Wall clock time and date at job start Tue Mar 31 2020 00:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00309 * 2 1 4 4 H 1.48497 * 109.47285 * 264.41089 * 3 2 1 5 5 H 1.48501 * 109.46954 * 24.41184 * 3 2 1 6 6 H 1.48502 * 109.47541 * 144.41135 * 3 2 1 7 7 C 1.38815 * 119.99692 * 179.72289 * 2 1 3 8 8 H 1.07994 * 120.00379 * 338.34725 * 7 2 1 9 9 N 1.36938 * 119.99741 * 158.34110 * 7 2 1 10 10 C 1.47425 * 125.64894 * 338.04867 * 9 7 2 11 11 C 1.54913 * 104.83121 * 204.08772 * 10 9 7 12 12 C 1.55157 * 101.58334 * 322.99458 * 11 10 9 13 13 H 1.09005 * 110.71847 * 276.95876 * 12 11 10 14 14 C 1.53000 * 110.72249 * 153.86506 * 12 11 10 15 15 N 1.46497 * 109.47214 * 174.99830 * 14 12 11 16 16 C 1.34771 * 119.99810 * 180.02562 * 15 14 12 17 17 O 1.21281 * 120.00523 * 359.97438 * 16 15 14 18 18 C 1.50708 * 120.00137 * 180.02562 * 16 15 14 19 19 H 1.09004 * 115.51959 * 325.58298 * 18 16 15 20 20 C 1.52996 * 117.46387 * 111.07672 * 18 16 15 21 21 H 1.09006 * 119.29503 * 356.28981 * 20 18 16 22 22 C 1.54288 * 118.18109 * 201.25132 * 20 18 16 23 23 C 1.54886 * 104.16554 * 272.15548 * 22 20 18 24 24 C 1.54888 * 102.74633 * 37.95178 * 23 22 20 25 25 C 1.52992 * 117.46292 * 180.08759 * 18 16 15 26 26 H 1.09002 * 119.30318 * 4.63214 * 25 18 16 27 27 C 1.47024 * 125.64576 * 157.73799 * 9 7 2 28 28 H 0.97003 * 119.99510 * 0.27231 * 1 2 3 29 29 H 1.08997 * 110.36634 * 322.92829 * 10 9 7 30 30 H 1.08998 * 110.36570 * 85.14307 * 10 9 7 31 31 H 1.09001 * 111.00077 * 81.06498 * 11 10 9 32 32 H 1.09003 * 111.00526 * 204.91483 * 11 10 9 33 33 H 1.08998 * 109.46802 * 295.00206 * 14 12 11 34 34 H 1.09004 * 109.46729 * 54.99487 * 14 12 11 35 35 H 0.96996 * 119.99892 * 359.97438 * 15 14 12 36 36 H 1.09001 * 110.49286 * 153.49153 * 22 20 18 37 37 H 1.08998 * 110.62322 * 30.88530 * 22 20 18 38 38 H 1.09001 * 110.76092 * 279.63455 * 23 22 20 39 39 H 1.09003 * 110.75554 * 156.26726 * 23 22 20 40 40 H 1.09003 * 110.48810 * 203.37548 * 24 23 22 41 41 H 1.09006 * 110.60134 * 80.79315 * 24 23 22 42 42 H 1.08996 * 109.88292 * 298.39469 * 27 9 7 43 43 H 1.09000 * 109.88387 * 59.56707 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6159 1.9781 -1.3934 5 1 1.3937 2.6838 0.5786 6 1 3.4838 1.4771 0.8148 7 6 2.0102 -1.2022 0.0058 8 1 1.5274 -2.1028 0.3553 9 7 3.3071 -1.2462 -0.4317 10 6 3.9437 -0.2679 -1.3323 11 6 5.1106 -1.0409 -1.9962 12 6 5.6028 -1.9295 -0.8234 13 1 6.2813 -1.3733 -0.1765 14 6 6.2782 -3.1969 -1.3509 15 7 6.8366 -3.9558 -0.2291 16 6 7.4832 -5.1163 -0.4561 17 8 7.6023 -5.5328 -1.5889 18 6 8.0572 -5.8973 0.6979 19 1 8.4444 -5.2996 1.5231 20 6 7.3969 -7.2335 1.0436 21 1 6.5084 -7.5470 0.4953 22 6 7.6044 -7.8034 2.4623 23 6 8.9122 -8.6260 2.3528 24 6 9.7823 -7.7603 1.4081 25 6 8.7812 -7.2056 0.3738 26 1 8.9261 -7.4912 -0.6681 27 6 4.2970 -2.2734 -0.0759 28 1 -0.4849 0.8401 -0.0040 29 1 3.2342 0.0701 -2.0876 30 1 4.3237 0.5804 -0.7631 31 1 4.7531 -1.6513 -2.8255 32 1 5.8944 -0.3584 -2.3249 33 1 5.5436 -3.8092 -1.8740 34 1 7.0784 -2.9228 -2.0385 35 1 6.7417 -3.6226 0.6768 36 1 6.7705 -8.4479 2.7403 37 1 7.7202 -6.9972 3.1867 38 1 8.7179 -9.6035 1.9115 39 1 9.3866 -8.7290 3.3288 40 1 10.5380 -8.3733 0.9169 41 1 10.2525 -6.9456 1.9589 42 1 4.4702 -2.2643 1.0002 43 1 3.9410 -3.2552 -0.3880 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028461595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:28 Heat of formation + Delta-G solvation = -19.331641 kcal Electronic energy + Delta-G solvation = -21425.216641 eV Core-core repulsion = 18277.167200 eV Total energy + Delta-G solvation = -3148.049441 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.43449 -39.92425 -39.08238 -36.09737 -34.46148 -32.83588 -32.06976 -30.18148 -29.12979 -27.75674 -25.74121 -24.04819 -22.74665 -21.64493 -21.39967 -20.82917 -20.62952 -18.98799 -18.41396 -17.33760 -17.19398 -16.84010 -16.23685 -15.85753 -15.55043 -15.42746 -15.03612 -14.61316 -14.26834 -14.02096 -13.95003 -13.81676 -13.60108 -13.28630 -12.96826 -12.72284 -12.46377 -12.28644 -12.25945 -12.03844 -11.97043 -11.85694 -11.68829 -11.67524 -11.40076 -11.11979 -11.00031 -10.80626 -10.60988 -10.11469 -9.02973 -8.20901 -5.49846 1.30592 1.38135 1.41217 1.48163 2.08436 2.40322 2.72350 3.02170 3.28788 3.48418 3.71599 3.71981 3.77202 3.83581 3.86233 4.08068 4.21609 4.26854 4.36961 4.37995 4.49435 4.53471 4.55388 4.69594 4.75583 4.78276 4.83817 4.83985 5.00030 5.01753 5.05481 5.16728 5.17287 5.22879 5.23518 5.28744 5.33141 5.44846 5.51586 5.69127 6.08462 6.52084 6.75701 7.20103 7.51820 8.09703 8.99490 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030463 B = 0.003251 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.924001 B = 8611.459573 C = 9123.578182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.037 4.037 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.308 1.308 6 H -0.265 1.265 7 C -0.240 4.240 8 H 0.052 0.948 9 N -0.630 5.630 10 C 0.102 3.898 11 C -0.111 4.111 12 C -0.095 4.095 13 H 0.106 0.894 14 C 0.142 3.858 15 N -0.713 5.713 16 C 0.538 3.462 17 O -0.587 6.587 18 C -0.163 4.163 19 H 0.146 0.854 20 C -0.139 4.139 21 H 0.096 0.904 22 C -0.093 4.093 23 C -0.119 4.119 24 C -0.092 4.092 25 C -0.137 4.137 26 H 0.099 0.901 27 C 0.135 3.865 28 H 0.263 0.737 29 H 0.037 0.963 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.415 0.585 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.036 0.964 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.198 -12.182 4.460 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.232 4.232 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.236 1.236 6 H -0.190 1.190 7 C -0.369 4.369 8 H 0.070 0.930 9 N -0.357 5.357 10 C -0.022 4.022 11 C -0.149 4.149 12 C -0.114 4.114 13 H 0.125 0.875 14 C 0.018 3.982 15 N -0.364 5.364 16 C 0.326 3.674 17 O -0.468 6.468 18 C -0.184 4.184 19 H 0.164 0.836 20 C -0.158 4.158 21 H 0.115 0.885 22 C -0.131 4.131 23 C -0.157 4.157 24 C -0.130 4.130 25 C -0.156 4.156 26 H 0.117 0.883 27 C 0.010 3.990 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.252 0.748 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 23.059 -12.396 3.695 26.439 hybrid contribution -0.817 1.093 0.188 1.377 sum 22.241 -11.303 3.883 25.249 Atomic orbital electron populations 1.69977 1.07412 1.27425 1.55624 1.25775 0.95856 1.01092 1.00437 0.85821 0.77853 0.79615 0.78685 1.19373 1.23616 1.19022 1.18548 0.86211 0.94041 1.38092 0.93015 1.44900 1.08340 1.28881 1.53554 1.22089 0.94851 0.92944 0.92354 1.22697 0.97067 0.98394 0.96784 1.22338 0.95561 0.95666 0.97881 0.87546 1.21227 0.97292 0.90908 0.88820 1.45898 1.56152 1.22726 1.11590 1.20126 0.77120 0.80740 0.89457 1.90670 1.60545 1.70010 1.25579 1.22400 1.05749 0.91174 0.99085 0.83589 1.23312 0.97040 0.96250 0.99194 0.88536 1.22048 0.98668 0.99614 0.92752 1.22702 0.94456 0.98474 1.00050 1.22035 0.96435 0.99403 0.95080 1.23283 0.94954 0.97109 1.00228 0.88269 1.21582 0.88463 0.91565 0.97341 0.92779 0.94451 0.95463 0.90734 0.87489 0.93068 0.90262 0.74838 0.90417 0.89950 0.91227 0.89373 0.90249 0.90110 0.94635 0.95914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.29 13.97 21.65 0.30 -60.99 16 2 C -0.04 -2.20 5.43 84.86 0.46 -1.74 16 3 Si 0.95 46.80 24.32 68.60 1.67 48.47 16 4 H -0.27 -12.33 6.62 99.48 0.66 -11.67 16 5 H -0.31 -15.29 7.11 99.48 0.71 -14.58 16 6 H -0.27 -12.37 6.77 99.48 0.67 -11.70 16 7 C -0.24 -14.06 10.55 84.03 0.89 -13.18 16 8 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 9 N -0.63 -30.09 3.16 -691.97 -2.19 -32.27 16 10 C 0.10 4.17 4.72 86.86 0.41 4.58 16 11 C -0.11 -3.21 6.54 31.99 0.21 -3.00 16 12 C -0.10 -2.56 2.95 -9.60 -0.03 -2.58 16 13 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 14 C 0.14 3.54 5.02 86.38 0.43 3.97 16 15 N -0.71 -15.86 5.47 -463.06 -2.53 -18.39 16 16 C 0.54 13.62 7.61 87.66 0.67 14.29 16 17 O -0.59 -19.84 16.33 -3.03 -0.05 -19.89 16 18 C -0.16 -3.00 5.74 -11.54 -0.07 -3.07 16 19 H 0.15 1.87 8.14 -2.39 -0.02 1.85 16 20 C -0.14 -2.48 6.64 -10.09 -0.07 -2.55 16 21 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 22 C -0.09 -1.15 6.63 31.68 0.21 -0.94 16 23 C -0.12 -1.20 6.91 31.88 0.22 -0.98 16 24 C -0.09 -1.08 6.62 31.67 0.21 -0.88 16 25 C -0.14 -2.47 6.39 -10.10 -0.06 -2.54 16 26 H 0.10 2.23 7.79 -2.39 -0.02 2.21 16 27 C 0.13 5.00 6.76 86.73 0.59 5.58 16 28 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 29 H 0.04 1.67 7.03 -2.39 -0.02 1.65 16 30 H 0.03 1.12 5.51 -2.39 -0.01 1.11 16 31 H 0.07 2.17 8.05 -2.39 -0.02 2.15 16 32 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.05 1.51 7.94 -2.39 -0.02 1.50 16 34 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.42 7.23 8.47 -92.71 -0.79 6.45 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.02 0.89 7.69 -2.39 -0.02 0.87 16 Total: -1.00 -74.75 338.79 1.39 -73.36 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.12 Total: 12.75 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 4.07 Total: -3.03 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -4.42 Total: -111.65 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.67 Total: 48.47 kcal Total: -74.75 1.39 -73.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028461595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.030 kcal (2) G-P(sol) polarization free energy of solvation -74.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds