Wall clock time and date at job start Tue Mar 31 2020 00:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99454 * 2 1 4 4 H 1.48501 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47481 * 299.99770 * 3 2 1 6 6 H 1.48498 * 109.47264 * 60.00226 * 3 2 1 7 7 C 1.38803 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00394 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99984 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64548 * 0.02607 * 9 7 2 11 11 C 1.54917 * 104.83227 * 155.82742 * 10 9 7 12 12 C 1.55154 * 101.57959 * 37.00937 * 11 10 9 13 13 H 1.08995 * 110.72500 * 83.04296 * 12 11 10 14 14 C 1.53000 * 110.71708 * 206.14028 * 12 11 10 15 15 N 1.46506 * 109.46853 * 185.00189 * 14 12 11 16 16 C 1.34778 * 119.99985 * 179.97438 * 15 14 12 17 17 O 1.21288 * 119.99991 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00386 * 179.97438 * 16 15 14 19 19 C 1.52996 * 119.29903 * 250.95152 * 18 16 15 20 20 C 1.53872 * 121.33558 * 179.11325 * 18 16 15 21 21 H 1.09004 * 121.32514 * 0.56651 * 20 18 16 22 22 C 1.54266 * 106.60044 * 221.93733 * 20 18 16 23 23 C 1.54893 * 104.19500 * 23.61099 * 22 20 18 24 24 C 1.54266 * 117.41024 * 45.28985 * 18 16 15 25 25 C 1.47025 * 125.65012 * 179.97438 * 9 7 2 26 26 H 0.96996 * 120.00622 * 0.02562 * 1 2 3 27 27 H 1.08996 * 110.37129 * 36.98764 * 10 9 7 28 28 H 1.09002 * 110.46274 * 274.70900 * 10 9 7 29 29 H 1.09005 * 111.00135 * 278.93623 * 11 10 9 30 30 H 1.08995 * 111.03910 * 155.10053 * 11 10 9 31 31 H 1.08997 * 109.47851 * 65.00247 * 14 12 11 32 32 H 1.09002 * 109.46883 * 304.99767 * 14 12 11 33 33 H 0.96994 * 119.99950 * 359.97438 * 15 14 12 34 34 H 1.09003 * 117.46100 * 355.35007 * 19 18 16 35 35 H 1.09004 * 117.46271 * 140.16063 * 19 18 16 36 36 H 1.09002 * 110.48438 * 142.28717 * 22 20 18 37 37 H 1.08998 * 110.48431 * 264.79545 * 22 20 18 38 38 H 1.09001 * 110.75228 * 203.74448 * 23 22 20 39 39 H 1.09000 * 110.75571 * 80.37081 * 23 22 20 40 40 H 1.09001 * 110.48620 * 235.05212 * 24 18 16 41 41 H 1.09004 * 110.48798 * 357.69046 * 24 18 16 42 42 H 1.09004 * 109.88054 * 61.68743 * 25 9 7 43 43 H 1.08994 * 109.87757 * 300.52190 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1413 -2.5332 -0.0005 11 6 -0.4015 -3.9318 -0.6138 12 6 0.7786 -4.7524 -0.0296 13 1 0.5450 -5.1017 0.9761 14 6 1.1234 -5.9303 -0.9431 15 7 2.1571 -6.7530 -0.3099 16 6 2.6201 -7.8532 -0.9359 17 8 2.1806 -8.1623 -2.0233 18 6 3.6838 -8.6992 -0.2850 19 6 5.1008 -8.6952 -0.8620 20 6 4.2199 -9.9722 -0.9629 21 1 3.8518 -10.2932 -1.9375 22 6 4.3494 -11.0395 0.1434 23 6 3.3519 -10.5782 1.2349 24 6 3.5063 -9.0373 1.2097 25 6 1.9320 -3.7274 -0.0016 26 1 -0.4851 0.8400 -0.0004 27 1 -0.5993 -1.7583 -0.6153 28 1 -0.5288 -2.4872 1.0172 29 1 -0.3519 -3.8966 -1.7021 30 1 -1.3588 -4.3330 -0.2812 31 1 1.4923 -5.5544 -1.8974 32 1 0.2311 -6.5335 -1.1106 33 1 2.5083 -6.5060 0.5598 34 1 5.2681 -8.1318 -1.7800 35 1 5.9311 -8.6997 -0.1558 36 1 4.0695 -12.0212 -0.2389 37 1 5.3658 -11.0599 0.5366 38 1 3.6328 -10.9788 2.2089 39 1 2.3339 -10.8688 0.9754 40 1 4.3860 -8.7327 1.7768 41 1 2.6111 -8.5577 1.6057 42 1 2.5285 -3.8650 0.9003 43 1 2.5584 -3.8500 -0.8851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028699584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:18 Heat of formation + Delta-G solvation = -15.317987 kcal Electronic energy + Delta-G solvation = -21700.973514 eV Core-core repulsion = 18553.098118 eV Total energy + Delta-G solvation = -3147.875396 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50573 -39.69452 -38.80983 -36.08806 -34.33095 -32.50957 -31.72310 -30.19744 -29.11130 -27.33122 -25.58831 -23.94760 -22.96087 -22.05668 -21.32082 -21.21663 -20.03500 -18.86962 -18.12737 -17.27121 -16.91524 -16.64581 -16.12795 -15.81991 -15.57609 -15.23873 -14.45998 -14.30070 -14.25707 -14.04819 -13.93082 -13.56838 -13.40369 -13.17625 -12.84581 -12.76969 -12.70423 -12.07447 -12.01569 -11.98464 -11.89653 -11.84265 -11.81179 -11.61250 -11.40189 -11.30635 -10.76582 -10.70948 -10.62954 -10.12620 -8.89236 -7.78513 -5.22916 1.46147 1.47067 1.48257 1.57404 2.12098 2.48761 2.61194 3.31137 3.48360 3.59663 3.61907 3.71062 3.82334 3.90957 3.96085 4.06229 4.25963 4.42593 4.42829 4.50157 4.62419 4.66608 4.67360 4.73629 4.78579 4.82071 4.88820 4.98740 5.02247 5.04710 5.10662 5.17725 5.21306 5.29151 5.31951 5.41915 5.47323 5.48349 5.64584 5.81631 6.30889 6.52460 7.10354 7.20101 7.77925 8.41384 9.23598 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030894 B = 0.003313 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.116102 B = 8448.784435 C = 8810.950432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.629 5.629 10 C 0.152 3.848 11 C -0.123 4.123 12 C -0.092 4.092 13 H 0.098 0.902 14 C 0.143 3.857 15 N -0.711 5.711 16 C 0.548 3.452 17 O -0.591 6.591 18 C -0.188 4.188 19 C -0.116 4.116 20 C -0.134 4.134 21 H 0.099 0.901 22 C -0.090 4.090 23 C -0.121 4.121 24 C -0.084 4.084 25 C 0.139 3.861 26 H 0.247 0.753 27 H 0.071 0.929 28 H -0.008 1.008 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.413 0.587 34 H 0.089 0.911 35 H 0.130 0.870 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.029 0.971 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.024 -21.697 4.012 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.809 3.191 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.368 4.368 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.162 4.162 12 C -0.112 4.112 13 H 0.116 0.884 14 C 0.019 3.981 15 N -0.362 5.362 16 C 0.336 3.664 17 O -0.472 6.472 18 C -0.191 4.191 19 C -0.153 4.153 20 C -0.153 4.153 21 H 0.117 0.883 22 C -0.128 4.128 23 C -0.159 4.159 24 C -0.122 4.122 25 C 0.014 3.986 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.010 0.990 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.250 0.750 34 H 0.107 0.893 35 H 0.148 0.852 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 7.670 -21.691 3.261 23.237 hybrid contribution 0.098 1.561 0.019 1.564 sum 7.768 -20.130 3.280 21.824 Atomic orbital electron populations 1.70058 1.06197 1.24965 1.58656 1.25641 0.96671 1.01010 1.02734 0.84978 0.78089 0.79312 0.76758 1.19117 1.21895 1.21776 1.19491 0.91009 0.83869 1.42462 0.90244 1.44840 1.02845 1.00990 1.86812 1.21725 0.84063 0.94802 0.96684 1.22856 0.97813 0.95590 0.99950 1.22274 0.95743 0.93214 0.99923 0.88383 1.21206 0.90885 0.90671 0.95306 1.45918 1.40973 1.25746 1.23537 1.19991 0.81735 0.80439 0.84236 1.90662 1.60990 1.72420 1.23115 1.22501 0.95740 1.02916 0.97935 1.23587 0.91020 0.98488 1.02217 1.23860 1.02756 0.88647 1.00043 0.88317 1.22007 1.00708 0.96792 0.93251 1.22689 0.99314 0.94072 0.99780 1.22018 1.03364 0.96909 0.89904 1.21488 0.94692 0.84697 0.97726 0.94323 0.91131 0.99015 0.92087 0.89161 0.93211 0.90902 0.75030 0.89263 0.85224 0.90387 0.89205 0.88817 0.92320 0.88582 0.90964 0.95272 0.96401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.88 10.09 21.65 0.22 -56.66 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 3 Si 0.98 45.89 29.55 68.60 2.03 47.92 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.24 -13.54 10.27 84.03 0.86 -12.68 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.63 -32.52 3.39 -691.98 -2.35 -34.87 16 10 C 0.15 7.49 5.89 86.86 0.51 8.00 16 11 C -0.12 -4.48 6.53 31.99 0.21 -4.27 16 12 C -0.09 -2.94 2.96 -9.61 -0.03 -2.97 16 13 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 14 C 0.14 4.17 5.02 86.38 0.43 4.61 16 15 N -0.71 -18.01 5.30 -463.04 -2.45 -20.46 16 16 C 0.55 15.26 7.41 87.66 0.65 15.91 16 17 O -0.59 -21.53 16.79 -3.05 -0.05 -21.58 16 18 C -0.19 -3.73 2.60 -52.21 -0.14 -3.87 16 19 C -0.12 -1.97 10.00 31.44 0.31 -1.66 16 20 C -0.13 -2.45 6.64 -9.22 -0.06 -2.51 16 21 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 22 C -0.09 -1.10 6.64 31.67 0.21 -0.88 16 23 C -0.12 -1.46 6.91 31.89 0.22 -1.24 16 24 C -0.08 -1.18 6.18 31.67 0.20 -0.98 16 25 C 0.14 5.58 6.75 86.73 0.59 6.16 16 26 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.07 4.00 5.87 -2.39 -0.01 3.99 16 28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.06 2.25 8.05 -2.38 -0.02 2.23 16 30 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.05 1.67 7.93 -2.39 -0.02 1.65 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.41 8.57 7.99 -92.71 -0.74 7.83 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.13 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.03 7.61 -2.38 -0.02 1.01 16 42 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.02 0.74 7.68 -2.39 -0.02 0.73 16 Total: -1.00 -71.36 342.85 2.07 -69.29 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.25 Total: 16.17 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 4.43 Total: 0.20 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -4.58 Total: -111.99 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.05 Total: -21.58 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -71.36 2.07 -69.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028699584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.973 kcal (2) G-P(sol) polarization free energy of solvation -71.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds