Wall clock time and date at job start Tue Mar 31 2020 00:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99841 * 2 1 4 4 H 1.48499 * 109.47612 * 274.99264 * 3 2 1 5 5 H 1.48503 * 109.47189 * 34.99105 * 3 2 1 6 6 H 1.48499 * 109.47111 * 154.98960 * 3 2 1 7 7 C 1.38809 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00044 * 185.06014 * 7 2 1 9 9 N 1.36936 * 119.99872 * 5.06544 * 7 2 1 10 10 C 1.47583 * 134.49037 * 173.48482 * 9 7 2 11 11 C 1.53947 * 86.11441 * 155.35629 * 10 9 7 12 12 N 1.46499 * 113.74097 * 137.95370 * 11 10 9 13 13 C 1.34779 * 120.00246 * 154.99474 * 12 11 10 14 14 O 1.21284 * 119.99808 * 0.02562 * 13 12 11 15 15 C 1.50695 * 120.00180 * 179.97438 * 13 12 11 16 16 H 1.08998 * 109.48218 * 59.99068 * 15 13 12 17 17 C 1.52944 * 109.47728 * 299.97985 * 15 13 12 18 18 C 1.52961 * 109.92800 * 177.07244 * 17 15 13 19 19 C 1.53185 * 109.44227 * 62.80542 * 18 17 15 20 20 C 1.53154 * 108.97718 * 303.61860 * 19 18 17 21 21 C 1.52849 * 117.67597 * 268.44682 * 20 19 18 22 22 C 1.52811 * 117.74405 * 199.56827 * 20 19 18 23 23 C 1.53146 * 115.01055 * 53.87690 * 20 19 18 24 24 C 1.47581 * 134.49600 * 353.47981 * 9 7 2 25 25 H 0.97005 * 120.00201 * 359.97438 * 1 2 3 26 26 H 1.08998 * 113.76827 * 41.05519 * 10 9 7 27 27 H 1.08995 * 113.76867 * 269.65549 * 10 9 7 28 28 H 1.09004 * 113.74113 * 269.14900 * 11 10 9 29 29 H 0.96995 * 120.00060 * 334.99748 * 12 11 10 30 30 H 1.09003 * 109.41363 * 297.12733 * 17 15 13 31 31 H 1.09004 * 109.41458 * 56.98112 * 17 15 13 32 32 H 1.09004 * 109.37965 * 302.87535 * 18 17 15 33 33 H 1.09001 * 109.57969 * 182.85681 * 18 17 15 34 34 H 1.08999 * 109.56646 * 183.73933 * 19 18 17 35 35 H 1.08999 * 109.56343 * 63.49597 * 19 18 17 36 36 H 1.08998 * 117.50720 * 359.72843 * 21 20 19 37 37 H 1.08996 * 117.50390 * 144.78733 * 21 20 19 38 38 H 1.08998 * 117.49848 * 215.10505 * 22 20 19 39 39 H 1.08996 * 117.50783 * 0.12286 * 22 20 19 40 40 H 1.08998 * 109.56626 * 65.87628 * 23 20 19 41 41 H 1.08997 * 109.56829 * 186.23030 * 23 20 19 42 42 H 1.08994 * 113.76698 * 90.33952 * 24 9 7 43 43 H 1.09007 * 113.76723 * 318.94180 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1075 -1.3947 5 1 1.5043 2.6199 0.8029 6 1 3.5964 1.4121 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0871 -1.2040 0.0820 9 7 1.3295 -2.3856 -0.1058 10 6 1.7286 -3.7983 -0.2583 11 6 0.3709 -4.1419 0.3808 12 7 -0.3174 -5.2631 -0.2636 13 6 -1.2105 -5.9950 0.4315 14 8 -1.4446 -5.7251 1.5906 15 6 -1.9190 -7.1479 -0.2316 16 1 -1.1852 -7.8795 -0.5697 17 6 -2.7169 -6.6342 -1.4310 18 6 -3.3818 -7.8060 -2.1553 19 6 -4.3796 -8.4874 -1.2136 20 6 -3.6470 -8.9196 0.0600 21 6 -3.0577 -10.3295 0.0963 22 6 -4.3001 -9.9964 0.9256 23 6 -2.8721 -7.8062 0.7707 24 6 -0.0977 -2.7609 -0.1121 25 1 -0.4851 0.8401 0.0004 26 1 2.5859 -4.0810 0.3526 27 1 1.8196 -4.1195 -1.2959 28 1 0.4075 -4.2332 1.4664 29 1 -0.1305 -5.4787 -1.1907 30 1 -3.4843 -5.9414 -1.0858 31 1 -2.0461 -6.1187 -2.1184 32 1 -2.6193 -8.5238 -2.4579 33 1 -3.9067 -7.4396 -3.0375 34 1 -4.8058 -9.3623 -1.7045 35 1 -5.1757 -7.7883 -0.9575 36 1 -3.1942 -10.9550 -0.7858 37 1 -2.1181 -10.4687 0.6309 38 1 -4.1776 -9.9167 2.0057 39 1 -5.2539 -10.4027 0.5893 40 1 -3.5706 -7.0621 1.1532 41 1 -2.2990 -8.2295 1.5956 42 1 -0.5432 -2.7774 -1.1068 43 1 -0.6987 -2.2154 0.6156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030305674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:23 Heat of formation + Delta-G solvation = 21.764454 kcal Electronic energy + Delta-G solvation = -21801.889271 eV Core-core repulsion = 18655.621890 eV Total energy + Delta-G solvation = -3146.267381 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.25198 -38.82866 -37.43479 -34.90272 -33.41815 -31.84189 -31.11898 -27.82658 -27.26237 -24.81975 -24.33006 -22.72167 -22.56877 -21.71152 -19.89296 -19.48858 -18.77825 -16.78142 -16.69327 -15.96257 -15.45376 -15.15340 -14.87581 -14.64035 -14.31423 -13.84164 -13.66108 -13.42053 -13.00917 -12.74415 -12.57163 -12.10990 -11.80972 -11.69635 -11.46868 -11.42978 -11.29499 -11.22963 -11.04411 -10.88063 -10.78642 -10.60503 -10.44453 -10.10365 -10.03146 -9.73569 -9.54407 -9.28450 -8.80767 -8.39175 -6.91205 -5.79424 -3.12484 2.96303 3.38456 3.42157 3.46237 3.48071 3.65142 4.40406 4.47458 4.49654 4.65617 4.72765 4.91278 4.95919 5.06818 5.10122 5.19832 5.27098 5.43594 5.44723 5.46174 5.47728 5.60662 5.66470 5.71938 5.78011 5.86025 5.94838 5.98687 6.00246 6.04240 6.09945 6.22393 6.23852 6.28882 6.43124 6.57441 6.80435 7.23613 7.37128 7.56016 7.92888 7.95992 8.61068 9.02036 9.68119 10.56014 11.37825 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041534 B = 0.003207 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.984466 B = 8727.908563 C = 8863.454984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.607 5.607 10 C 0.111 3.889 11 C 0.090 3.910 12 N -0.715 5.715 13 C 0.513 3.487 14 O -0.545 6.545 15 C -0.102 4.102 16 H 0.094 0.906 17 C -0.111 4.111 18 C -0.114 4.114 19 C -0.082 4.082 20 C -0.121 4.121 21 C -0.176 4.176 22 C -0.176 4.176 23 C -0.060 4.060 24 C 0.157 3.843 25 H 0.255 0.745 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.110 0.890 29 H 0.396 0.604 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.029 0.971 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.560 -20.413 -4.196 22.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.354 4.354 8 H 0.100 0.900 9 N -0.334 5.334 10 C -0.016 4.016 11 C -0.015 4.015 12 N -0.365 5.365 13 C 0.299 3.701 14 O -0.422 6.422 15 C -0.123 4.123 16 H 0.112 0.888 17 C -0.149 4.149 18 C -0.151 4.151 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.213 4.213 22 C -0.213 4.213 23 C -0.097 4.097 24 C 0.031 3.969 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.128 0.872 29 H 0.229 0.771 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.047 0.953 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.678 -19.834 -3.315 21.525 hybrid contribution 0.593 0.831 -0.639 1.204 sum -7.085 -19.003 -3.953 20.663 Atomic orbital electron populations 1.69851 1.05091 1.25509 1.55805 1.24852 0.95694 0.97655 1.02044 0.86097 0.78746 0.83419 0.77498 1.21578 1.21628 1.20479 1.18989 0.90742 0.81721 1.43969 0.90029 1.45662 1.02459 1.00566 1.84665 1.22885 0.94831 0.86780 0.97081 1.23894 0.93305 0.85538 0.98742 1.46159 1.42549 1.32572 1.15254 1.20599 0.79472 0.83259 0.86781 1.90688 1.64083 1.70155 1.17284 1.21305 0.98091 0.96049 0.96890 0.88830 1.21498 0.99665 0.98060 0.95698 1.21504 0.98548 0.97295 0.97755 1.21163 0.97339 1.00118 0.93364 1.21520 1.02169 0.90234 0.98169 1.23029 0.97656 0.98205 1.02421 1.22975 0.96958 1.03167 0.98191 1.20919 0.96888 0.95956 0.95973 1.22600 0.88054 0.88130 0.98120 0.93529 0.93361 0.94773 0.87223 0.77067 0.91139 0.91269 0.91761 0.91548 0.91978 0.91369 0.89048 0.88900 0.88804 0.88986 0.90536 0.91262 0.95273 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.60 11.51 55.49 0.64 -26.97 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 22.27 29.56 -169.99 -5.02 17.24 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.43 10.70 -15.06 -0.16 -6.59 16 8 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 9 N -0.61 -15.74 3.70 -178.10 -0.66 -16.40 16 10 C 0.11 2.25 8.69 -2.97 -0.03 2.22 16 11 C 0.09 1.78 4.43 -70.15 -0.31 1.47 16 12 N -0.72 -11.04 5.24 -55.35 -0.29 -11.33 16 13 C 0.51 8.03 7.15 -10.99 -0.08 7.95 16 14 O -0.54 -10.85 15.56 5.55 0.09 -10.76 16 15 C -0.10 -1.15 2.53 -91.71 -0.23 -1.38 16 16 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 17 C -0.11 -1.11 5.02 -26.78 -0.13 -1.24 16 18 C -0.11 -0.91 5.94 -26.66 -0.16 -1.07 16 19 C -0.08 -0.68 5.67 -26.56 -0.15 -0.83 16 20 C -0.12 -1.10 1.98 -154.53 -0.31 -1.41 16 21 C -0.18 -1.43 9.93 -26.79 -0.27 -1.69 16 22 C -0.18 -1.46 9.99 -26.81 -0.27 -1.73 16 23 C -0.06 -0.68 4.27 -26.56 -0.11 -0.79 16 24 C 0.16 3.81 7.23 -2.98 -0.02 3.78 16 25 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.03 0.64 8.12 -51.93 -0.42 0.21 16 28 H 0.11 2.37 7.46 -51.93 -0.39 1.98 16 29 H 0.40 4.96 8.11 -40.82 -0.33 4.63 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.45 8.09 -51.93 -0.42 0.02 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.00 8.02 -51.93 -0.42 0.58 16 41 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 1.97 7.36 -51.93 -0.38 1.59 16 LS Contribution 344.34 15.07 5.19 5.19 Total: -1.00 -32.67 344.34 -9.74 -42.42 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.36 Total: 2.18 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.32 Total: -1.57 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.31 Total: -54.70 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.67 -9.74 -42.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030305674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.183 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds