Wall clock time and date at job start Tue Mar 31 2020 00:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00309 * 2 1 4 4 H 1.48497 * 109.47285 * 264.41089 * 3 2 1 5 5 H 1.48501 * 109.46954 * 24.41184 * 3 2 1 6 6 H 1.48502 * 109.47541 * 144.41135 * 3 2 1 7 7 C 1.38815 * 119.99692 * 179.72289 * 2 1 3 8 8 H 1.07994 * 120.00379 * 338.34725 * 7 2 1 9 9 N 1.36938 * 119.99741 * 158.34110 * 7 2 1 10 10 C 1.47425 * 125.64894 * 338.04867 * 9 7 2 11 11 C 1.54913 * 104.83121 * 204.08772 * 10 9 7 12 12 C 1.55157 * 101.58334 * 322.99458 * 11 10 9 13 13 H 1.09005 * 110.71847 * 276.95876 * 12 11 10 14 14 C 1.53000 * 110.72249 * 153.86506 * 12 11 10 15 15 N 1.46497 * 109.47214 * 174.99830 * 14 12 11 16 16 C 1.34771 * 119.99810 * 180.02562 * 15 14 12 17 17 O 1.21281 * 120.00523 * 359.97438 * 16 15 14 18 18 C 1.50708 * 120.00137 * 180.02562 * 16 15 14 19 19 H 1.09004 * 115.51959 * 325.58298 * 18 16 15 20 20 C 1.52996 * 117.46387 * 111.07672 * 18 16 15 21 21 H 1.09006 * 119.29503 * 356.28981 * 20 18 16 22 22 C 1.54288 * 118.18109 * 201.25132 * 20 18 16 23 23 C 1.54886 * 104.16554 * 272.15548 * 22 20 18 24 24 C 1.54888 * 102.74633 * 37.95178 * 23 22 20 25 25 C 1.52992 * 117.46292 * 180.08759 * 18 16 15 26 26 H 1.09002 * 119.30318 * 4.63214 * 25 18 16 27 27 C 1.47024 * 125.64576 * 157.73799 * 9 7 2 28 28 H 0.97003 * 119.99510 * 0.27231 * 1 2 3 29 29 H 1.08997 * 110.36634 * 322.92829 * 10 9 7 30 30 H 1.08998 * 110.36570 * 85.14307 * 10 9 7 31 31 H 1.09001 * 111.00077 * 81.06498 * 11 10 9 32 32 H 1.09003 * 111.00526 * 204.91483 * 11 10 9 33 33 H 1.08998 * 109.46802 * 295.00206 * 14 12 11 34 34 H 1.09004 * 109.46729 * 54.99487 * 14 12 11 35 35 H 0.96996 * 119.99892 * 359.97438 * 15 14 12 36 36 H 1.09001 * 110.49286 * 153.49153 * 22 20 18 37 37 H 1.08998 * 110.62322 * 30.88530 * 22 20 18 38 38 H 1.09001 * 110.76092 * 279.63455 * 23 22 20 39 39 H 1.09003 * 110.75554 * 156.26726 * 23 22 20 40 40 H 1.09003 * 110.48810 * 203.37548 * 24 23 22 41 41 H 1.09006 * 110.60134 * 80.79315 * 24 23 22 42 42 H 1.08996 * 109.88292 * 298.39469 * 27 9 7 43 43 H 1.09000 * 109.88387 * 59.56707 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6159 1.9781 -1.3934 5 1 1.3937 2.6838 0.5786 6 1 3.4838 1.4771 0.8148 7 6 2.0102 -1.2022 0.0058 8 1 1.5274 -2.1028 0.3553 9 7 3.3071 -1.2462 -0.4317 10 6 3.9437 -0.2679 -1.3323 11 6 5.1106 -1.0409 -1.9962 12 6 5.6028 -1.9295 -0.8234 13 1 6.2813 -1.3733 -0.1765 14 6 6.2782 -3.1969 -1.3509 15 7 6.8366 -3.9558 -0.2291 16 6 7.4832 -5.1163 -0.4561 17 8 7.6023 -5.5328 -1.5889 18 6 8.0572 -5.8973 0.6979 19 1 8.4444 -5.2996 1.5231 20 6 7.3969 -7.2335 1.0436 21 1 6.5084 -7.5470 0.4953 22 6 7.6044 -7.8034 2.4623 23 6 8.9122 -8.6260 2.3528 24 6 9.7823 -7.7603 1.4081 25 6 8.7812 -7.2056 0.3738 26 1 8.9261 -7.4912 -0.6681 27 6 4.2970 -2.2734 -0.0759 28 1 -0.4849 0.8401 -0.0040 29 1 3.2342 0.0701 -2.0876 30 1 4.3237 0.5804 -0.7631 31 1 4.7531 -1.6513 -2.8255 32 1 5.8944 -0.3584 -2.3249 33 1 5.5436 -3.8092 -1.8740 34 1 7.0784 -2.9228 -2.0385 35 1 6.7417 -3.6226 0.6768 36 1 6.7705 -8.4479 2.7403 37 1 7.7202 -6.9972 3.1867 38 1 8.7179 -9.6035 1.9115 39 1 9.3866 -8.7290 3.3288 40 1 10.5380 -8.3733 0.9169 41 1 10.2525 -6.9456 1.9589 42 1 4.4702 -2.2643 1.0002 43 1 3.9410 -3.2552 -0.3880 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028461595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:29 Heat of formation + Delta-G solvation = 2.742980 kcal Electronic energy + Delta-G solvation = -21424.259414 eV Core-core repulsion = 18277.167200 eV Total energy + Delta-G solvation = -3147.092214 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.54615 -38.80623 -37.79546 -34.76053 -32.60266 -32.03113 -30.41898 -28.69630 -28.54292 -26.23990 -24.33141 -22.84946 -21.18200 -20.91249 -20.18309 -19.94825 -19.63245 -17.61884 -16.83308 -16.16620 -15.78020 -15.40794 -15.20484 -14.78063 -14.57789 -13.69383 -13.62536 -13.46924 -13.26086 -13.08974 -12.69071 -12.23307 -12.14664 -11.78844 -11.62945 -11.59768 -11.45592 -11.27278 -11.17018 -10.99945 -10.60484 -10.53718 -10.36254 -10.17555 -10.09494 -10.03118 -9.72021 -9.47568 -9.03776 -8.66314 -7.01950 -5.96398 -3.28728 2.39279 3.04366 3.33822 3.46397 3.49226 3.50501 4.22752 4.39813 4.44894 4.53601 4.78200 4.87358 4.90779 4.93205 4.99451 5.09748 5.10412 5.14361 5.22732 5.27857 5.40218 5.46742 5.52255 5.61977 5.70313 5.75724 5.78116 5.80223 5.86345 5.98892 6.03532 6.07554 6.10890 6.27655 6.40792 6.51697 6.62062 6.72606 6.75435 7.49351 7.74314 8.20222 8.30984 8.83111 9.67673 10.18113 11.19965 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030463 B = 0.003251 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.924001 B = 8611.459573 C = 9123.578182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.609 5.609 10 C 0.113 3.887 11 C -0.121 4.121 12 C -0.116 4.116 13 H 0.080 0.920 14 C 0.133 3.867 15 N -0.721 5.721 16 C 0.542 3.458 17 O -0.544 6.544 18 C -0.164 4.164 19 H 0.120 0.880 20 C -0.136 4.136 21 H 0.115 0.885 22 C -0.097 4.097 23 C -0.123 4.123 24 C -0.097 4.097 25 C -0.132 4.132 26 H 0.122 0.878 27 C 0.140 3.860 28 H 0.263 0.737 29 H 0.059 0.941 30 H 0.024 0.976 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.403 0.597 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.029 0.971 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.872 -12.721 3.568 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.107 0.893 9 N -0.336 5.336 10 C -0.012 4.012 11 C -0.160 4.160 12 C -0.136 4.136 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.371 5.371 16 C 0.328 3.672 17 O -0.422 6.422 18 C -0.185 4.185 19 H 0.137 0.863 20 C -0.154 4.154 21 H 0.133 0.867 22 C -0.134 4.134 23 C -0.161 4.161 24 C -0.135 4.135 25 C -0.151 4.151 26 H 0.140 0.860 27 C 0.014 3.986 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.237 0.763 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.047 0.953 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 19.687 -12.930 2.788 23.718 hybrid contribution 0.274 1.388 0.503 1.501 sum 19.962 -11.542 3.291 23.292 Atomic orbital electron populations 1.69840 1.05609 1.26631 1.53103 1.25089 0.95181 0.97472 0.99812 0.86905 0.79159 0.84591 0.77838 1.21147 1.23007 1.20313 1.18626 0.84036 0.95240 1.39181 0.89267 1.44775 1.08838 1.27266 1.52712 1.21933 0.93642 0.92651 0.93020 1.22717 0.98188 0.98227 0.96917 1.22470 0.97469 0.95119 0.98514 0.90214 1.21425 0.97502 0.91777 0.88381 1.45971 1.56866 1.23041 1.11263 1.19570 0.77702 0.80741 0.89183 1.90690 1.58846 1.69013 1.23637 1.22368 1.05468 0.91021 0.99619 0.86254 1.23240 0.97704 0.96698 0.97784 0.86666 1.22011 0.97952 0.99199 0.94262 1.22700 0.95133 0.98907 0.99351 1.22011 0.96851 0.98954 0.95661 1.23230 0.93922 0.97394 1.00531 0.86044 1.21419 0.87459 0.93381 0.96298 0.92672 0.92289 0.95864 0.90786 0.91385 0.91024 0.91520 0.76279 0.90746 0.91037 0.91114 0.91172 0.90913 0.91255 0.95345 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.15 13.97 55.49 0.78 -27.38 16 2 C 0.02 0.68 5.43 -17.43 -0.09 0.59 16 3 Si 0.88 22.62 24.32 -169.99 -4.13 18.49 16 4 H -0.28 -6.99 6.62 56.52 0.37 -6.61 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.28 -6.97 6.77 56.52 0.38 -6.59 16 7 C -0.24 -6.96 10.55 -15.06 -0.16 -7.11 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 N -0.61 -14.69 3.16 -170.07 -0.54 -15.23 16 10 C 0.11 2.42 4.72 -2.53 -0.01 2.40 16 11 C -0.12 -1.97 6.54 -24.58 -0.16 -2.13 16 12 C -0.12 -1.75 2.95 -88.78 -0.26 -2.01 16 13 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 14 C 0.13 1.81 5.02 -4.04 -0.02 1.79 16 15 N -0.72 -8.78 5.47 -60.29 -0.33 -9.11 16 16 C 0.54 7.16 7.61 -10.98 -0.08 7.08 16 17 O -0.54 -9.20 16.33 5.56 0.09 -9.11 16 18 C -0.16 -1.64 5.74 -91.77 -0.53 -2.17 16 19 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 20 C -0.14 -1.27 6.64 -89.53 -0.59 -1.87 16 21 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 22 C -0.10 -0.70 6.63 -25.06 -0.17 -0.87 16 23 C -0.12 -0.78 6.91 -24.74 -0.17 -0.95 16 24 C -0.10 -0.69 6.62 -25.08 -0.17 -0.86 16 25 C -0.13 -1.26 6.39 -89.55 -0.57 -1.83 16 26 H 0.12 1.34 7.79 -51.93 -0.40 0.93 16 27 C 0.14 2.67 6.76 -3.06 -0.02 2.65 16 28 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 29 H 0.06 1.35 7.03 -51.93 -0.37 0.99 16 30 H 0.02 0.52 5.51 -51.93 -0.29 0.24 16 31 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.09 7.94 -51.93 -0.41 0.68 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.40 4.09 8.47 -40.82 -0.35 3.75 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.03 0.67 7.69 -51.93 -0.40 0.27 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -33.25 338.79 -9.35 -42.60 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -7.31 Total: -0.08 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -3.01 Total: -5.29 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.09 Total: -51.71 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.13 Total: 18.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.25 -9.35 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028461595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.342 kcal (2) G-P(sol) polarization free energy of solvation -33.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds