Wall clock time and date at job start Tue Mar 31 2020 00:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48495 * 109.47406 * 274.99256 * 3 2 1 5 5 H 1.48505 * 109.46984 * 34.98912 * 3 2 1 6 6 H 1.48499 * 109.47562 * 154.98557 * 3 2 1 7 7 C 1.38816 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00060 * 185.06325 * 7 2 1 9 9 N 1.36934 * 119.99694 * 5.06824 * 7 2 1 10 10 C 1.47583 * 134.49136 * 173.48100 * 9 7 2 11 11 C 1.53943 * 86.11936 * 155.35362 * 10 9 7 12 12 N 1.46495 * 113.74364 * 137.94724 * 11 10 9 13 13 C 1.34781 * 120.00124 * 156.92197 * 12 11 10 14 14 O 1.21281 * 119.99805 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00214 * 180.02562 * 13 12 11 16 16 H 1.09007 * 109.47458 * 299.99490 * 15 13 12 17 17 C 1.52939 * 109.47496 * 60.00106 * 15 13 12 18 18 C 1.52947 * 109.82514 * 182.97574 * 17 15 13 19 19 C 1.53183 * 109.45022 * 297.01917 * 18 17 15 20 20 C 1.53146 * 108.88149 * 56.56719 * 19 18 17 21 21 C 1.52814 * 117.75089 * 160.37712 * 20 19 18 22 22 C 1.52842 * 117.68235 * 91.49315 * 20 19 18 23 23 C 1.53152 * 115.01116 * 306.05845 * 20 19 18 24 24 C 1.47812 * 134.45603 * 353.34121 * 9 7 2 25 25 H 0.96998 * 119.99998 * 359.97438 * 1 2 3 26 26 H 1.08996 * 113.77005 * 41.04760 * 10 9 7 27 27 H 1.09001 * 113.76704 * 269.65753 * 10 9 7 28 28 H 1.09000 * 113.74019 * 269.15558 * 11 10 9 29 29 H 0.97003 * 120.00247 * 336.93227 * 12 11 10 30 30 H 1.08996 * 109.41037 * 62.86635 * 17 15 13 31 31 H 1.08996 * 109.41314 * 303.08347 * 17 15 13 32 32 H 1.08995 * 109.47288 * 57.01260 * 18 17 15 33 33 H 1.09002 * 109.47212 * 177.02519 * 18 17 15 34 34 H 1.09001 * 109.56736 * 176.38629 * 19 18 17 35 35 H 1.09001 * 109.56943 * 296.62499 * 19 18 17 36 36 H 1.08999 * 117.49925 * 359.84731 * 21 20 19 37 37 H 1.08992 * 117.50420 * 144.88550 * 21 20 19 38 38 H 1.09000 * 117.51096 * 215.21639 * 22 20 19 39 39 H 1.09000 * 117.50419 * 0.27029 * 22 20 19 40 40 H 1.08992 * 109.57205 * 173.75840 * 23 20 19 41 41 H 1.09003 * 109.56795 * 294.00571 * 23 20 19 42 42 H 1.09004 * 113.76904 * 90.38647 * 24 9 7 43 43 H 1.08995 * 113.83695 * 318.91424 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5043 2.6199 0.8029 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 3.0871 -1.2039 0.0831 9 7 1.3296 -2.3858 -0.1037 10 6 1.7287 -3.7985 -0.2551 11 6 0.3711 -4.1417 0.3844 12 7 -0.3174 -5.2633 -0.2591 13 6 -1.2388 -5.9704 0.4248 14 8 -1.4982 -5.6778 1.5728 15 6 -1.9465 -7.1245 -0.2370 16 1 -2.4872 -6.7653 -1.1128 17 6 -0.9199 -8.1736 -0.6665 18 6 -1.6218 -9.3143 -1.4051 19 6 -2.5993 -10.0123 -0.4543 20 6 -3.5827 -8.9747 0.0949 21 6 -4.8991 -9.4827 0.6815 22 6 -4.8896 -8.7614 -0.6682 23 6 -2.9345 -7.7521 0.7511 24 6 -0.1001 -2.7609 -0.1072 25 1 -0.4850 0.8400 0.0004 26 1 2.5860 -4.0807 0.3559 27 1 1.8197 -4.1206 -1.2924 28 1 0.4077 -4.2320 1.4701 29 1 -0.1101 -5.4972 -1.1774 30 1 -0.4155 -8.5690 0.2151 31 1 -0.1853 -7.7125 -1.3266 32 1 -2.1687 -8.9127 -2.2580 33 1 -0.8795 -10.0320 -1.7544 34 1 -3.1470 -10.7837 -0.9957 35 1 -2.0470 -10.4660 0.3686 36 1 -5.0705 -10.5591 0.6757 37 1 -5.3098 -8.9456 1.5363 38 1 -5.2941 -7.7498 -0.7012 39 1 -5.0547 -9.3633 -1.5618 40 1 -3.7044 -7.0250 1.0091 41 1 -2.4056 -8.0594 1.6533 42 1 -0.5476 -2.7776 -1.1010 43 1 -0.7002 -2.2164 0.6219 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030305675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:26 Heat of formation + Delta-G solvation = 1.331385 kcal Electronic energy + Delta-G solvation = -21768.635435 eV Core-core repulsion = 18621.482010 eV Total energy + Delta-G solvation = -3147.153425 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.40245 -40.02225 -38.95341 -35.76203 -35.05649 -33.70009 -32.01496 -29.49651 -28.33458 -26.64375 -25.72403 -24.08690 -23.36491 -22.49473 -21.37439 -20.99838 -19.54501 -18.78416 -17.88455 -17.38754 -16.95906 -16.41030 -15.99689 -15.79343 -15.64873 -15.19097 -14.80549 -14.66219 -14.22841 -13.87947 -13.66877 -13.44046 -13.31550 -13.22343 -12.89186 -12.74201 -12.62313 -12.35612 -12.29476 -12.07946 -12.01623 -11.95161 -11.75990 -11.52880 -11.44820 -10.91121 -10.79634 -10.63309 -10.38674 -9.93338 -8.98326 -7.95123 -5.29823 1.44544 1.46912 1.56156 1.67765 2.18219 2.49328 2.90200 3.22565 3.37782 3.62789 3.69973 3.83366 3.89209 3.97280 4.13097 4.22084 4.25667 4.29302 4.41684 4.50527 4.51972 4.61731 4.73017 4.73976 4.84032 4.89551 4.94680 5.08306 5.10803 5.14330 5.19051 5.19775 5.21714 5.26699 5.32953 5.33358 5.45792 5.49197 5.55344 5.70770 5.86810 6.64742 6.85825 7.33815 7.55888 8.49742 9.22455 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040399 B = 0.003209 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.926228 B = 8724.001457 C = 9065.494988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.983 3.017 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.237 4.237 8 H 0.091 0.909 9 N -0.639 5.639 10 C 0.123 3.877 11 C 0.119 3.881 12 N -0.702 5.702 13 C 0.511 3.489 14 O -0.592 6.592 15 C -0.091 4.091 16 H 0.112 0.888 17 C -0.107 4.107 18 C -0.109 4.109 19 C -0.080 4.080 20 C -0.127 4.127 21 C -0.178 4.178 22 C -0.171 4.171 23 C -0.059 4.059 24 C 0.155 3.845 25 H 0.249 0.751 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.415 0.585 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.027 0.973 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.412 -23.530 -5.548 24.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.810 3.190 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.365 4.365 8 H 0.109 0.891 9 N -0.367 5.367 10 C -0.002 4.002 11 C 0.012 3.988 12 N -0.353 5.353 13 C 0.299 3.701 14 O -0.472 6.472 15 C -0.113 4.113 16 H 0.130 0.870 17 C -0.145 4.145 18 C -0.146 4.146 19 C -0.117 4.117 20 C -0.127 4.127 21 C -0.215 4.215 22 C -0.208 4.208 23 C -0.097 4.097 24 C 0.028 3.972 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.252 0.748 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.127 0.873 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.519 -22.995 -4.714 24.114 hybrid contribution 0.120 1.539 -0.060 1.544 sum -5.400 -21.457 -4.774 22.635 Atomic orbital electron populations 1.70056 1.06750 1.25771 1.57703 1.25761 0.96559 1.01293 1.02599 0.84998 0.77881 0.78708 0.77373 1.21130 1.22345 1.18799 1.19447 0.91425 0.82979 1.42661 0.89136 1.46041 1.03291 1.02165 1.85160 1.23003 0.95031 0.83255 0.98905 1.23139 0.93208 0.84773 0.97667 1.45912 1.40547 1.31657 1.17214 1.21447 0.78948 0.83643 0.86086 1.90676 1.65500 1.70802 1.20226 1.21317 0.97350 0.92817 0.99768 0.87025 1.21512 0.96590 0.95409 1.00947 1.21497 0.98374 0.96839 0.97937 1.21180 0.96025 0.95715 0.98815 1.21469 0.89561 0.97884 1.03758 1.23046 1.00188 1.01107 0.97139 1.23085 0.99995 1.01778 0.95905 1.20843 0.97067 0.94981 0.96769 1.22537 0.87287 0.90532 0.96850 0.94245 0.91760 0.91504 0.89377 0.74792 0.92153 0.89923 0.90834 0.89868 0.90319 0.91694 0.87455 0.89720 0.89617 0.87308 0.93243 0.92505 0.95539 0.95575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.56 11.51 21.65 0.25 -59.31 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.98 46.32 29.56 68.60 2.03 48.35 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.24 -13.46 10.70 84.04 0.90 -12.57 16 8 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 9 N -0.64 -33.29 3.70 -716.61 -2.65 -35.95 16 10 C 0.12 4.74 8.69 86.48 0.75 5.50 16 11 C 0.12 4.67 4.40 46.75 0.21 4.88 16 12 N -0.70 -20.85 5.25 -447.37 -2.35 -23.20 16 13 C 0.51 15.88 7.15 87.65 0.63 16.51 16 14 O -0.59 -24.43 15.58 -3.03 -0.05 -24.48 16 15 C -0.09 -1.95 2.53 -11.50 -0.03 -1.98 16 16 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 17 C -0.11 -1.66 5.03 30.56 0.15 -1.51 16 18 C -0.11 -1.24 5.93 30.64 0.18 -1.06 16 19 C -0.08 -1.01 5.67 30.70 0.17 -0.84 16 20 C -0.13 -2.10 1.97 -52.20 -0.10 -2.20 16 21 C -0.18 -2.75 9.99 30.54 0.31 -2.45 16 22 C -0.17 -2.55 9.93 30.55 0.30 -2.25 16 23 C -0.06 -1.34 4.27 30.71 0.13 -1.21 16 24 C 0.15 7.73 7.24 86.44 0.63 8.36 16 25 H 0.25 15.06 8.31 -92.71 -0.77 14.28 16 26 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.07 2.21 8.11 -2.39 -0.02 2.19 16 28 H 0.09 3.89 7.51 -2.39 -0.02 3.87 16 29 H 0.41 9.25 8.09 -92.71 -0.75 8.50 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.07 7.47 -2.39 -0.02 1.05 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.05 1.31 8.09 -2.39 -0.02 1.29 16 41 H 0.06 1.49 8.02 -2.39 -0.02 1.47 16 42 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.03 1.52 7.37 -2.39 -0.02 1.50 16 Total: -1.00 -73.74 344.37 2.16 -71.59 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.23 Total: 17.37 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 4.69 Total: 5.63 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -4.75 Total: -118.45 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.05 Total: -24.48 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -73.74 2.16 -71.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030305675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.918 kcal (2) G-P(sol) polarization free energy of solvation -73.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds