Wall clock time and date at job start Tue Mar 31 2020 00:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99841 * 2 1 4 4 H 1.48499 * 109.47612 * 274.99264 * 3 2 1 5 5 H 1.48503 * 109.47189 * 34.99105 * 3 2 1 6 6 H 1.48499 * 109.47111 * 154.98960 * 3 2 1 7 7 C 1.38809 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00044 * 185.06014 * 7 2 1 9 9 N 1.36936 * 119.99872 * 5.06544 * 7 2 1 10 10 C 1.47583 * 134.49037 * 173.48482 * 9 7 2 11 11 C 1.53947 * 86.11441 * 155.35629 * 10 9 7 12 12 N 1.46499 * 113.74097 * 137.95370 * 11 10 9 13 13 C 1.34779 * 120.00246 * 154.99474 * 12 11 10 14 14 O 1.21284 * 119.99808 * 0.02562 * 13 12 11 15 15 C 1.50695 * 120.00180 * 179.97438 * 13 12 11 16 16 H 1.08998 * 109.48218 * 59.99068 * 15 13 12 17 17 C 1.52944 * 109.47728 * 299.97985 * 15 13 12 18 18 C 1.52961 * 109.92800 * 177.07244 * 17 15 13 19 19 C 1.53185 * 109.44227 * 62.80542 * 18 17 15 20 20 C 1.53154 * 108.97718 * 303.61860 * 19 18 17 21 21 C 1.52849 * 117.67597 * 268.44682 * 20 19 18 22 22 C 1.52811 * 117.74405 * 199.56827 * 20 19 18 23 23 C 1.53146 * 115.01055 * 53.87690 * 20 19 18 24 24 C 1.47581 * 134.49600 * 353.47981 * 9 7 2 25 25 H 0.97005 * 120.00201 * 359.97438 * 1 2 3 26 26 H 1.08998 * 113.76827 * 41.05519 * 10 9 7 27 27 H 1.08995 * 113.76867 * 269.65549 * 10 9 7 28 28 H 1.09004 * 113.74113 * 269.14900 * 11 10 9 29 29 H 0.96995 * 120.00060 * 334.99748 * 12 11 10 30 30 H 1.09003 * 109.41363 * 297.12733 * 17 15 13 31 31 H 1.09004 * 109.41458 * 56.98112 * 17 15 13 32 32 H 1.09004 * 109.37965 * 302.87535 * 18 17 15 33 33 H 1.09001 * 109.57969 * 182.85681 * 18 17 15 34 34 H 1.08999 * 109.56646 * 183.73933 * 19 18 17 35 35 H 1.08999 * 109.56343 * 63.49597 * 19 18 17 36 36 H 1.08998 * 117.50720 * 359.72843 * 21 20 19 37 37 H 1.08996 * 117.50390 * 144.78733 * 21 20 19 38 38 H 1.08998 * 117.49848 * 215.10505 * 22 20 19 39 39 H 1.08996 * 117.50783 * 0.12286 * 22 20 19 40 40 H 1.08998 * 109.56626 * 65.87628 * 23 20 19 41 41 H 1.08997 * 109.56829 * 186.23030 * 23 20 19 42 42 H 1.08994 * 113.76698 * 90.33952 * 24 9 7 43 43 H 1.09007 * 113.76723 * 318.94180 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1075 -1.3947 5 1 1.5043 2.6199 0.8029 6 1 3.5964 1.4121 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0871 -1.2040 0.0820 9 7 1.3295 -2.3856 -0.1058 10 6 1.7286 -3.7983 -0.2583 11 6 0.3709 -4.1419 0.3808 12 7 -0.3174 -5.2631 -0.2636 13 6 -1.2105 -5.9950 0.4315 14 8 -1.4446 -5.7251 1.5906 15 6 -1.9190 -7.1479 -0.2316 16 1 -1.1852 -7.8795 -0.5697 17 6 -2.7169 -6.6342 -1.4310 18 6 -3.3818 -7.8060 -2.1553 19 6 -4.3796 -8.4874 -1.2136 20 6 -3.6470 -8.9196 0.0600 21 6 -3.0577 -10.3295 0.0963 22 6 -4.3001 -9.9964 0.9256 23 6 -2.8721 -7.8062 0.7707 24 6 -0.0977 -2.7609 -0.1121 25 1 -0.4851 0.8401 0.0004 26 1 2.5859 -4.0810 0.3526 27 1 1.8196 -4.1195 -1.2959 28 1 0.4075 -4.2332 1.4664 29 1 -0.1305 -5.4787 -1.1907 30 1 -3.4843 -5.9414 -1.0858 31 1 -2.0461 -6.1187 -2.1184 32 1 -2.6193 -8.5238 -2.4579 33 1 -3.9067 -7.4396 -3.0375 34 1 -4.8058 -9.3623 -1.7045 35 1 -5.1757 -7.7883 -0.9575 36 1 -3.1942 -10.9550 -0.7858 37 1 -2.1181 -10.4687 0.6309 38 1 -4.1776 -9.9167 2.0057 39 1 -5.2539 -10.4027 0.5893 40 1 -3.5706 -7.0621 1.1532 41 1 -2.2990 -8.2295 1.5956 42 1 -0.5432 -2.7774 -1.1068 43 1 -0.6987 -2.2154 0.6156 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030305674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:22 Heat of formation + Delta-G solvation = 1.419802 kcal Electronic energy + Delta-G solvation = -21802.771481 eV Core-core repulsion = 18655.621890 eV Total energy + Delta-G solvation = -3147.149591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.40476 -40.02765 -38.96223 -35.76372 -35.05848 -33.70335 -32.02450 -29.49436 -28.34031 -26.63601 -25.72793 -24.09043 -23.35307 -22.50750 -21.37238 -21.00420 -19.55027 -18.78346 -17.88703 -17.38937 -16.95255 -16.34402 -15.98565 -15.82390 -15.72226 -15.15346 -14.83953 -14.62495 -14.25388 -13.90711 -13.63614 -13.46784 -13.31256 -13.22641 -12.88926 -12.73710 -12.61419 -12.35242 -12.30062 -12.08551 -12.02183 -11.95173 -11.77124 -11.53358 -11.44809 -10.91003 -10.79529 -10.63579 -10.37761 -9.93193 -8.98173 -7.95055 -5.29795 1.44643 1.46952 1.56210 1.67042 2.18681 2.49422 2.91226 3.22845 3.38147 3.62994 3.69952 3.83220 3.89837 3.97207 4.12556 4.23019 4.25475 4.28756 4.41071 4.49490 4.51301 4.61046 4.71113 4.73914 4.85490 4.89396 4.95159 5.09129 5.10230 5.13170 5.18872 5.20055 5.22090 5.25784 5.31912 5.34601 5.46038 5.48262 5.53982 5.70812 5.87382 6.64685 6.86285 7.33660 7.55978 8.49877 9.22420 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041534 B = 0.003207 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.984466 B = 8727.908563 C = 8863.454984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.068 4.068 3 Si 0.983 3.017 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.237 4.237 8 H 0.090 0.910 9 N -0.639 5.639 10 C 0.122 3.878 11 C 0.118 3.882 12 N -0.702 5.702 13 C 0.510 3.490 14 O -0.592 6.592 15 C -0.088 4.088 16 H 0.122 0.878 17 C -0.111 4.111 18 C -0.107 4.107 19 C -0.082 4.082 20 C -0.129 4.129 21 C -0.164 4.164 22 C -0.180 4.180 23 C -0.058 4.058 24 C 0.156 3.844 25 H 0.249 0.751 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.415 0.585 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.028 0.972 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.648 -22.553 -6.071 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.810 3.190 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.365 4.365 8 H 0.108 0.892 9 N -0.366 5.366 10 C -0.003 4.003 11 C 0.011 3.989 12 N -0.353 5.353 13 C 0.298 3.702 14 O -0.472 6.472 15 C -0.109 4.109 16 H 0.140 0.860 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.119 4.119 20 C -0.129 4.129 21 C -0.201 4.201 22 C -0.217 4.217 23 C -0.096 4.096 24 C 0.029 3.971 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.252 0.748 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.123 0.877 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.741 -22.033 -5.228 23.626 hybrid contribution 0.287 1.432 0.000 1.461 sum -6.453 -20.600 -5.228 22.211 Atomic orbital electron populations 1.70056 1.06725 1.25778 1.57664 1.25753 0.96564 1.01267 1.02575 0.85001 0.77873 0.78724 0.77382 1.21114 1.22322 1.18841 1.19439 0.91415 0.82983 1.42705 0.89183 1.45990 1.03349 1.02161 1.85115 1.23019 0.95105 0.83318 0.98902 1.23151 0.93186 0.84841 0.97701 1.45911 1.42157 1.31161 1.16092 1.21461 0.78688 0.83782 0.86220 1.90675 1.65333 1.71557 1.19643 1.21298 0.98306 0.94434 0.96910 0.86032 1.21525 0.99272 0.98835 0.95233 1.21486 0.98792 0.96529 0.97652 1.21180 0.97099 1.00661 0.92947 1.21437 1.02840 0.89899 0.98730 1.23092 0.97314 0.96966 1.02726 1.23049 0.97932 1.02777 0.97902 1.20843 0.96523 0.96231 0.96032 1.22484 0.87273 0.90426 0.96883 0.94230 0.91855 0.91530 0.89315 0.74804 0.93121 0.90330 0.90204 0.90364 0.90165 0.92310 0.87307 0.89036 0.89565 0.87719 0.93202 0.92473 0.95467 0.95573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.36 11.51 21.65 0.25 -59.11 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 3 Si 0.98 46.27 29.56 68.60 2.03 48.29 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.24 -13.48 10.70 84.03 0.90 -12.58 16 8 H 0.09 4.82 7.83 -2.91 -0.02 4.79 16 9 N -0.64 -33.26 3.70 -717.39 -2.65 -35.92 16 10 C 0.12 4.71 8.69 86.48 0.75 5.46 16 11 C 0.12 4.64 4.43 46.75 0.21 4.85 16 12 N -0.70 -20.87 5.24 -447.40 -2.34 -23.21 16 13 C 0.51 15.83 7.15 87.66 0.63 16.45 16 14 O -0.59 -24.35 15.56 -3.04 -0.05 -24.40 16 15 C -0.09 -1.87 2.53 -11.50 -0.03 -1.90 16 16 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 17 C -0.11 -2.01 5.02 30.56 0.15 -1.85 16 18 C -0.11 -1.39 5.94 30.64 0.18 -1.21 16 19 C -0.08 -1.14 5.67 30.71 0.17 -0.96 16 20 C -0.13 -2.12 1.98 -52.19 -0.10 -2.23 16 21 C -0.16 -2.20 9.93 30.56 0.30 -1.90 16 22 C -0.18 -2.70 9.99 30.54 0.31 -2.39 16 23 C -0.06 -1.32 4.27 30.70 0.13 -1.19 16 24 C 0.16 7.77 7.23 86.48 0.62 8.40 16 25 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 26 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 28 H 0.09 3.93 7.46 -2.39 -0.02 3.91 16 29 H 0.41 9.30 8.11 -92.71 -0.75 8.54 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.28 7.48 -2.38 -0.02 1.26 16 32 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.05 1.37 8.02 -2.39 -0.02 1.35 16 41 H 0.06 1.40 8.09 -2.39 -0.02 1.38 16 42 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.03 1.51 7.36 -2.38 -0.02 1.50 16 Total: -1.00 -73.48 344.34 2.16 -71.32 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.23 Total: 17.59 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 4.69 Total: 5.44 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -4.75 Total: -118.24 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.05 Total: -24.40 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -73.48 2.16 -71.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030305674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.736 kcal (2) G-P(sol) polarization free energy of solvation -73.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds