Wall clock time and date at job start Tue Mar 31 2020 00:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99454 * 2 1 4 4 H 1.48501 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47481 * 299.99770 * 3 2 1 6 6 H 1.48498 * 109.47264 * 60.00226 * 3 2 1 7 7 C 1.38803 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00394 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99984 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64548 * 0.02607 * 9 7 2 11 11 C 1.54917 * 104.83227 * 155.82742 * 10 9 7 12 12 C 1.55154 * 101.57959 * 37.00937 * 11 10 9 13 13 H 1.08995 * 110.72500 * 83.04296 * 12 11 10 14 14 C 1.53000 * 110.71708 * 206.14028 * 12 11 10 15 15 N 1.46506 * 109.46853 * 185.00189 * 14 12 11 16 16 C 1.34778 * 119.99985 * 179.97438 * 15 14 12 17 17 O 1.21288 * 119.99991 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00386 * 179.97438 * 16 15 14 19 19 C 1.52996 * 119.29903 * 250.95152 * 18 16 15 20 20 C 1.53872 * 121.33558 * 179.11325 * 18 16 15 21 21 H 1.09004 * 121.32514 * 0.56651 * 20 18 16 22 22 C 1.54266 * 106.60044 * 221.93733 * 20 18 16 23 23 C 1.54893 * 104.19500 * 23.61099 * 22 20 18 24 24 C 1.54266 * 117.41024 * 45.28985 * 18 16 15 25 25 C 1.47025 * 125.65012 * 179.97438 * 9 7 2 26 26 H 0.96996 * 120.00622 * 0.02562 * 1 2 3 27 27 H 1.08996 * 110.37129 * 36.98764 * 10 9 7 28 28 H 1.09002 * 110.46274 * 274.70900 * 10 9 7 29 29 H 1.09005 * 111.00135 * 278.93623 * 11 10 9 30 30 H 1.08995 * 111.03910 * 155.10053 * 11 10 9 31 31 H 1.08997 * 109.47851 * 65.00247 * 14 12 11 32 32 H 1.09002 * 109.46883 * 304.99767 * 14 12 11 33 33 H 0.96994 * 119.99950 * 359.97438 * 15 14 12 34 34 H 1.09003 * 117.46100 * 355.35007 * 19 18 16 35 35 H 1.09004 * 117.46271 * 140.16063 * 19 18 16 36 36 H 1.09002 * 110.48438 * 142.28717 * 22 20 18 37 37 H 1.08998 * 110.48431 * 264.79545 * 22 20 18 38 38 H 1.09001 * 110.75228 * 203.74448 * 23 22 20 39 39 H 1.09000 * 110.75571 * 80.37081 * 23 22 20 40 40 H 1.09001 * 110.48620 * 235.05212 * 24 18 16 41 41 H 1.09004 * 110.48798 * 357.69046 * 24 18 16 42 42 H 1.09004 * 109.88054 * 61.68743 * 25 9 7 43 43 H 1.08994 * 109.87757 * 300.52190 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1413 -2.5332 -0.0005 11 6 -0.4015 -3.9318 -0.6138 12 6 0.7786 -4.7524 -0.0296 13 1 0.5450 -5.1017 0.9761 14 6 1.1234 -5.9303 -0.9431 15 7 2.1571 -6.7530 -0.3099 16 6 2.6201 -7.8532 -0.9359 17 8 2.1806 -8.1623 -2.0233 18 6 3.6838 -8.6992 -0.2850 19 6 5.1008 -8.6952 -0.8620 20 6 4.2199 -9.9722 -0.9629 21 1 3.8518 -10.2932 -1.9375 22 6 4.3494 -11.0395 0.1434 23 6 3.3519 -10.5782 1.2349 24 6 3.5063 -9.0373 1.2097 25 6 1.9320 -3.7274 -0.0016 26 1 -0.4851 0.8400 -0.0004 27 1 -0.5993 -1.7583 -0.6153 28 1 -0.5288 -2.4872 1.0172 29 1 -0.3519 -3.8966 -1.7021 30 1 -1.3588 -4.3330 -0.2812 31 1 1.4923 -5.5544 -1.8974 32 1 0.2311 -6.5335 -1.1106 33 1 2.5083 -6.5060 0.5598 34 1 5.2681 -8.1318 -1.7800 35 1 5.9311 -8.6997 -0.1558 36 1 4.0695 -12.0212 -0.2389 37 1 5.3658 -11.0599 0.5366 38 1 3.6328 -10.9788 2.2089 39 1 2.3339 -10.8688 0.9754 40 1 4.3860 -8.7327 1.7768 41 1 2.6111 -8.5577 1.6057 42 1 2.5285 -3.8650 0.9003 43 1 2.5584 -3.8500 -0.8851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028699584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:19 Heat of formation + Delta-G solvation = 4.246480 kcal Electronic energy + Delta-G solvation = -21700.125135 eV Core-core repulsion = 18553.098118 eV Total energy + Delta-G solvation = -3147.027017 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.56493 -38.46059 -37.41909 -34.63703 -32.51237 -31.84704 -29.98121 -28.88748 -27.96828 -25.62603 -24.06789 -22.97805 -22.00632 -20.61609 -20.24524 -19.80960 -18.91784 -17.28800 -16.81243 -15.95849 -15.69104 -15.14256 -14.85494 -14.64107 -14.14604 -13.69084 -13.56608 -13.41049 -13.22733 -12.77999 -12.50591 -12.01761 -11.77568 -11.69414 -11.51446 -11.41699 -11.36032 -11.22839 -10.95383 -10.82410 -10.57781 -10.39210 -10.12261 -10.01475 -9.93882 -9.86189 -9.65543 -9.45450 -8.92715 -8.65921 -6.83836 -5.66053 -3.07795 2.54212 3.17517 3.39194 3.42878 3.44622 3.47193 4.16179 4.34352 4.47715 4.50981 4.73694 4.93151 5.06158 5.11184 5.16850 5.25615 5.28574 5.39630 5.40455 5.49696 5.52416 5.55058 5.64274 5.71114 5.76090 5.81269 5.89064 5.94006 6.07451 6.09874 6.12478 6.34778 6.47506 6.56070 6.58706 6.73107 6.91012 7.50796 7.60086 7.62668 7.85175 8.29835 8.35956 9.21634 9.82588 10.47410 11.37973 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030894 B = 0.003313 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.116102 B = 8448.784435 C = 8810.950432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.114 4.114 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.719 5.719 16 C 0.553 3.447 17 O -0.546 6.546 18 C -0.176 4.176 19 C -0.124 4.124 20 C -0.130 4.130 21 H 0.119 0.881 22 C -0.096 4.096 23 C -0.123 4.123 24 C -0.088 4.088 25 C 0.142 3.858 26 H 0.251 0.749 27 H 0.107 0.893 28 H 0.012 0.988 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.402 0.598 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.018 0.982 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.595 -20.147 2.624 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.133 4.133 13 H 0.094 0.906 14 C 0.009 3.991 15 N -0.370 5.370 16 C 0.339 3.661 17 O -0.424 6.424 18 C -0.179 4.179 19 C -0.162 4.162 20 C -0.149 4.149 21 H 0.137 0.863 22 C -0.134 4.134 23 C -0.160 4.160 24 C -0.126 4.126 25 C 0.016 3.984 26 H 0.062 0.938 27 H 0.125 0.875 28 H 0.030 0.970 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.236 0.764 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.036 0.964 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.216 -20.117 1.846 21.136 hybrid contribution 0.539 1.089 0.490 1.310 sum 6.756 -19.028 2.336 20.326 Atomic orbital electron populations 1.69805 1.04890 1.24660 1.57744 1.24792 0.95741 0.97742 1.02472 0.85996 0.78646 0.83596 0.77253 1.20536 1.21717 1.21760 1.19127 0.90532 0.82490 1.42900 0.90482 1.44519 1.01999 0.99750 1.86826 1.21928 0.84676 0.92524 0.98177 1.23010 0.95519 0.98603 1.00333 1.22440 0.98305 0.94013 0.98572 0.90607 1.21476 0.90101 0.91034 0.96529 1.46019 1.41532 1.26213 1.23218 1.19339 0.81572 0.80437 0.84784 1.90686 1.59329 1.71314 1.21059 1.22429 0.96248 1.02836 0.96385 1.23493 0.91040 0.99273 1.02344 1.23758 1.03020 0.87989 1.00130 0.86255 1.21982 0.99619 0.97507 0.94252 1.22678 0.99882 0.94710 0.98745 1.21958 1.02538 0.96276 0.91800 1.21328 0.93439 0.85932 0.97699 0.93775 0.87534 0.97016 0.91845 0.92131 0.91281 0.91704 0.76402 0.87891 0.87910 0.90945 0.91052 0.90959 0.91153 0.90503 0.90801 0.96414 0.95816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.95 10.09 55.49 0.56 -26.39 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.22 -6.23 10.27 -15.06 -0.15 -6.38 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.54 3.39 -170.07 -0.58 -16.11 16 10 C 0.15 3.68 5.89 -2.53 -0.01 3.66 16 11 C -0.14 -2.53 6.53 -24.58 -0.16 -2.69 16 12 C -0.11 -1.91 2.96 -88.79 -0.26 -2.18 16 13 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 14 C 0.13 2.01 5.02 -4.04 -0.02 1.99 16 15 N -0.72 -9.67 5.30 -60.29 -0.32 -9.99 16 16 C 0.55 7.91 7.41 -10.99 -0.08 7.83 16 17 O -0.55 -9.87 16.79 5.55 0.09 -9.78 16 18 C -0.18 -1.89 2.60 -154.55 -0.40 -2.30 16 19 C -0.12 -1.17 10.00 -25.42 -0.25 -1.43 16 20 C -0.13 -1.28 6.64 -88.19 -0.59 -1.86 16 21 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 22 C -0.10 -0.71 6.64 -25.07 -0.17 -0.88 16 23 C -0.12 -0.92 6.91 -24.74 -0.17 -1.09 16 24 C -0.09 -0.74 6.18 -25.07 -0.15 -0.90 16 25 C 0.14 2.92 6.75 -3.06 -0.02 2.89 16 26 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.11 2.91 5.87 -51.93 -0.30 2.61 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.40 4.64 7.99 -40.82 -0.33 4.31 16 34 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.63 7.61 -51.93 -0.39 0.23 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.02 0.50 7.68 -51.93 -0.40 0.10 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -32.14 342.85 -9.94 -42.09 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.30 Total: 1.68 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -2.55 Total: -3.77 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.34 Total: -52.49 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.14 -9.94 -42.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028699584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.333 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds