Wall clock time and date at job start Tue Mar 31 2020 00:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00331 * 2 1 4 4 H 1.48501 * 109.47411 * 240.00108 * 3 2 1 5 5 H 1.48494 * 109.46983 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46674 * 120.00236 * 3 2 1 7 7 C 1.38816 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00560 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.47579 * 134.49373 * 179.97438 * 9 7 2 11 11 C 1.53942 * 86.11771 * 155.36152 * 10 9 7 12 12 N 1.46498 * 113.74246 * 137.95530 * 11 10 9 13 13 C 1.34779 * 119.99782 * 156.92432 * 12 11 10 14 14 O 1.21275 * 120.00123 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99655 * 179.97438 * 13 12 11 16 16 H 1.09004 * 109.79448 * 299.17979 * 15 13 12 17 17 C 1.54921 * 109.80420 * 59.99714 * 15 13 12 18 18 C 1.52723 * 108.56743 * 176.55948 * 17 15 13 19 19 C 1.50804 * 108.95489 * 57.82235 * 18 17 15 20 20 C 1.31661 * 118.08045 * 255.41653 * 19 18 17 21 21 C 1.50515 * 116.92734 * 359.23028 * 20 19 18 22 22 C 1.49510 * 112.83075 * 84.95855 * 21 20 19 23 23 C 1.51395 * 117.51833 * 280.26160 * 22 21 20 24 24 C 1.47818 * 134.45529 * 359.86863 * 9 7 2 25 25 H 0.96998 * 119.99833 * 359.97438 * 1 2 3 26 26 H 1.09003 * 113.76618 * 41.05461 * 10 9 7 27 27 H 1.09000 * 113.86852 * 269.67520 * 10 9 7 28 28 H 1.09005 * 113.74131 * 269.15637 * 11 10 9 29 29 H 0.97001 * 120.00125 * 336.92311 * 12 11 10 30 30 H 1.09002 * 109.61817 * 56.83992 * 17 15 13 31 31 H 1.08999 * 109.62685 * 296.28749 * 17 15 13 32 32 H 1.08997 * 109.55778 * 297.97731 * 18 17 15 33 33 H 1.09003 * 109.55462 * 177.65871 * 18 17 15 34 34 H 1.08002 * 120.95631 * 75.13492 * 19 18 17 35 35 H 1.08006 * 121.53106 * 179.45057 * 20 19 18 36 36 H 1.09007 * 108.89597 * 324.09288 * 21 20 19 37 37 H 1.09003 * 108.86375 * 205.80430 * 21 20 19 38 38 H 1.09004 * 107.83473 * 158.23787 * 22 21 20 39 39 H 1.08994 * 107.80270 * 42.27517 * 22 21 20 40 40 H 1.09001 * 109.26484 * 313.54221 * 23 22 21 41 41 H 1.08997 * 109.23473 * 194.06324 * 23 22 21 42 42 H 1.09000 * 113.76681 * 90.37737 * 24 9 7 43 43 H 1.09000 * 113.83539 * 318.91551 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.7200 -3.8102 -0.0015 11 6 0.3474 -4.0832 0.6398 12 7 -0.3334 -5.2614 0.0969 13 6 -1.2728 -5.8934 0.8281 14 8 -1.5548 -5.4865 1.9352 15 6 -1.9735 -7.1050 0.2694 16 1 -2.5077 -6.8351 -0.6417 17 6 -0.9376 -8.2149 -0.0388 18 6 -1.6843 -9.4568 -0.5211 19 6 -2.5023 -9.0957 -1.7355 20 6 -3.8034 -8.9585 -1.5879 21 6 -4.3617 -9.1944 -0.2102 22 6 -4.2916 -7.9805 0.6599 23 6 -2.9617 -7.6612 1.3092 24 6 -0.1059 -2.7571 0.0024 25 1 -0.4850 0.8400 0.0004 26 1 2.5628 -4.0327 0.6530 27 1 1.8317 -4.2363 -0.9985 28 1 0.3606 -4.0647 1.7296 29 1 -0.1081 -5.5866 -0.7888 30 1 -0.3766 -8.4530 0.8649 31 1 -0.2552 -7.8729 -0.8170 32 1 -2.3434 -9.8160 0.2692 33 1 -0.9673 -10.2351 -0.7824 34 1 -2.0337 -8.9495 -2.6975 35 1 -4.4411 -8.6924 -2.4180 36 1 -3.8009 -9.9993 0.2650 37 1 -5.4037 -9.5017 -0.3000 38 1 -5.0311 -8.0947 1.4525 39 1 -4.5837 -7.1209 0.0568 40 1 -2.5486 -8.5694 1.7481 41 1 -3.1139 -6.9198 2.0935 42 1 -0.5320 -2.8717 -0.9943 43 1 -0.7185 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030511930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:26 Heat of formation + Delta-G solvation = 26.829947 kcal Electronic energy + Delta-G solvation = -21949.140896 eV Core-core repulsion = 18803.093171 eV Total energy + Delta-G solvation = -3146.047724 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.14954 -38.57137 -37.31882 -33.71468 -33.21139 -32.93624 -31.69857 -27.85002 -27.08456 -25.93204 -24.81158 -23.24372 -22.02654 -21.45710 -19.81007 -19.37874 -18.17800 -17.13399 -16.77611 -15.95922 -15.79316 -15.10936 -14.92206 -14.52890 -14.23083 -13.87248 -13.77793 -13.58752 -13.20932 -12.69412 -12.49121 -12.20256 -11.86385 -11.59700 -11.49011 -11.41971 -11.33179 -11.01879 -10.92748 -10.83169 -10.74236 -10.49376 -10.42526 -10.14259 -10.04159 -9.54077 -9.33717 -9.07206 -8.80078 -8.38258 -6.91382 -5.76633 -3.10754 2.04387 2.98960 3.39955 3.43397 3.45802 3.59130 4.44900 4.46860 4.59119 4.78936 4.82674 4.89965 4.95929 5.15739 5.19756 5.27125 5.38207 5.41796 5.48930 5.51518 5.58697 5.61511 5.69736 5.80637 5.87613 5.97118 5.99080 6.03305 6.09102 6.23118 6.26357 6.38256 6.44736 6.51344 6.58104 6.70821 6.82648 7.24691 7.38927 7.56996 7.94666 7.97765 8.63528 9.03181 9.69624 10.56593 11.40001 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035803 B = 0.003361 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.865329 B = 8330.045724 C = 8495.449471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.227 4.227 8 H 0.081 0.919 9 N -0.607 5.607 10 C 0.113 3.887 11 C 0.091 3.909 12 N -0.715 5.715 13 C 0.514 3.486 14 O -0.544 6.544 15 C -0.110 4.110 16 H 0.100 0.900 17 C -0.102 4.102 18 C -0.107 4.107 19 C -0.157 4.157 20 C -0.161 4.161 21 C -0.096 4.096 22 C -0.114 4.114 23 C -0.110 4.110 24 C 0.154 3.846 25 H 0.255 0.745 26 H 0.048 0.952 27 H 0.034 0.966 28 H 0.109 0.891 29 H 0.395 0.605 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.028 0.972 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 -21.178 -2.641 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.355 4.355 8 H 0.099 0.901 9 N -0.334 5.334 10 C -0.014 4.014 11 C -0.014 4.014 12 N -0.365 5.365 13 C 0.299 3.701 14 O -0.422 6.422 15 C -0.131 4.131 16 H 0.118 0.882 17 C -0.140 4.140 18 C -0.144 4.144 19 C -0.175 4.175 20 C -0.179 4.179 21 C -0.133 4.133 22 C -0.152 4.152 23 C -0.148 4.148 24 C 0.028 3.972 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.127 0.873 29 H 0.229 0.771 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.045 0.955 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.576 -20.493 -1.814 21.598 hybrid contribution 0.560 0.876 -0.861 1.350 sum -6.016 -19.617 -2.675 20.693 Atomic orbital electron populations 1.69823 1.05055 1.25590 1.56033 1.24819 0.95686 0.97631 1.02139 0.86170 0.78457 0.82984 0.77940 1.21150 1.21505 1.20981 1.18944 0.90221 0.81678 1.44621 0.90121 1.45721 1.02438 0.99141 1.86079 1.22858 0.94731 0.86866 0.96984 1.23863 0.93291 0.84390 0.99807 1.46140 1.39909 1.30745 1.19697 1.20582 0.79662 0.84336 0.85472 1.90656 1.64053 1.67057 1.20403 1.22000 0.97245 0.93325 1.00565 0.88212 1.21818 0.96723 0.94042 1.01398 1.21038 0.99101 0.97452 0.96792 1.23080 0.95261 1.00522 0.98615 1.23038 0.96102 1.01185 0.97594 1.20103 1.00961 0.98694 0.93530 1.20504 0.97837 0.98139 0.98725 1.21471 0.93668 1.01657 0.97966 1.22709 0.88082 0.89276 0.97151 0.93487 0.93343 0.94820 0.87295 0.77114 0.91118 0.91392 0.89654 0.91429 0.87170 0.86969 0.90853 0.91938 0.92209 0.92292 0.91712 0.89165 0.95460 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.81 11.39 55.49 0.63 -27.18 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.23 -6.47 10.70 -15.05 -0.16 -6.63 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.61 -15.84 3.70 -177.87 -0.66 -16.49 16 10 C 0.11 2.28 8.69 -2.97 -0.03 2.25 16 11 C 0.09 1.82 4.40 -70.14 -0.31 1.51 16 12 N -0.71 -11.16 5.29 -55.33 -0.29 -11.45 16 13 C 0.51 8.11 7.19 -10.98 -0.08 8.03 16 14 O -0.54 -10.85 14.84 5.56 0.08 -10.77 16 15 C -0.11 -1.25 2.22 -90.31 -0.20 -1.45 16 16 H 0.10 1.11 6.28 -51.93 -0.33 0.78 16 17 C -0.10 -0.93 4.79 -25.86 -0.12 -1.05 16 18 C -0.11 -0.83 5.42 -27.97 -0.15 -0.98 16 19 C -0.16 -1.25 8.56 -36.13 -0.31 -1.56 16 20 C -0.16 -1.30 9.25 -36.27 -0.34 -1.63 16 21 C -0.10 -0.75 5.14 -29.70 -0.15 -0.90 16 22 C -0.11 -1.06 4.90 -29.26 -0.14 -1.20 16 23 C -0.11 -1.21 4.97 -27.10 -0.13 -1.35 16 24 C 0.15 3.77 7.33 -2.83 -0.02 3.75 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.03 0.63 8.11 -51.93 -0.42 0.21 16 28 H 0.11 2.37 7.51 -51.93 -0.39 1.98 16 29 H 0.40 5.05 8.27 -40.82 -0.34 4.71 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.57 7.75 -51.93 -0.40 0.17 16 32 H 0.09 0.66 3.56 -51.93 -0.18 0.47 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.11 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.11 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.07 0.54 5.63 -51.92 -0.29 0.25 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.60 7.71 -51.93 -0.40 0.20 16 40 H 0.06 0.64 6.57 -51.93 -0.34 0.30 16 41 H 0.09 1.24 6.45 -51.93 -0.34 0.90 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 2.12 7.17 -51.93 -0.37 1.75 16 LS Contribution 331.24 15.07 4.99 4.99 Total: -1.00 -32.76 331.24 -9.24 -42.00 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.73 Total: 3.05 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -2.24 Total: -1.48 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.32 Total: -55.13 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.76 -9.24 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030511930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.832 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds