Wall clock time and date at job start Tue Mar 31 2020 00:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00196 * 2 1 4 4 H 1.48503 * 109.47145 * 274.99305 * 3 2 1 5 5 H 1.48503 * 109.46752 * 34.99278 * 3 2 1 6 6 H 1.48498 * 109.47185 * 154.99363 * 3 2 1 7 7 C 1.38818 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00084 * 185.05730 * 7 2 1 9 9 N 1.36933 * 119.99735 * 5.05990 * 7 2 1 10 10 C 1.47582 * 134.49026 * 173.48729 * 9 7 2 11 11 C 1.53944 * 86.11805 * 155.35857 * 10 9 7 12 12 N 1.46501 * 113.74402 * 137.95556 * 11 10 9 13 13 C 1.34771 * 120.00248 * 154.99991 * 12 11 10 14 14 O 1.21279 * 120.00030 * 359.71923 * 13 12 11 15 15 C 1.50702 * 119.99864 * 179.97438 * 13 12 11 16 16 H 1.08999 * 109.26499 * 59.22082 * 15 13 12 17 17 C 1.51388 * 109.26632 * 299.72018 * 15 13 12 18 18 C 1.49505 * 117.51798 * 165.92448 * 17 15 13 19 19 C 1.50513 * 113.04217 * 79.72101 * 18 17 15 20 20 C 1.31660 * 116.92699 * 275.42986 * 19 18 17 21 21 C 1.50807 * 118.08652 * 0.27495 * 20 19 18 22 22 C 1.52712 * 108.95824 * 104.85439 * 21 20 19 23 23 C 1.53856 * 109.26226 * 178.68360 * 15 13 12 24 24 C 1.47577 * 134.49456 * 353.48435 * 9 7 2 25 25 H 0.97003 * 119.99972 * 359.97438 * 1 2 3 26 26 H 1.08997 * 113.77104 * 41.05205 * 10 9 7 27 27 H 1.09002 * 113.86883 * 269.67233 * 10 9 7 28 28 H 1.09006 * 113.73931 * 269.14977 * 11 10 9 29 29 H 0.97007 * 119.99558 * 334.99585 * 12 11 10 30 30 H 1.08997 * 107.83660 * 287.96320 * 17 15 13 31 31 H 1.09001 * 107.83446 * 43.93405 * 17 15 13 32 32 H 1.09003 * 108.76663 * 200.63862 * 18 17 15 33 33 H 1.09002 * 108.76919 * 318.91738 * 18 17 15 34 34 H 1.08006 * 121.53822 * 95.40970 * 19 18 17 35 35 H 1.08007 * 120.95951 * 180.25204 * 20 19 18 36 36 H 1.08999 * 109.55726 * 224.70626 * 21 20 19 37 37 H 1.09005 * 109.55361 * 344.91053 * 21 20 19 38 38 H 1.08999 * 109.61712 * 61.91106 * 22 21 20 39 39 H 1.09001 * 109.62255 * 182.45901 * 22 21 20 40 40 H 1.08996 * 109.80542 * 345.70721 * 23 15 13 41 41 H 1.08996 * 109.80319 * 106.58270 * 23 15 13 42 42 H 1.09004 * 113.77217 * 90.34510 * 24 9 7 43 43 H 1.09001 * 113.76886 * 318.93519 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5044 2.6199 0.8029 6 1 3.5965 1.4120 0.5918 7 6 2.0102 -1.2022 -0.0005 8 1 3.0871 -1.2041 0.0819 9 7 1.3295 -2.3857 -0.1057 10 6 1.7285 -3.7983 -0.2581 11 6 0.3709 -4.1419 0.3810 12 7 -0.3176 -5.2632 -0.2633 13 6 -1.2106 -5.9949 0.4319 14 8 -1.4407 -5.7284 1.5925 15 6 -1.9192 -7.1479 -0.2312 16 1 -1.1816 -7.8707 -0.5799 17 6 -2.7122 -6.6334 -1.4137 18 6 -3.2239 -7.6405 -2.3930 19 6 -4.4742 -8.3352 -1.9246 20 6 -4.3173 -9.3773 -1.1353 21 6 -2.9127 -9.7814 -0.7638 22 6 -2.6389 -9.3565 0.6772 23 6 -2.8503 -7.8258 0.7889 24 6 -0.0978 -2.7609 -0.1120 25 1 -0.4850 0.8401 0.0004 26 1 2.5859 -4.0811 0.3527 27 1 1.8202 -4.1213 -1.2951 28 1 0.4074 -4.2332 1.4666 29 1 -0.1306 -5.4788 -1.1905 30 1 -3.5675 -6.0796 -1.0266 31 1 -2.0819 -5.9299 -1.9577 32 1 -3.4351 -7.1365 -3.3362 33 1 -2.4506 -8.3899 -2.5619 34 1 -5.4550 -7.9945 -2.2220 35 1 -5.1699 -9.9266 -0.7643 36 1 -2.8089 -10.8629 -0.8514 37 1 -2.2035 -9.2916 -1.4313 38 1 -3.3274 -9.8709 1.3475 39 1 -1.6113 -9.6044 0.9430 40 1 -2.6010 -7.4911 1.7958 41 1 -3.8876 -7.5788 0.5631 42 1 -0.5433 -2.7775 -1.1066 43 1 -0.6986 -2.2154 0.6157 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030511929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:23 Heat of formation + Delta-G solvation = 7.202335 kcal Electronic energy + Delta-G solvation = -21966.447350 eV Core-core repulsion = 18819.548508 eV Total energy + Delta-G solvation = -3146.898841 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.43113 -39.83697 -38.73799 -35.22881 -34.25482 -33.95461 -33.36516 -29.52963 -28.00998 -26.86706 -26.62598 -24.98423 -23.17785 -22.20326 -21.37819 -20.77519 -18.86208 -18.78858 -18.37370 -17.35822 -16.96239 -16.40726 -16.05657 -15.79395 -15.73771 -15.34132 -14.81084 -14.61703 -14.42147 -13.87458 -13.69437 -13.57139 -13.30180 -13.22330 -12.85893 -12.80038 -12.65048 -12.33504 -12.29150 -12.12600 -11.94789 -11.69108 -11.65353 -11.52430 -11.25898 -10.91558 -10.85318 -10.72570 -9.93574 -9.69262 -8.97996 -7.94982 -5.29636 1.43828 1.44816 1.47082 1.56358 1.67676 2.19834 2.49925 3.23076 3.38900 3.67853 3.70745 3.85300 3.92762 4.13230 4.19201 4.25336 4.30828 4.45712 4.48404 4.52611 4.61130 4.69483 4.74314 4.83528 4.89571 4.91731 5.00612 5.07281 5.16043 5.19551 5.20145 5.24887 5.33491 5.38604 5.45025 5.46478 5.52778 5.71947 5.87551 5.91565 6.10940 6.65052 6.86425 7.34089 7.56171 8.50046 9.22495 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037937 B = 0.003354 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.887047 B = 8345.220941 C = 8584.293280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.068 4.068 3 Si 0.982 3.018 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.237 4.237 8 H 0.091 0.909 9 N -0.639 5.639 10 C 0.122 3.878 11 C 0.118 3.882 12 N -0.702 5.702 13 C 0.511 3.489 14 O -0.588 6.588 15 C -0.090 4.090 16 H 0.124 0.876 17 C -0.104 4.104 18 C -0.089 4.089 19 C -0.173 4.173 20 C -0.156 4.156 21 C -0.108 4.108 22 C -0.107 4.107 23 C -0.113 4.113 24 C 0.156 3.844 25 H 0.249 0.751 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.415 0.585 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.027 0.973 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.698 -22.262 -6.170 23.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.810 3.190 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.365 4.365 8 H 0.108 0.892 9 N -0.366 5.366 10 C -0.004 4.004 11 C 0.012 3.988 12 N -0.354 5.354 13 C 0.299 3.701 14 O -0.468 6.468 15 C -0.111 4.111 16 H 0.141 0.859 17 C -0.142 4.142 18 C -0.126 4.126 19 C -0.191 4.191 20 C -0.174 4.174 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.151 4.151 24 C 0.029 3.971 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.252 0.748 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.779 -21.732 -5.332 23.111 hybrid contribution 0.029 1.463 -0.201 1.477 sum -5.750 -20.269 -5.534 21.784 Atomic orbital electron populations 1.70056 1.06732 1.25769 1.57676 1.25752 0.96554 1.01261 1.02576 0.85004 0.77888 0.78736 0.77372 1.21136 1.22334 1.18818 1.19442 0.91421 0.82985 1.42692 0.89168 1.45986 1.03339 1.02169 1.85096 1.23016 0.95131 0.83298 0.98910 1.23154 0.93153 0.84782 0.97735 1.45909 1.42165 1.31205 1.16096 1.21401 0.78699 0.83725 0.86311 1.90654 1.65391 1.71212 1.19521 1.21234 0.98726 0.94533 0.96558 0.85874 1.20445 0.99536 0.99177 0.95005 1.20003 0.96410 0.98257 0.97901 1.23124 0.98743 0.97214 0.99987 1.23191 0.98257 0.97966 0.98009 1.21080 0.94940 1.01811 0.96668 1.21812 1.01939 0.93831 0.96855 1.22163 0.98687 0.95833 0.98406 1.22490 0.87286 0.90488 0.96861 0.94242 0.91828 0.91551 0.89228 0.74812 0.93504 0.91313 0.90525 0.89154 0.86763 0.86862 0.90413 0.89383 0.91435 0.91126 0.92396 0.91632 0.95530 0.95571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.29 11.51 21.65 0.25 -59.04 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.98 46.18 29.56 68.60 2.03 48.21 16 4 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.24 -13.44 10.70 84.04 0.90 -12.54 16 8 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 9 N -0.64 -33.13 3.70 -717.32 -2.65 -35.78 16 10 C 0.12 4.67 8.69 86.48 0.75 5.43 16 11 C 0.12 4.62 4.44 46.75 0.21 4.83 16 12 N -0.70 -20.61 5.09 -447.37 -2.28 -22.89 16 13 C 0.51 15.59 7.13 87.66 0.62 16.21 16 14 O -0.59 -23.80 14.78 -3.03 -0.04 -23.85 16 15 C -0.09 -1.85 2.07 -11.78 -0.02 -1.87 16 16 H 0.12 1.87 6.57 -2.39 -0.02 1.85 16 17 C -0.10 -1.91 4.27 28.95 0.12 -1.79 16 18 C -0.09 -1.23 5.14 28.67 0.15 -1.09 16 19 C -0.17 -2.53 9.28 24.97 0.23 -2.30 16 20 C -0.16 -2.16 8.55 25.06 0.21 -1.95 16 21 C -0.11 -1.34 5.41 29.79 0.16 -1.18 16 22 C -0.11 -1.65 5.60 31.16 0.17 -1.47 16 23 C -0.11 -2.46 5.19 31.54 0.16 -2.29 16 24 C 0.16 7.72 7.23 86.48 0.63 8.34 16 25 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 26 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 28 H 0.09 3.93 7.46 -2.38 -0.02 3.91 16 29 H 0.41 9.16 8.00 -92.70 -0.74 8.42 16 30 H 0.05 1.05 7.71 -2.39 -0.02 1.03 16 31 H 0.07 1.23 7.01 -2.39 -0.02 1.22 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.00 5.61 -2.39 -0.01 0.99 16 34 H 0.11 1.59 8.06 -2.91 -0.02 1.56 16 35 H 0.11 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 0.99 3.57 -2.38 -0.01 0.98 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.63 6.47 -2.39 -0.02 1.62 16 41 H 0.06 1.47 6.28 -2.39 -0.02 1.45 16 42 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.03 1.51 7.35 -2.39 -0.02 1.49 16 Total: -1.00 -73.14 330.40 2.33 -70.80 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.26 Total: 17.72 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 4.77 Total: 4.82 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -4.68 Total: -117.71 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.04 Total: -23.85 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -73.14 2.33 -70.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030511929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.007 kcal (2) G-P(sol) polarization free energy of solvation -73.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds