Wall clock time and date at job start Tue Mar 31 2020 00:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48508 * 109.46676 * 270.00212 * 3 2 1 5 5 H 1.48502 * 109.46977 * 29.99510 * 3 2 1 6 6 H 1.48494 * 109.47494 * 150.00238 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.47016 * 125.65111 * 0.02562 * 9 7 2 11 11 C 1.54317 * 107.27257 * 181.02583 * 10 9 7 12 12 C 1.55150 * 102.94509 * 22.18903 * 11 10 9 13 13 H 1.09006 * 111.00336 * 82.57404 * 12 11 10 14 14 C 1.52999 * 111.01025 * 206.38609 * 12 11 10 15 15 N 1.46494 * 109.47400 * 184.99918 * 14 12 11 16 16 C 1.34777 * 119.99918 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00148 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00140 * 180.02562 * 16 15 14 19 19 H 1.09010 * 115.52483 * 325.50136 * 18 16 15 20 20 C 1.53000 * 117.46371 * 110.95877 * 18 16 15 21 21 H 1.09003 * 119.29702 * 356.29204 * 20 18 16 22 22 C 1.54269 * 118.19948 * 201.21966 * 20 18 16 23 23 C 1.54892 * 104.19233 * 272.20875 * 22 20 18 24 24 C 1.54888 * 102.74815 * 37.94349 * 23 22 20 25 25 C 1.52995 * 117.46260 * 180.02562 * 18 16 15 26 26 H 1.08996 * 119.29829 * 4.64300 * 25 18 16 27 27 C 1.47422 * 125.64544 * 179.71095 * 9 7 2 28 28 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.88272 * 300.44289 * 10 9 7 30 30 H 1.08998 * 109.88129 * 61.44856 * 10 9 7 31 31 H 1.09003 * 110.72524 * 140.55669 * 11 10 9 32 32 H 1.09001 * 110.71935 * 263.65117 * 11 10 9 33 33 H 1.09000 * 109.46889 * 305.00584 * 14 12 11 34 34 H 1.09008 * 109.46739 * 64.99853 * 14 12 11 35 35 H 0.97001 * 120.00137 * 0.02562 * 15 14 12 36 36 H 1.08994 * 110.48732 * 153.53423 * 22 20 18 37 37 H 1.08995 * 110.60104 * 30.93672 * 22 20 18 38 38 H 1.09001 * 110.75973 * 279.63031 * 23 22 20 39 39 H 1.08998 * 110.91382 * 156.33506 * 23 22 20 40 40 H 1.09008 * 110.48706 * 203.37987 * 24 23 22 41 41 H 1.09001 * 110.48905 * 80.73537 * 24 23 22 42 42 H 1.08996 * 110.37059 * 274.74940 * 27 9 7 43 43 H 1.09001 * 110.36609 * 37.07235 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4484 -4.0441 0.0263 12 6 0.8514 -4.6560 0.6119 13 1 0.8557 -4.5961 1.7003 14 6 1.0364 -6.1011 0.1446 15 7 2.2049 -6.6835 0.8090 16 6 2.5626 -7.9568 0.5497 17 8 1.9173 -8.6204 -0.2340 18 6 3.7642 -8.5562 1.2336 19 1 4.5887 -7.8685 1.4226 20 6 3.5125 -9.6559 2.2671 21 1 2.4870 -9.9260 2.5195 22 6 4.6080 -9.9343 3.3170 23 6 5.5358 -10.9686 2.6325 24 6 5.5602 -10.4850 1.1613 25 6 4.1182 -10.0058 0.8961 26 1 3.5489 -10.5288 0.1276 27 6 1.9334 -3.7311 -0.0050 28 1 -0.4849 0.8400 -0.0004 29 1 -0.5582 -2.0521 0.8826 30 1 -0.5539 -2.0822 -0.9014 31 1 -1.2990 -4.2515 0.6757 32 1 -0.6340 -4.4176 -0.9808 33 1 0.1485 -6.6809 0.3967 34 1 1.1866 -6.1175 -0.9350 35 1 2.7208 -6.1530 1.4362 36 1 4.1706 -10.3547 4.2225 37 1 5.1584 -9.0224 3.5480 38 1 5.1145 -11.9715 2.7025 39 1 6.5359 -10.9404 3.0651 40 1 5.8177 -11.3073 0.4936 41 1 6.2637 -9.6610 1.0421 42 1 2.1629 -4.0395 -1.0249 43 1 2.8351 -3.7419 0.6074 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028461597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:33 Heat of formation + Delta-G solvation = 0.178282 kcal Electronic energy + Delta-G solvation = -21303.491800 eV Core-core repulsion = 18156.288373 eV Total energy + Delta-G solvation = -3147.203427 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.50255 -38.67841 -37.49798 -34.62451 -32.54916 -31.98350 -29.81420 -28.55071 -28.32817 -25.82293 -24.41365 -22.91683 -21.02027 -20.43997 -19.99345 -19.94601 -19.54189 -17.54796 -16.76810 -16.15111 -15.52328 -15.22888 -15.04005 -14.63738 -14.26814 -13.76058 -13.50503 -13.39694 -13.21588 -12.86778 -12.35271 -12.02851 -11.81544 -11.74343 -11.57331 -11.44726 -11.39046 -11.16910 -10.90514 -10.80278 -10.41354 -10.33734 -10.15472 -10.10058 -9.99883 -9.88188 -9.67390 -9.60839 -8.94419 -8.60498 -6.83737 -5.71760 -3.05321 2.43717 3.12463 3.39459 3.44208 3.46267 3.51713 4.26093 4.41351 4.46051 4.48905 4.86796 4.91821 4.93017 5.09964 5.13697 5.16216 5.22937 5.29481 5.41284 5.42969 5.52454 5.54979 5.67949 5.71109 5.75880 5.80894 5.89700 5.98268 6.05059 6.06699 6.09707 6.35109 6.45719 6.50227 6.53556 6.69142 6.91292 7.55522 7.57465 7.62943 7.82460 8.25783 8.26732 9.21705 9.82129 10.48325 11.40044 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.003041 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.906860 B = 9204.787023 C = 9809.798576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.117 4.117 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.719 5.719 16 C 0.541 3.459 17 O -0.546 6.546 18 C -0.163 4.163 19 H 0.120 0.880 20 C -0.138 4.138 21 H 0.114 0.886 22 C -0.096 4.096 23 C -0.123 4.123 24 C -0.098 4.098 25 C -0.131 4.131 26 H 0.122 0.878 27 C 0.142 3.858 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.403 0.597 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.019 0.981 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.057 -19.885 6.061 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.137 4.137 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.370 5.370 16 C 0.327 3.673 17 O -0.424 6.424 18 C -0.184 4.184 19 H 0.138 0.862 20 C -0.156 4.156 21 H 0.132 0.868 22 C -0.134 4.134 23 C -0.161 4.161 24 C -0.135 4.135 25 C -0.150 4.150 26 H 0.140 0.860 27 C 0.016 3.984 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.237 0.763 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.037 0.963 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.524 -20.104 5.498 22.159 hybrid contribution 0.583 1.349 0.222 1.486 sum 8.107 -18.755 5.719 21.217 Atomic orbital electron populations 1.69965 1.04894 1.25029 1.57084 1.24813 0.95731 0.97697 1.02279 0.86115 0.78551 0.83484 0.77582 1.21604 1.21672 1.20703 1.19057 0.90416 0.82458 1.43800 0.90490 1.44487 1.01754 0.99886 1.87181 1.21147 0.84319 0.88176 1.01136 1.22851 0.95438 0.99400 0.99699 1.22650 0.98597 0.91967 1.00474 0.90189 1.21415 0.87192 0.93200 0.97332 1.46003 1.31409 1.13095 1.46455 1.19560 0.84544 0.81644 0.81547 1.90684 1.54636 1.61114 1.35936 1.22389 0.99013 0.93103 1.03890 0.86167 1.23238 1.00297 1.00909 0.91199 0.86821 1.21998 0.95130 0.99265 0.96983 1.22696 0.99490 0.99097 0.94805 1.22016 0.94288 1.00735 0.96507 1.23239 0.97368 0.94974 0.99401 0.86039 1.21622 0.93957 0.86123 0.96699 0.93749 0.93559 0.93891 0.92007 0.92204 0.91730 0.91338 0.76288 0.90885 0.91026 0.91190 0.91168 0.90874 0.91159 0.96305 0.94626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.20 10.31 55.49 0.57 -26.63 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 8 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 9 N -0.61 -15.47 3.39 -169.94 -0.58 -16.05 16 10 C 0.18 4.29 5.38 -3.07 -0.02 4.27 16 11 C -0.13 -2.48 6.41 -24.90 -0.16 -2.64 16 12 C -0.12 -1.95 3.06 -88.35 -0.27 -2.22 16 13 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 14 C 0.13 1.94 5.14 -4.05 -0.02 1.92 16 15 N -0.72 -9.34 5.50 -60.30 -0.33 -9.67 16 16 C 0.54 7.45 7.61 -10.99 -0.08 7.36 16 17 O -0.55 -9.51 16.33 5.56 0.09 -9.42 16 18 C -0.16 -1.70 5.73 -91.78 -0.53 -2.22 16 19 H 0.12 1.06 8.14 -51.92 -0.42 0.64 16 20 C -0.14 -1.26 6.64 -89.48 -0.59 -1.86 16 21 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 22 C -0.10 -0.67 6.63 -25.07 -0.17 -0.84 16 23 C -0.12 -0.78 6.91 -24.74 -0.17 -0.96 16 24 C -0.10 -0.73 6.62 -25.08 -0.17 -0.89 16 25 C -0.13 -1.29 6.39 -89.49 -0.57 -1.86 16 26 H 0.12 1.37 7.79 -51.93 -0.40 0.97 16 27 C 0.14 2.87 6.66 -2.41 -0.02 2.85 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.05 1.24 7.38 -51.93 -0.38 0.85 16 30 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.04 8.04 -51.93 -0.42 0.63 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.09 7.96 -51.92 -0.41 0.68 16 35 H 0.40 4.47 8.47 -40.82 -0.35 4.12 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.40 7.91 -51.93 -0.41 -0.02 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 344.24 15.07 5.19 5.19 Total: -1.00 -32.19 344.24 -10.48 -42.67 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.38 Total: 0.80 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -3.01 Total: -3.97 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.34 Total: -52.35 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.19 -10.48 -42.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028461597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.844 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds