Wall clock time and date at job start Tue Mar 31 2020 00:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00196 * 2 1 4 4 H 1.48503 * 109.47145 * 274.99305 * 3 2 1 5 5 H 1.48503 * 109.46752 * 34.99278 * 3 2 1 6 6 H 1.48498 * 109.47185 * 154.99363 * 3 2 1 7 7 C 1.38818 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00084 * 185.05730 * 7 2 1 9 9 N 1.36933 * 119.99735 * 5.05990 * 7 2 1 10 10 C 1.47582 * 134.49026 * 173.48729 * 9 7 2 11 11 C 1.53944 * 86.11805 * 155.35857 * 10 9 7 12 12 N 1.46501 * 113.74402 * 137.95556 * 11 10 9 13 13 C 1.34771 * 120.00248 * 154.99991 * 12 11 10 14 14 O 1.21279 * 120.00030 * 359.71923 * 13 12 11 15 15 C 1.50702 * 119.99864 * 179.97438 * 13 12 11 16 16 H 1.08999 * 109.26499 * 59.22082 * 15 13 12 17 17 C 1.51388 * 109.26632 * 299.72018 * 15 13 12 18 18 C 1.49505 * 117.51798 * 165.92448 * 17 15 13 19 19 C 1.50513 * 113.04217 * 79.72101 * 18 17 15 20 20 C 1.31660 * 116.92699 * 275.42986 * 19 18 17 21 21 C 1.50807 * 118.08652 * 0.27495 * 20 19 18 22 22 C 1.52712 * 108.95824 * 104.85439 * 21 20 19 23 23 C 1.53856 * 109.26226 * 178.68360 * 15 13 12 24 24 C 1.47577 * 134.49456 * 353.48435 * 9 7 2 25 25 H 0.97003 * 119.99972 * 359.97438 * 1 2 3 26 26 H 1.08997 * 113.77104 * 41.05205 * 10 9 7 27 27 H 1.09002 * 113.86883 * 269.67233 * 10 9 7 28 28 H 1.09006 * 113.73931 * 269.14977 * 11 10 9 29 29 H 0.97007 * 119.99558 * 334.99585 * 12 11 10 30 30 H 1.08997 * 107.83660 * 287.96320 * 17 15 13 31 31 H 1.09001 * 107.83446 * 43.93405 * 17 15 13 32 32 H 1.09003 * 108.76663 * 200.63862 * 18 17 15 33 33 H 1.09002 * 108.76919 * 318.91738 * 18 17 15 34 34 H 1.08006 * 121.53822 * 95.40970 * 19 18 17 35 35 H 1.08007 * 120.95951 * 180.25204 * 20 19 18 36 36 H 1.08999 * 109.55726 * 224.70626 * 21 20 19 37 37 H 1.09005 * 109.55361 * 344.91053 * 21 20 19 38 38 H 1.08999 * 109.61712 * 61.91106 * 22 21 20 39 39 H 1.09001 * 109.62255 * 182.45901 * 22 21 20 40 40 H 1.08996 * 109.80542 * 345.70721 * 23 15 13 41 41 H 1.08996 * 109.80319 * 106.58270 * 23 15 13 42 42 H 1.09004 * 113.77217 * 90.34510 * 24 9 7 43 43 H 1.09001 * 113.76886 * 318.93519 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4120 0.5918 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2041 0.0819 9 7 1.3295 -2.3857 -0.1057 10 6 1.7285 -3.7983 -0.2581 11 6 0.3709 -4.1419 0.3810 12 7 -0.3176 -5.2632 -0.2633 13 6 -1.2106 -5.9949 0.4319 14 8 -1.4407 -5.7284 1.5925 15 6 -1.9192 -7.1479 -0.2312 16 1 -1.1816 -7.8707 -0.5799 17 6 -2.7122 -6.6334 -1.4137 18 6 -3.2239 -7.6405 -2.3930 19 6 -4.4742 -8.3352 -1.9246 20 6 -4.3173 -9.3773 -1.1353 21 6 -2.9127 -9.7814 -0.7638 22 6 -2.6389 -9.3565 0.6772 23 6 -2.8503 -7.8258 0.7889 24 6 -0.0978 -2.7609 -0.1120 25 1 -0.4850 0.8401 0.0004 26 1 2.5859 -4.0811 0.3527 27 1 1.8202 -4.1213 -1.2951 28 1 0.4074 -4.2332 1.4666 29 1 -0.1306 -5.4788 -1.1905 30 1 -3.5675 -6.0796 -1.0266 31 1 -2.0819 -5.9299 -1.9577 32 1 -3.4351 -7.1365 -3.3362 33 1 -2.4506 -8.3899 -2.5619 34 1 -5.4550 -7.9945 -2.2220 35 1 -5.1699 -9.9266 -0.7643 36 1 -2.8089 -10.8629 -0.8514 37 1 -2.2035 -9.2916 -1.4313 38 1 -3.3274 -9.8709 1.3475 39 1 -1.6113 -9.6044 0.9430 40 1 -2.6010 -7.4911 1.7958 41 1 -3.8876 -7.5788 0.5631 42 1 -0.5433 -2.7775 -1.1066 43 1 -0.6986 -2.2154 0.6157 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030511929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:24 Heat of formation + Delta-G solvation = 27.865122 kcal Electronic energy + Delta-G solvation = -21965.551344 eV Core-core repulsion = 18819.548508 eV Total energy + Delta-G solvation = -3146.002836 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.24263 -38.54943 -37.33945 -33.75817 -33.25028 -32.92605 -31.68990 -27.73948 -27.10246 -25.93663 -24.82388 -23.30459 -22.19261 -21.22175 -19.85284 -19.47399 -18.17254 -17.24875 -16.77492 -15.86734 -15.61000 -15.20787 -14.93724 -14.66050 -14.15453 -13.95439 -13.78975 -13.61757 -13.01178 -12.80591 -12.56910 -12.13290 -11.94148 -11.55624 -11.47584 -11.41684 -11.34116 -10.99852 -10.90947 -10.82381 -10.75808 -10.49496 -10.40103 -10.14710 -10.03750 -9.55258 -9.44152 -9.02057 -8.81082 -8.40215 -6.91654 -5.79784 -3.12855 2.06482 2.94672 3.38441 3.42569 3.46151 3.55520 4.44907 4.46340 4.60338 4.80457 4.86370 4.90025 4.98475 5.14329 5.19303 5.31051 5.32679 5.41501 5.46300 5.51167 5.60092 5.62265 5.74212 5.76467 5.88938 5.96580 6.02533 6.07637 6.11702 6.21583 6.26917 6.36746 6.43674 6.51842 6.56960 6.72471 6.80248 7.23157 7.36528 7.55604 7.92071 7.95522 8.60185 9.01678 9.67769 10.55590 11.37461 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037937 B = 0.003354 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.887047 B = 8345.220941 C = 8584.293280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.607 5.607 10 C 0.111 3.889 11 C 0.090 3.910 12 N -0.715 5.715 13 C 0.514 3.486 14 O -0.542 6.542 15 C -0.103 4.103 16 H 0.094 0.906 17 C -0.109 4.109 18 C -0.092 4.092 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.111 4.111 22 C -0.113 4.113 23 C -0.113 4.113 24 C 0.157 3.843 25 H 0.255 0.745 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.110 0.890 29 H 0.396 0.604 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.029 0.971 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.827 -20.233 -4.652 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.100 0.900 9 N -0.333 5.333 10 C -0.016 4.016 11 C -0.015 4.015 12 N -0.366 5.366 13 C 0.299 3.701 14 O -0.419 6.419 15 C -0.124 4.124 16 H 0.112 0.888 17 C -0.147 4.147 18 C -0.129 4.129 19 C -0.179 4.179 20 C -0.172 4.172 21 C -0.147 4.147 22 C -0.150 4.150 23 C -0.151 4.151 24 C 0.031 3.969 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.128 0.872 29 H 0.229 0.771 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.932 -19.643 -3.775 21.170 hybrid contribution 0.418 0.900 -0.715 1.223 sum -6.514 -18.743 -4.490 20.345 Atomic orbital electron populations 1.69851 1.05097 1.25516 1.55786 1.24856 0.95691 0.97659 1.02026 0.86097 0.78750 0.83412 0.77502 1.21574 1.21624 1.20470 1.18991 0.90745 0.81718 1.43997 0.90020 1.45658 1.02447 1.00567 1.84648 1.22880 0.94829 0.86781 0.97080 1.23904 0.93307 0.85514 0.98754 1.46155 1.42528 1.32616 1.15259 1.20569 0.79438 0.83237 0.86840 1.90660 1.64183 1.69857 1.17231 1.21238 0.98409 0.96159 0.96612 0.88826 1.20463 1.00408 0.98601 0.95227 1.20038 0.96069 0.98393 0.98431 1.23012 0.98456 0.96969 0.99488 1.23032 0.97697 0.98072 0.98399 1.21079 0.95159 1.00804 0.97685 1.21853 1.01379 0.96104 0.95707 1.22211 0.99026 0.93759 1.00117 1.22603 0.88065 0.88140 0.98114 0.93525 0.93361 0.94792 0.87194 0.77063 0.91543 0.91589 0.91330 0.90698 0.86981 0.87436 0.91887 0.89937 0.91880 0.91751 0.89458 0.91157 0.95293 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.59 11.51 55.49 0.64 -26.95 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 22.24 29.56 -169.99 -5.02 17.22 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.43 10.70 -15.06 -0.16 -6.59 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.80 16 9 N -0.61 -15.70 3.70 -178.08 -0.66 -16.36 16 10 C 0.11 2.24 8.69 -2.97 -0.03 2.21 16 11 C 0.09 1.77 4.44 -70.14 -0.31 1.46 16 12 N -0.72 -10.97 5.09 -55.33 -0.28 -11.25 16 13 C 0.51 7.99 7.13 -10.99 -0.08 7.91 16 14 O -0.54 -10.72 14.78 5.56 0.08 -10.64 16 15 C -0.10 -1.15 2.07 -92.14 -0.19 -1.34 16 16 H 0.09 0.88 6.57 -51.93 -0.34 0.54 16 17 C -0.11 -1.10 4.27 -29.27 -0.13 -1.23 16 18 C -0.09 -0.76 5.14 -29.70 -0.15 -0.92 16 19 C -0.16 -1.35 9.28 -36.27 -0.34 -1.68 16 20 C -0.15 -1.25 8.55 -36.13 -0.31 -1.56 16 21 C -0.11 -0.86 5.41 -27.98 -0.15 -1.01 16 22 C -0.11 -1.00 5.60 -25.86 -0.14 -1.14 16 23 C -0.11 -1.28 5.19 -25.27 -0.13 -1.41 16 24 C 0.16 3.80 7.23 -2.98 -0.02 3.77 16 25 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 28 H 0.11 2.36 7.46 -51.93 -0.39 1.97 16 29 H 0.40 4.92 8.00 -40.82 -0.33 4.59 16 30 H 0.07 0.77 7.71 -51.93 -0.40 0.36 16 31 H 0.07 0.66 7.01 -51.93 -0.36 0.30 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.56 5.61 -51.93 -0.29 0.27 16 34 H 0.11 0.86 8.06 -52.48 -0.42 0.44 16 35 H 0.11 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.63 3.57 -51.93 -0.19 0.44 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 1.21 6.47 -51.93 -0.34 0.87 16 41 H 0.07 0.80 6.28 -51.93 -0.33 0.47 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.97 7.35 -51.93 -0.38 1.59 16 LS Contribution 330.40 15.07 4.98 4.98 Total: -1.00 -32.64 330.40 -9.19 -41.83 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.69 Total: 2.94 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -2.23 Total: -1.77 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.30 Total: -54.56 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.64 -9.19 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030511929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.695 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds