Wall clock time and date at job start Tue Mar 31 2020 00:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 120.00085 * 2 1 4 4 H 1.48499 * 109.47305 * 240.00466 * 3 2 1 5 5 H 1.48499 * 109.47276 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47092 * 120.00348 * 3 2 1 7 7 C 1.38809 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00201 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99919 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.65168 * 359.97162 * 9 7 2 11 11 C 1.54909 * 104.83561 * 155.91011 * 10 9 7 12 12 C 1.55160 * 101.58059 * 37.01012 * 11 10 9 13 13 H 1.08998 * 110.72479 * 83.03670 * 12 11 10 14 14 C 1.52997 * 110.72280 * 206.13749 * 12 11 10 15 15 N 1.46499 * 109.47555 * 185.00158 * 14 12 11 16 16 C 1.34777 * 120.00199 * 180.02562 * 15 14 12 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 15 14 19 19 H 1.09004 * 109.63769 * 299.72140 * 18 16 15 20 20 C 1.53023 * 109.64238 * 60.14083 * 18 16 15 21 21 C 1.50070 * 110.14376 * 169.12287 * 20 18 16 22 22 C 1.29446 * 124.07608 * 342.86430 * 21 20 18 23 23 C 1.50063 * 124.07513 * 0.45082 * 22 21 20 24 24 C 1.52945 * 110.30337 * 343.05279 * 23 22 21 25 25 C 1.47030 * 125.64525 * 180.02562 * 9 7 2 26 26 H 0.97004 * 119.99575 * 359.97438 * 1 2 3 27 27 H 1.09002 * 110.36469 * 37.07202 * 10 9 7 28 28 H 1.09006 * 110.36426 * 274.75110 * 10 9 7 29 29 H 1.08993 * 111.00521 * 278.94073 * 11 10 9 30 30 H 1.08996 * 111.03662 * 155.09441 * 11 10 9 31 31 H 1.08998 * 109.47382 * 64.99719 * 14 12 11 32 32 H 1.09002 * 109.47216 * 305.00156 * 14 12 11 33 33 H 0.97000 * 119.99484 * 359.97438 * 15 14 12 34 34 H 1.09006 * 109.35632 * 289.32744 * 20 18 16 35 35 H 1.08994 * 109.35715 * 48.91527 * 20 18 16 36 36 H 1.07996 * 117.96033 * 162.89584 * 21 20 18 37 37 H 1.07998 * 117.95489 * 180.47206 * 22 21 20 38 38 H 1.09000 * 109.35535 * 103.09553 * 23 22 21 39 39 H 1.09002 * 109.35759 * 222.81798 * 23 22 21 40 40 H 1.08996 * 109.44015 * 289.48058 * 24 23 22 41 41 H 1.08999 * 109.80431 * 168.88004 * 24 23 22 42 42 H 1.09003 * 109.87704 * 61.60459 * 25 9 7 43 43 H 1.08990 * 109.88462 * 300.43766 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1416 -2.5331 -0.0017 11 6 -0.4017 -3.9320 -0.6142 12 6 0.7783 -4.7524 -0.0294 13 1 0.5446 -5.1011 0.9765 14 6 1.1231 -5.9309 -0.9422 15 7 2.1566 -6.7534 -0.3085 16 6 2.6203 -7.8533 -0.9344 17 8 2.1814 -8.1625 -2.0220 18 6 3.6790 -8.7028 -0.2798 19 1 4.5751 -8.1056 -0.1107 20 6 3.1571 -9.2365 1.0560 21 6 4.0852 -10.2876 1.5907 22 6 4.9746 -10.9006 0.8775 23 6 5.2084 -10.6392 -0.5816 24 6 4.0166 -9.8943 -1.1849 25 6 1.9318 -3.7275 -0.0017 26 1 -0.4850 0.8401 0.0004 27 1 -0.5993 -1.7585 -0.6170 28 1 -0.5273 -2.4872 1.0168 29 1 -0.3520 -3.8974 -1.7024 30 1 -1.3591 -4.3329 -0.2813 31 1 1.4920 -5.5555 -1.8966 32 1 0.2307 -6.5341 -1.1095 33 1 2.5078 -6.5058 0.5611 34 1 3.0894 -8.4166 1.7711 35 1 2.1672 -9.6689 0.9103 36 1 4.0059 -10.5491 2.6356 37 1 5.5861 -11.6470 1.3626 38 1 6.1064 -10.0329 -0.7006 39 1 5.3413 -11.5877 -1.1019 40 1 3.1599 -10.5658 -1.2414 41 1 4.2715 -9.5360 -2.1823 42 1 2.5280 -3.8645 0.9004 43 1 2.5583 -3.8507 -0.8850 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028401242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:26 Heat of formation + Delta-G solvation = -15.411775 kcal Electronic energy + Delta-G solvation = -21548.430834 eV Core-core repulsion = 18400.551371 eV Total energy + Delta-G solvation = -3147.879463 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.23299 -38.13129 -37.36879 -34.65431 -32.60424 -31.54023 -31.02562 -29.69523 -28.18823 -25.65469 -24.29094 -23.50549 -22.53381 -20.59473 -19.92138 -19.52903 -18.17387 -17.38175 -16.80884 -16.09059 -15.75063 -15.37526 -14.70767 -14.41357 -14.32568 -13.94016 -13.66594 -13.48760 -13.19230 -12.93197 -12.51153 -12.47158 -12.32671 -11.77321 -11.70309 -11.49755 -11.21449 -11.01271 -10.95935 -10.79349 -10.60673 -10.40030 -10.15354 -10.02112 -9.87148 -9.66410 -9.46079 -9.27947 -8.93068 -8.65289 -6.84083 -5.65939 -3.07721 2.00840 2.68204 3.25732 3.40092 3.44184 3.45605 4.37212 4.41956 4.48414 4.62926 4.94957 4.96436 5.04520 5.14326 5.20217 5.25855 5.28902 5.39198 5.41013 5.52597 5.59752 5.65678 5.68308 5.73453 5.89096 5.97623 6.07645 6.08454 6.12445 6.34643 6.36468 6.47305 6.55483 6.58611 6.65538 6.72833 6.90835 7.50604 7.57937 7.61682 7.85087 8.28265 8.36036 9.21593 9.82580 10.47474 11.37984 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029827 B = 0.003163 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.512708 B = 8850.217806 C = 9219.662559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.114 4.114 13 H 0.075 0.925 14 C 0.131 3.869 15 N -0.724 5.724 16 C 0.515 3.485 17 O -0.544 6.544 18 C -0.109 4.109 19 H 0.099 0.901 20 C -0.082 4.082 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.093 4.093 24 C -0.099 4.099 25 C 0.142 3.858 26 H 0.253 0.747 27 H 0.107 0.893 28 H 0.012 0.988 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.401 0.599 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.018 0.982 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.449 -20.099 2.419 21.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.008 3.992 15 N -0.375 5.375 16 C 0.301 3.699 17 O -0.422 6.422 18 C -0.130 4.130 19 H 0.117 0.883 20 C -0.119 4.119 21 C -0.172 4.172 22 C -0.173 4.173 23 C -0.130 4.130 24 C -0.137 4.137 25 C 0.016 3.984 26 H 0.063 0.937 27 H 0.125 0.875 28 H 0.030 0.970 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.235 0.765 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.035 0.965 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.076 -20.068 1.632 21.031 hybrid contribution 0.695 0.963 0.682 1.369 sum 6.771 -19.104 2.314 20.401 Atomic orbital electron populations 1.69792 1.04895 1.24898 1.57552 1.24791 0.95738 0.97735 1.02410 0.86145 0.78402 0.83011 0.77892 1.21141 1.21547 1.21229 1.19034 0.90471 0.82527 1.43206 0.90595 1.44503 1.01995 0.99727 1.86856 1.21931 0.84664 0.92527 0.98158 1.23006 0.95534 0.98605 1.00327 1.22443 0.98278 0.94042 0.98588 0.90618 1.21460 0.90183 0.91049 0.96510 1.46130 1.41686 1.26618 1.23097 1.20577 0.82846 0.80945 0.85549 1.90689 1.59319 1.71171 1.20996 1.21410 0.98100 0.97083 0.96397 0.88300 1.20417 0.98827 0.97836 0.94839 1.21988 0.97522 0.98079 0.99611 1.22088 0.99143 1.00023 0.96096 1.20493 0.98645 1.00721 0.93178 1.21399 0.98278 0.95527 0.98488 1.21332 0.93461 0.85965 0.97668 0.93667 0.87549 0.97032 0.91850 0.92142 0.91296 0.91726 0.76514 0.90325 0.90304 0.87611 0.87920 0.90732 0.90733 0.91203 0.90568 0.96451 0.95824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.92 10.09 55.49 0.56 -26.36 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.92 22.08 29.55 -169.99 -5.02 17.05 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.22 -6.27 10.27 -15.06 -0.15 -6.42 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.46 3.39 -170.06 -0.58 -16.04 16 10 C 0.15 3.66 5.89 -2.53 -0.01 3.65 16 11 C -0.14 -2.51 6.53 -24.58 -0.16 -2.67 16 12 C -0.11 -1.89 2.96 -88.78 -0.26 -2.15 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.13 1.94 5.02 -4.04 -0.02 1.92 16 15 N -0.72 -9.15 5.38 -60.29 -0.32 -9.48 16 16 C 0.51 6.84 7.14 -10.98 -0.08 6.76 16 17 O -0.54 -9.31 15.90 5.55 0.09 -9.23 16 18 C -0.11 -1.08 2.57 -91.56 -0.24 -1.31 16 19 H 0.10 0.89 8.13 -51.93 -0.42 0.47 16 20 C -0.08 -0.69 5.28 -28.18 -0.15 -0.84 16 21 C -0.15 -1.20 9.81 -35.90 -0.35 -1.56 16 22 C -0.16 -1.19 9.81 -35.90 -0.35 -1.54 16 23 C -0.09 -0.72 6.11 -28.22 -0.17 -0.89 16 24 C -0.10 -0.97 4.70 -26.56 -0.12 -1.09 16 25 C 0.14 2.88 6.75 -3.06 -0.02 2.86 16 26 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.11 2.90 5.88 -51.93 -0.31 2.59 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.40 4.25 8.16 -40.82 -0.33 3.91 16 34 H 0.08 0.57 7.91 -51.93 -0.41 0.16 16 35 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.11 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 41 H 0.08 0.82 7.90 -51.93 -0.41 0.41 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.49 7.68 -51.93 -0.40 0.09 16 LS Contribution 341.06 15.07 5.14 5.14 Total: -1.00 -31.86 341.06 -9.63 -41.50 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.30 Total: 1.11 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -2.19 Total: -3.70 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.34 Total: -51.88 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.86 -9.63 -41.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028401242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.084 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds