Wall clock time and date at job start Tue Mar 31 2020 00:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00420 * 2 1 4 4 H 1.48506 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48500 * 109.46841 * 29.99787 * 3 2 1 6 6 H 1.48500 * 109.47295 * 150.00008 * 3 2 1 7 7 C 1.38821 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99549 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.47423 * 125.65242 * 359.97438 * 9 7 2 11 11 C 1.54904 * 104.83697 * 155.91240 * 10 9 7 12 12 C 1.55162 * 101.58052 * 37.00834 * 11 10 9 13 13 H 1.09004 * 110.71944 * 83.03541 * 12 11 10 14 14 C 1.52998 * 110.71941 * 206.13341 * 12 11 10 15 15 N 1.46504 * 109.46954 * 184.99894 * 14 12 11 16 16 C 1.34778 * 120.00113 * 180.02562 * 15 14 12 17 17 O 1.21281 * 119.99755 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00223 * 179.97438 * 16 15 14 19 19 H 1.09003 * 109.63694 * 60.41980 * 18 16 15 20 20 C 1.53022 * 109.64264 * 300.00132 * 18 16 15 21 21 C 1.50059 * 110.14950 * 190.66408 * 20 18 16 22 22 C 1.29452 * 124.07349 * 17.13248 * 21 20 18 23 23 C 1.50070 * 124.07339 * 359.78991 * 22 21 20 24 24 C 1.52871 * 110.23038 * 16.69650 * 23 22 21 25 25 C 1.47026 * 125.64596 * 180.02562 * 9 7 2 26 26 H 0.97002 * 119.99495 * 359.97438 * 1 2 3 27 27 H 1.09005 * 110.36595 * 37.07308 * 10 9 7 28 28 H 1.09007 * 110.45652 * 274.80136 * 10 9 7 29 29 H 1.08995 * 111.00655 * 278.93207 * 11 10 9 30 30 H 1.08997 * 111.04191 * 155.09353 * 11 10 9 31 31 H 1.09006 * 109.47138 * 65.00002 * 14 12 11 32 32 H 1.09000 * 109.47605 * 304.99843 * 14 12 11 33 33 H 0.97003 * 120.00000 * 359.97438 * 15 14 12 34 34 H 1.09001 * 109.35565 * 70.45645 * 20 18 16 35 35 H 1.09000 * 109.24562 * 310.80425 * 20 18 16 36 36 H 1.08000 * 117.96614 * 197.15062 * 21 20 18 37 37 H 1.08002 * 117.95997 * 179.50355 * 22 21 20 38 38 H 1.09000 * 109.35530 * 137.07589 * 23 22 21 39 39 H 1.08992 * 109.35582 * 256.66432 * 23 22 21 40 40 H 1.08996 * 109.69651 * 191.10179 * 24 23 22 41 41 H 1.08993 * 109.44648 * 70.56066 * 24 23 22 42 42 H 1.08995 * 109.88089 * 61.59741 * 25 9 7 43 43 H 1.08995 * 109.88276 * 300.43246 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 -0.1416 -2.5332 0.0028 11 6 -0.4023 -3.9328 -0.6075 12 6 0.7782 -4.7525 -0.0225 13 1 0.5452 -5.0997 0.9841 14 6 1.1221 -5.9323 -0.9339 15 7 2.1563 -6.7538 -0.2998 16 6 2.6194 -7.8547 -0.9244 17 8 2.1803 -8.1649 -2.0116 18 6 3.6835 -8.6995 -0.2725 19 1 3.3156 -9.0815 0.6798 20 6 4.9383 -7.8555 -0.0380 21 6 6.0847 -8.7352 0.3663 22 6 6.1113 -10.0177 0.1923 23 6 4.9974 -10.8045 -0.4340 24 6 4.0518 -9.8717 -1.1907 25 6 1.9317 -3.7275 0.0028 26 1 -0.4849 0.8401 0.0004 27 1 -0.5998 -1.7594 -0.6132 28 1 -0.5283 -2.4851 1.0208 29 1 -0.3535 -3.8998 -1.6959 30 1 -1.3593 -4.3334 -0.2734 31 1 1.4903 -5.5582 -1.8892 32 1 0.2297 -6.5357 -1.0996 33 1 2.5082 -6.5050 0.5692 34 1 4.7433 -7.1302 0.7519 35 1 5.1938 -7.3287 -0.9574 36 1 6.9408 -8.2695 0.8317 37 1 6.9918 -10.5542 0.5139 38 1 5.4161 -11.5359 -1.1253 39 1 4.4399 -11.3244 0.3450 40 1 3.1493 -10.4136 -1.4731 41 1 4.5511 -9.4951 -2.0834 42 1 2.5287 -3.8634 0.9045 43 1 2.5575 -3.8520 -0.8809 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028401241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:22 Heat of formation + Delta-G solvation = -34.786366 kcal Electronic energy + Delta-G solvation = -21614.165025 eV Core-core repulsion = 18465.445417 eV Total energy + Delta-G solvation = -3148.719608 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.23665 -39.45427 -38.47821 -36.05888 -34.34346 -32.46788 -31.75920 -31.34601 -29.76660 -27.34257 -25.63651 -24.47376 -23.47151 -22.14329 -21.39893 -20.82923 -18.92148 -18.83704 -18.20962 -17.28154 -16.93555 -16.63694 -16.16121 -15.89756 -15.55938 -15.06913 -14.65316 -14.39263 -14.28399 -14.22111 -13.89151 -13.54275 -13.43834 -13.23535 -13.12233 -13.05560 -12.81640 -12.66472 -12.01954 -11.98697 -11.87161 -11.82690 -11.70991 -11.58147 -11.38595 -11.26986 -10.75021 -10.66534 -10.07534 -9.85534 -8.88054 -7.77654 -5.21793 1.43647 1.46423 1.48307 1.56846 1.63737 2.21904 2.49573 3.32017 3.57300 3.65125 3.73626 3.79612 3.90304 3.98737 4.06781 4.25435 4.30390 4.42921 4.45563 4.49412 4.63808 4.65595 4.70456 4.74662 4.81193 4.91623 4.93710 5.04401 5.07914 5.08247 5.12896 5.27616 5.34477 5.36417 5.45436 5.49796 5.66050 5.79136 5.82834 6.08102 6.31902 6.56708 7.11232 7.25298 7.79227 8.42664 9.24286 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026521 B = 0.003390 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.509109 B = 8257.311840 C = 9069.265365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.240 4.240 8 H 0.080 0.920 9 N -0.629 5.629 10 C 0.152 3.848 11 C -0.123 4.123 12 C -0.093 4.093 13 H 0.098 0.902 14 C 0.143 3.857 15 N -0.716 5.716 16 C 0.514 3.486 17 O -0.586 6.586 18 C -0.100 4.100 19 H 0.120 0.880 20 C -0.082 4.082 21 C -0.163 4.163 22 C -0.157 4.157 23 C -0.089 4.089 24 C -0.100 4.100 25 C 0.139 3.861 26 H 0.247 0.753 27 H 0.070 0.930 28 H -0.009 1.009 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.413 0.587 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.030 0.970 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.692 -20.953 2.973 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.369 4.369 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.162 4.162 12 C -0.112 4.112 13 H 0.116 0.884 14 C 0.019 3.981 15 N -0.367 5.367 16 C 0.302 3.698 17 O -0.467 6.467 18 C -0.121 4.121 19 H 0.138 0.862 20 C -0.120 4.120 21 C -0.181 4.181 22 C -0.175 4.175 23 C -0.126 4.126 24 C -0.138 4.138 25 C 0.014 3.986 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.009 0.991 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.250 0.750 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 8.360 -20.950 2.219 22.665 hybrid contribution 0.374 1.496 0.263 1.564 sum 8.734 -19.454 2.482 21.468 Atomic orbital electron populations 1.70058 1.06206 1.24999 1.58635 1.25640 0.96654 1.01004 1.02773 0.85057 0.77638 0.79061 0.77451 1.21374 1.21974 1.19402 1.19459 0.91012 0.83899 1.42506 0.90220 1.44832 1.02831 1.01030 1.86810 1.21720 0.84090 0.94835 0.96646 1.22850 0.97874 0.95573 0.99940 1.22285 0.95653 0.93306 0.99983 0.88409 1.21181 0.91039 0.90654 0.95239 1.46021 1.41040 1.26081 1.23604 1.21175 0.82714 0.80937 0.85014 1.90673 1.61122 1.72025 1.22832 1.21406 0.93542 0.95907 1.01209 0.86199 1.20428 0.91963 0.97491 1.02086 1.22062 0.98966 0.95386 1.01697 1.22270 0.99694 0.95625 0.99901 1.20480 0.94977 0.97441 0.99713 1.21366 0.99681 0.95314 0.97424 1.21500 0.94727 0.84629 0.97781 0.94350 0.91224 0.99095 0.92103 0.89230 0.93235 0.90872 0.75025 0.89058 0.91772 0.86533 0.86349 0.89723 0.89473 0.91612 0.92945 0.95212 0.96286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.80 10.09 21.65 0.22 -56.58 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 3 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.24 -13.49 10.27 84.04 0.86 -12.62 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.63 -32.25 3.39 -691.98 -2.35 -34.60 16 10 C 0.15 7.44 5.89 86.85 0.51 7.95 16 11 C -0.12 -4.43 6.53 31.99 0.21 -4.22 16 12 C -0.09 -2.88 2.96 -9.60 -0.03 -2.91 16 13 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 14 C 0.14 3.97 5.02 86.38 0.43 4.41 16 15 N -0.72 -16.61 5.38 -463.05 -2.49 -19.10 16 16 C 0.51 12.97 7.14 87.66 0.63 13.59 16 17 O -0.59 -19.85 15.91 -3.03 -0.05 -19.90 16 18 C -0.10 -1.79 2.58 -11.40 -0.03 -1.82 16 19 H 0.12 1.66 8.13 -2.39 -0.02 1.64 16 20 C -0.08 -1.35 5.27 29.65 0.16 -1.20 16 21 C -0.16 -2.35 9.80 27.03 0.26 -2.08 16 22 C -0.16 -2.05 9.81 27.03 0.27 -1.79 16 23 C -0.09 -1.16 6.11 29.61 0.18 -0.97 16 24 C -0.10 -1.84 4.70 30.68 0.14 -1.70 16 25 C 0.14 5.45 6.75 86.73 0.59 6.03 16 26 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.07 3.93 5.87 -2.38 -0.01 3.92 16 28 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 29 H 0.06 2.22 8.05 -2.39 -0.02 2.20 16 30 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.05 1.60 7.93 -2.38 -0.02 1.58 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.41 7.58 8.13 -92.71 -0.75 6.82 16 34 H 0.09 1.26 7.88 -2.39 -0.02 1.24 16 35 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 36 H 0.12 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.12 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 1.33 7.90 -2.39 -0.02 1.31 16 41 H 0.05 1.14 8.12 -2.39 -0.02 1.12 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.02 0.77 7.68 -2.39 -0.02 0.75 16 Total: -1.00 -70.13 341.01 2.23 -67.90 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.22 Total: 15.27 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 4.65 Total: -0.76 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -4.62 Total: -110.28 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.05 Total: -19.90 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.13 2.23 -67.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028401241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.116 kcal (2) G-P(sol) polarization free energy of solvation -70.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds