Wall clock time and date at job start Tue Mar 31 2020 00:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48495 * 109.47406 * 274.99256 * 3 2 1 5 5 H 1.48505 * 109.46984 * 34.98912 * 3 2 1 6 6 H 1.48499 * 109.47562 * 154.98557 * 3 2 1 7 7 C 1.38816 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00060 * 185.06325 * 7 2 1 9 9 N 1.36934 * 119.99694 * 5.06824 * 7 2 1 10 10 C 1.47583 * 134.49136 * 173.48100 * 9 7 2 11 11 C 1.53943 * 86.11936 * 155.35362 * 10 9 7 12 12 N 1.46495 * 113.74364 * 137.94724 * 11 10 9 13 13 C 1.34781 * 120.00124 * 156.92197 * 12 11 10 14 14 O 1.21281 * 119.99805 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00214 * 180.02562 * 13 12 11 16 16 H 1.09007 * 109.47458 * 299.99490 * 15 13 12 17 17 C 1.52939 * 109.47496 * 60.00106 * 15 13 12 18 18 C 1.52947 * 109.82514 * 182.97574 * 17 15 13 19 19 C 1.53183 * 109.45022 * 297.01917 * 18 17 15 20 20 C 1.53146 * 108.88149 * 56.56719 * 19 18 17 21 21 C 1.52814 * 117.75089 * 160.37712 * 20 19 18 22 22 C 1.52842 * 117.68235 * 91.49315 * 20 19 18 23 23 C 1.53152 * 115.01116 * 306.05845 * 20 19 18 24 24 C 1.47812 * 134.45603 * 353.34121 * 9 7 2 25 25 H 0.96998 * 119.99998 * 359.97438 * 1 2 3 26 26 H 1.08996 * 113.77005 * 41.04760 * 10 9 7 27 27 H 1.09001 * 113.76704 * 269.65753 * 10 9 7 28 28 H 1.09000 * 113.74019 * 269.15558 * 11 10 9 29 29 H 0.97003 * 120.00247 * 336.93227 * 12 11 10 30 30 H 1.08996 * 109.41037 * 62.86635 * 17 15 13 31 31 H 1.08996 * 109.41314 * 303.08347 * 17 15 13 32 32 H 1.08995 * 109.47288 * 57.01260 * 18 17 15 33 33 H 1.09002 * 109.47212 * 177.02519 * 18 17 15 34 34 H 1.09001 * 109.56736 * 176.38629 * 19 18 17 35 35 H 1.09001 * 109.56943 * 296.62499 * 19 18 17 36 36 H 1.08999 * 117.49925 * 359.84731 * 21 20 19 37 37 H 1.08992 * 117.50420 * 144.88550 * 21 20 19 38 38 H 1.09000 * 117.51096 * 215.21639 * 22 20 19 39 39 H 1.09000 * 117.50419 * 0.27029 * 22 20 19 40 40 H 1.08992 * 109.57205 * 173.75840 * 23 20 19 41 41 H 1.09003 * 109.56795 * 294.00571 * 23 20 19 42 42 H 1.09004 * 113.76904 * 90.38647 * 24 9 7 43 43 H 1.08995 * 113.83695 * 318.91424 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5043 2.6199 0.8029 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0871 -1.2039 0.0831 9 7 1.3296 -2.3858 -0.1037 10 6 1.7287 -3.7985 -0.2551 11 6 0.3711 -4.1417 0.3844 12 7 -0.3174 -5.2633 -0.2591 13 6 -1.2388 -5.9704 0.4248 14 8 -1.4982 -5.6778 1.5728 15 6 -1.9465 -7.1245 -0.2370 16 1 -2.4872 -6.7653 -1.1128 17 6 -0.9199 -8.1736 -0.6665 18 6 -1.6218 -9.3143 -1.4051 19 6 -2.5993 -10.0123 -0.4543 20 6 -3.5827 -8.9747 0.0949 21 6 -4.8991 -9.4827 0.6815 22 6 -4.8896 -8.7614 -0.6682 23 6 -2.9345 -7.7521 0.7511 24 6 -0.1001 -2.7609 -0.1072 25 1 -0.4850 0.8400 0.0004 26 1 2.5860 -4.0807 0.3559 27 1 1.8197 -4.1206 -1.2924 28 1 0.4077 -4.2320 1.4701 29 1 -0.1101 -5.4972 -1.1774 30 1 -0.4155 -8.5690 0.2151 31 1 -0.1853 -7.7125 -1.3266 32 1 -2.1687 -8.9127 -2.2580 33 1 -0.8795 -10.0320 -1.7544 34 1 -3.1470 -10.7837 -0.9957 35 1 -2.0470 -10.4660 0.3686 36 1 -5.0705 -10.5591 0.6757 37 1 -5.3098 -8.9456 1.5363 38 1 -5.2941 -7.7498 -0.7012 39 1 -5.0547 -9.3633 -1.5618 40 1 -3.7044 -7.0250 1.0091 41 1 -2.4056 -8.0594 1.6533 42 1 -0.5476 -2.7776 -1.1010 43 1 -0.7002 -2.2164 0.6219 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030305675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:26 Heat of formation + Delta-G solvation = 21.808157 kcal Electronic energy + Delta-G solvation = -21767.747495 eV Core-core repulsion = 18621.482010 eV Total energy + Delta-G solvation = -3146.265485 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.25769 -38.82614 -37.41943 -34.91940 -33.41427 -31.84077 -31.12803 -27.83954 -27.26702 -24.82655 -24.33592 -22.71279 -22.57257 -21.72896 -19.89852 -19.48057 -18.78531 -16.77180 -16.70649 -15.94016 -15.50351 -15.17167 -14.94704 -14.51821 -14.33831 -13.85726 -13.66866 -13.45829 -13.02155 -12.75176 -12.54760 -12.12803 -11.81529 -11.67929 -11.47848 -11.43332 -11.31517 -11.23414 -11.07963 -10.87830 -10.77819 -10.63097 -10.43759 -10.10753 -10.02780 -9.74104 -9.53936 -9.28544 -8.80678 -8.39476 -6.91099 -5.79203 -3.12249 2.97025 3.38536 3.42149 3.46347 3.47996 3.65313 4.39806 4.46981 4.48822 4.64642 4.72684 4.89363 4.93879 5.05772 5.10020 5.17114 5.25364 5.41585 5.42926 5.47404 5.49267 5.60831 5.65429 5.73071 5.74969 5.81489 5.95236 5.96462 5.99282 6.01629 6.07882 6.21545 6.24063 6.26765 6.43231 6.57526 6.80624 7.23836 7.37162 7.55967 7.92856 7.95913 8.61349 9.01948 9.68292 10.56078 11.38101 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040399 B = 0.003209 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.926228 B = 8724.001457 C = 9065.494988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.607 5.607 10 C 0.112 3.888 11 C 0.091 3.909 12 N -0.715 5.715 13 C 0.513 3.487 14 O -0.544 6.544 15 C -0.103 4.103 16 H 0.095 0.905 17 C -0.110 4.110 18 C -0.114 4.114 19 C -0.082 4.082 20 C -0.122 4.122 21 C -0.176 4.176 22 C -0.176 4.176 23 C -0.059 4.059 24 C 0.157 3.843 25 H 0.255 0.745 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.109 0.891 29 H 0.396 0.604 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.030 0.970 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.437 -21.397 -3.702 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.354 4.354 8 H 0.100 0.900 9 N -0.334 5.334 10 C -0.015 4.015 11 C -0.014 4.014 12 N -0.366 5.366 13 C 0.299 3.701 14 O -0.422 6.422 15 C -0.125 4.125 16 H 0.113 0.887 17 C -0.147 4.147 18 C -0.152 4.152 19 C -0.119 4.119 20 C -0.122 4.122 21 C -0.213 4.213 22 C -0.213 4.213 23 C -0.097 4.097 24 C 0.030 3.970 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.127 0.873 29 H 0.229 0.771 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.573 -20.802 -2.829 21.998 hybrid contribution 0.472 0.930 -0.686 1.248 sum -6.100 -19.872 -3.515 21.082 Atomic orbital electron populations 1.69849 1.05097 1.25510 1.55802 1.24856 0.95691 0.97658 1.02049 0.86097 0.78742 0.83422 0.77496 1.21581 1.21631 1.20477 1.18991 0.90737 0.81723 1.43978 0.90027 1.45711 1.02434 1.00536 1.84716 1.22866 0.94760 0.86777 0.97062 1.23882 0.93317 0.85533 0.98690 1.46163 1.40905 1.33094 1.16403 1.20587 0.79688 0.83170 0.86649 1.90689 1.64196 1.69428 1.17850 1.21318 0.97126 0.94070 0.99956 0.88659 1.21482 0.97013 0.95508 1.00744 1.21505 0.98141 0.97329 0.98193 1.21153 0.96216 0.95886 0.98648 1.21517 0.89010 0.98471 1.03204 1.22976 1.00787 1.00258 0.97271 1.23037 1.00996 1.01881 0.95350 1.20915 0.97603 0.94197 0.97004 1.22650 0.88016 0.88146 0.98139 0.93528 0.93349 0.94778 0.87314 0.77078 0.91346 0.91357 0.91639 0.91642 0.91968 0.91456 0.89014 0.88777 0.88782 0.89035 0.91133 0.90666 0.95244 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.68 11.51 55.49 0.64 -27.04 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 22.29 29.56 -169.99 -5.02 17.27 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.44 10.70 -15.06 -0.16 -6.60 16 8 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 9 N -0.61 -15.77 3.70 -177.86 -0.66 -16.43 16 10 C 0.11 2.26 8.69 -2.97 -0.03 2.24 16 11 C 0.09 1.79 4.40 -70.14 -0.31 1.48 16 12 N -0.72 -11.04 5.25 -55.33 -0.29 -11.33 16 13 C 0.51 8.04 7.15 -10.99 -0.08 7.96 16 14 O -0.54 -10.86 15.58 5.56 0.09 -10.78 16 15 C -0.10 -1.17 2.53 -91.71 -0.23 -1.40 16 16 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.11 -1.00 5.03 -26.79 -0.13 -1.13 16 18 C -0.11 -0.86 5.93 -26.66 -0.16 -1.02 16 19 C -0.08 -0.64 5.67 -26.56 -0.15 -0.79 16 20 C -0.12 -1.11 1.97 -154.53 -0.31 -1.41 16 21 C -0.18 -1.48 9.99 -26.81 -0.27 -1.75 16 22 C -0.18 -1.48 9.93 -26.79 -0.27 -1.75 16 23 C -0.06 -0.68 4.27 -26.56 -0.11 -0.79 16 24 C 0.16 3.81 7.24 -2.83 -0.02 3.79 16 25 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.03 0.63 8.11 -51.93 -0.42 0.21 16 28 H 0.11 2.34 7.51 -51.93 -0.39 1.95 16 29 H 0.40 4.95 8.09 -40.82 -0.33 4.62 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.57 7.47 -51.93 -0.39 0.18 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 41 H 0.07 0.95 8.02 -51.93 -0.42 0.53 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.98 7.37 -51.93 -0.38 1.60 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -32.79 344.37 -9.74 -42.53 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.36 Total: 2.01 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.32 Total: -1.42 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.31 Total: -54.81 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.79 -9.74 -42.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030305675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.340 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds