 10.34 21.65 0.22 -57.50 16 2 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 3 Si 0.98 45.56 29.55 68.60 2.03 47.59 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.24 -13.55 10.28 84.03 0.86 -12.69 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 9 N -0.63 -31.99 3.40 -691.29 -2.35 -34.34 16 10 C 0.18 9.01 5.38 86.68 0.47 9.48 16 11 C -0.12 -4.35 6.42 31.78 0.20 -4.15 16 12 C -0.10 -2.94 3.10 -9.40 -0.03 -2.97 16 13 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 14 C 0.14 3.84 5.13 86.38 0.44 4.28 16 15 N -0.72 -16.43 5.31 -463.08 -2.46 -18.89 16 16 C 0.51 12.75 7.14 87.66 0.63 13.37 16 17 O -0.59 -19.31 15.90 -3.00 -0.05 -19.36 16 18 C -0.10 -1.80 2.58 -11.40 -0.03 -1.83 16 19 H 0.12 1.67 8.13 -2.38 -0.02 1.65 16 20 C -0.08 -1.35 5.27 29.66 0.16 -1.19 16 21 C -0.16 -2.36 9.80 27.04 0.27 -2.10 16 22 C -0.16 -2.08 9.80 27.04 0.27 -1.81 16 23 C -0.09 -1.16 6.12 29.66 0.18 -0.98 16 24 C -0.10 -1.81 4.70 30.74 0.14 -1.66 16 25 C 0.14 5.33 6.40 86.86 0.56 5.88 16 26 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.01 0.72 7.39 -2.38 -0.02 0.71 16 28 H 0.00 0.16 7.52 -2.39 -0.02 0.14 16 29 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.07 2.33 8.04 -2.39 -0.02 2.31 16 31 H 0.06 1.66 8.10 -2.38 -0.02 1.64 16 32 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.41 7.74 8.01 -92.71 -0.74 7.00 16 34 H 0.09 1.27 7.89 -2.39 -0.02 1.25 16 35 H 0.07 1.27 8.10 -2.39 -0.02 1.25 16 36 H 0.12 1.45 8.06 -2.91 -0.02 1.42 16 37 H 0.12 1.21 8.06 -2.91 -0.02 1.18 16 38 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.05 1.15 8.12 -2.39 -0.02 1.13 16 41 H 0.07 1.31 7.89 -2.39 -0.02 1.29 16 42 H 0.02 0.64 8.00 -2.39 -0.02 0.62 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -70.47 341.73 2.20 -68.27 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.23 Total: 14.01 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 4.58 Total: 0.21 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -4.59 Total: -110.73 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.36 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -70.47 2.20 -68.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028401240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.010 kcal (2) G-P(sol) polarization free energy of solvation -70.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds