Wall clock time and date at job start Tue Mar 31 2020 00:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00420 * 2 1 4 4 H 1.48506 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48500 * 109.46841 * 29.99787 * 3 2 1 6 6 H 1.48500 * 109.47295 * 150.00008 * 3 2 1 7 7 C 1.38821 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99549 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.65242 * 359.97438 * 9 7 2 11 11 C 1.54904 * 104.83697 * 155.91240 * 10 9 7 12 12 C 1.55162 * 101.58052 * 37.00834 * 11 10 9 13 13 H 1.09004 * 110.71944 * 83.03541 * 12 11 10 14 14 C 1.52998 * 110.71941 * 206.13341 * 12 11 10 15 15 N 1.46504 * 109.46954 * 184.99894 * 14 12 11 16 16 C 1.34778 * 120.00113 * 180.02562 * 15 14 12 17 17 O 1.21281 * 119.99755 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00223 * 179.97438 * 16 15 14 19 19 H 1.09003 * 109.63694 * 60.41980 * 18 16 15 20 20 C 1.53022 * 109.64264 * 300.00132 * 18 16 15 21 21 C 1.50059 * 110.14950 * 190.66408 * 20 18 16 22 22 C 1.29452 * 124.07349 * 17.13248 * 21 20 18 23 23 C 1.50070 * 124.07339 * 359.78991 * 22 21 20 24 24 C 1.52871 * 110.23038 * 16.69650 * 23 22 21 25 25 C 1.47026 * 125.64596 * 180.02562 * 9 7 2 26 26 H 0.97002 * 119.99495 * 359.97438 * 1 2 3 27 27 H 1.09005 * 110.36595 * 37.07308 * 10 9 7 28 28 H 1.09007 * 110.45652 * 274.80136 * 10 9 7 29 29 H 1.08995 * 111.00655 * 278.93207 * 11 10 9 30 30 H 1.08997 * 111.04191 * 155.09353 * 11 10 9 31 31 H 1.09006 * 109.47138 * 65.00002 * 14 12 11 32 32 H 1.09000 * 109.47605 * 304.99843 * 14 12 11 33 33 H 0.97003 * 120.00000 * 359.97438 * 15 14 12 34 34 H 1.09001 * 109.35565 * 70.45645 * 20 18 16 35 35 H 1.09000 * 109.24562 * 310.80425 * 20 18 16 36 36 H 1.08000 * 117.96614 * 197.15062 * 21 20 18 37 37 H 1.08002 * 117.95997 * 179.50355 * 22 21 20 38 38 H 1.09000 * 109.35530 * 137.07589 * 23 22 21 39 39 H 1.08992 * 109.35582 * 256.66432 * 23 22 21 40 40 H 1.08996 * 109.69651 * 191.10179 * 24 23 22 41 41 H 1.08993 * 109.44648 * 70.56066 * 24 23 22 42 42 H 1.08995 * 109.88089 * 61.59741 * 25 9 7 43 43 H 1.08995 * 109.88276 * 300.43246 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 -0.1416 -2.5332 0.0028 11 6 -0.4023 -3.9328 -0.6075 12 6 0.7782 -4.7525 -0.0225 13 1 0.5452 -5.0997 0.9841 14 6 1.1221 -5.9323 -0.9339 15 7 2.1563 -6.7538 -0.2998 16 6 2.6194 -7.8547 -0.9244 17 8 2.1803 -8.1649 -2.0116 18 6 3.6835 -8.6995 -0.2725 19 1 3.3156 -9.0815 0.6798 20 6 4.9383 -7.8555 -0.0380 21 6 6.0847 -8.7352 0.3663 22 6 6.1113 -10.0177 0.1923 23 6 4.9974 -10.8045 -0.4340 24 6 4.0518 -9.8717 -1.1907 25 6 1.9317 -3.7275 0.0028 26 1 -0.4849 0.8401 0.0004 27 1 -0.5998 -1.7594 -0.6132 28 1 -0.5283 -2.4851 1.0208 29 1 -0.3535 -3.8998 -1.6959 30 1 -1.3593 -4.3334 -0.2734 31 1 1.4903 -5.5582 -1.8892 32 1 0.2297 -6.5357 -1.0996 33 1 2.5082 -6.5050 0.5692 34 1 4.7433 -7.1302 0.7519 35 1 5.1938 -7.3287 -0.9574 36 1 6.9408 -8.2695 0.8317 37 1 6.9918 -10.5542 0.5139 38 1 5.4161 -11.5359 -1.1253 39 1 4.4399 -11.3244 0.3450 40 1 3.1493 -10.4136 -1.4731 41 1 4.5511 -9.4951 -2.0834 42 1 2.5287 -3.8634 0.9045 43 1 2.5575 -3.8520 -0.8809 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028401241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:23 Heat of formation + Delta-G solvation = -15.497082 kcal Electronic energy + Delta-G solvation = -21613.328578 eV Core-core repulsion = 18465.445417 eV Total energy + Delta-G solvation = -3147.883162 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22813 -38.12641 -37.36891 -34.65487 -32.60483 -31.52711 -31.00644 -29.69466 -28.19187 -25.64935 -24.28261 -23.49449 -22.52859 -20.59378 -19.92744 -19.52164 -18.15418 -17.38241 -16.80905 -16.06572 -15.86368 -15.06932 -14.88105 -14.60379 -14.15157 -13.92283 -13.64990 -13.42340 -13.25720 -12.88670 -12.51439 -12.46050 -12.32163 -11.77873 -11.70227 -11.50248 -11.20048 -11.00452 -10.95929 -10.80630 -10.59104 -10.39906 -10.13751 -10.01845 -9.86885 -9.66634 -9.46204 -9.25027 -8.93177 -8.65792 -6.84281 -5.66289 -3.07999 2.03725 2.67964 3.25861 3.39390 3.44206 3.46197 4.38780 4.44241 4.48121 4.63650 4.95953 4.98185 5.07016 5.14714 5.20813 5.25884 5.29766 5.40060 5.43057 5.52392 5.61626 5.68757 5.70188 5.74622 5.88968 5.97775 6.07556 6.09465 6.12438 6.34462 6.39020 6.47179 6.55224 6.58513 6.68549 6.72639 6.90644 7.50483 7.57848 7.61831 7.84908 8.28204 8.35727 9.21313 9.82322 10.47197 11.37683 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026521 B = 0.003390 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.509109 B = 8257.311840 C = 9069.265365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.114 4.114 13 H 0.075 0.925 14 C 0.131 3.869 15 N -0.724 5.724 16 C 0.515 3.485 17 O -0.544 6.544 18 C -0.107 4.107 19 H 0.097 0.903 20 C -0.084 4.084 21 C -0.151 4.151 22 C -0.158 4.158 23 C -0.092 4.092 24 C -0.099 4.099 25 C 0.142 3.858 26 H 0.252 0.748 27 H 0.107 0.893 28 H 0.012 0.988 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.401 0.599 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.018 0.982 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.476 -19.315 1.854 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.008 3.992 15 N -0.375 5.375 16 C 0.301 3.699 17 O -0.422 6.422 18 C -0.129 4.129 19 H 0.116 0.884 20 C -0.121 4.121 21 C -0.169 4.169 22 C -0.176 4.176 23 C -0.129 4.129 24 C -0.137 4.137 25 C 0.016 3.984 26 H 0.063 0.937 27 H 0.124 0.876 28 H 0.030 0.970 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.235 0.765 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.035 0.965 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 7.115 -19.286 1.073 20.585 hybrid contribution 0.739 1.015 0.631 1.405 sum 7.854 -18.271 1.704 19.961 Atomic orbital electron populations 1.69798 1.04900 1.24773 1.57626 1.24794 0.95737 0.97740 1.02438 0.86071 0.78504 0.83311 0.77601 1.21567 1.21645 1.20749 1.19078 0.90493 0.82508 1.43078 0.90541 1.44506 1.01994 0.99743 1.86831 1.21926 0.84670 0.92513 0.98192 1.23006 0.95535 0.98607 1.00323 1.22446 0.98291 0.94039 0.98599 0.90624 1.21462 0.90174 0.91056 0.96507 1.46131 1.41637 1.26546 1.23223 1.20577 0.82711 0.81039 0.85596 1.90688 1.59612 1.70975 1.20896 1.21395 0.94340 0.96427 1.00709 0.88441 1.20441 0.92017 0.97248 1.02422 1.22008 0.98889 0.95179 1.00858 1.22080 0.99269 0.95624 1.00673 1.20469 0.95318 0.97760 0.99371 1.21383 0.99683 0.94965 0.97691 1.21326 0.93450 0.85951 0.97662 0.93722 0.87555 0.97031 0.91850 0.92147 0.91288 0.91730 0.76513 0.90208 0.90111 0.87552 0.87938 0.90747 0.90867 0.90662 0.91138 0.96450 0.95816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.09 55.49 0.56 -26.32 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.22 -6.23 10.27 -15.06 -0.15 -6.38 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.42 3.39 -170.07 -0.58 -15.99 16 10 C 0.15 3.66 5.89 -2.53 -0.01 3.64 16 11 C -0.14 -2.51 6.53 -24.58 -0.16 -2.67 16 12 C -0.11 -1.89 2.96 -88.78 -0.26 -2.15 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.13 1.94 5.02 -4.04 -0.02 1.92 16 15 N -0.72 -9.14 5.38 -60.29 -0.32 -9.47 16 16 C 0.51 6.83 7.14 -10.99 -0.08 6.75 16 17 O -0.54 -9.31 15.91 5.56 0.09 -9.23 16 18 C -0.11 -1.06 2.58 -91.56 -0.24 -1.30 16 19 H 0.10 0.83 8.13 -51.93 -0.42 0.40 16 20 C -0.08 -0.77 5.27 -28.18 -0.15 -0.91 16 21 C -0.15 -1.26 9.80 -35.91 -0.35 -1.62 16 22 C -0.16 -1.25 9.81 -35.90 -0.35 -1.60 16 23 C -0.09 -0.71 6.11 -28.25 -0.17 -0.88 16 24 C -0.10 -0.97 4.70 -26.60 -0.12 -1.10 16 25 C 0.14 2.87 6.75 -3.06 -0.02 2.85 16 26 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.11 2.90 5.87 -51.93 -0.31 2.59 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.40 4.24 8.13 -40.82 -0.33 3.91 16 34 H 0.08 0.65 7.88 -51.93 -0.41 0.24 16 35 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.11 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.79 7.90 -51.93 -0.41 0.38 16 41 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.49 7.68 -51.93 -0.40 0.09 16 LS Contribution 341.01 15.07 5.14 5.14 Total: -1.00 -31.80 341.01 -9.63 -41.43 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.30 Total: 1.28 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.19 Total: -3.88 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.34 Total: -51.78 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.80 -9.63 -41.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028401241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.935 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds