Wall clock time and date at job start Tue Mar 31 2020 00:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00331 * 2 1 4 4 H 1.48501 * 109.47411 * 240.00108 * 3 2 1 5 5 H 1.48494 * 109.46983 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46674 * 120.00236 * 3 2 1 7 7 C 1.38816 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00560 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.47579 * 134.49373 * 179.97438 * 9 7 2 11 11 C 1.53942 * 86.11771 * 155.36152 * 10 9 7 12 12 N 1.46498 * 113.74246 * 137.95530 * 11 10 9 13 13 C 1.34779 * 119.99782 * 156.92432 * 12 11 10 14 14 O 1.21275 * 120.00123 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99655 * 179.97438 * 13 12 11 16 16 H 1.09004 * 109.79448 * 299.17979 * 15 13 12 17 17 C 1.54921 * 109.80420 * 59.99714 * 15 13 12 18 18 C 1.52723 * 108.56743 * 176.55948 * 17 15 13 19 19 C 1.50804 * 108.95489 * 57.82235 * 18 17 15 20 20 C 1.31661 * 118.08045 * 255.41653 * 19 18 17 21 21 C 1.50515 * 116.92734 * 359.23028 * 20 19 18 22 22 C 1.49510 * 112.83075 * 84.95855 * 21 20 19 23 23 C 1.51395 * 117.51833 * 280.26160 * 22 21 20 24 24 C 1.47818 * 134.45529 * 359.86863 * 9 7 2 25 25 H 0.96998 * 119.99833 * 359.97438 * 1 2 3 26 26 H 1.09003 * 113.76618 * 41.05461 * 10 9 7 27 27 H 1.09000 * 113.86852 * 269.67520 * 10 9 7 28 28 H 1.09005 * 113.74131 * 269.15637 * 11 10 9 29 29 H 0.97001 * 120.00125 * 336.92311 * 12 11 10 30 30 H 1.09002 * 109.61817 * 56.83992 * 17 15 13 31 31 H 1.08999 * 109.62685 * 296.28749 * 17 15 13 32 32 H 1.08997 * 109.55778 * 297.97731 * 18 17 15 33 33 H 1.09003 * 109.55462 * 177.65871 * 18 17 15 34 34 H 1.08002 * 120.95631 * 75.13492 * 19 18 17 35 35 H 1.08006 * 121.53106 * 179.45057 * 20 19 18 36 36 H 1.09007 * 108.89597 * 324.09288 * 21 20 19 37 37 H 1.09003 * 108.86375 * 205.80430 * 21 20 19 38 38 H 1.09004 * 107.83473 * 158.23787 * 22 21 20 39 39 H 1.08994 * 107.80270 * 42.27517 * 22 21 20 40 40 H 1.09001 * 109.26484 * 313.54221 * 23 22 21 41 41 H 1.08997 * 109.23473 * 194.06324 * 23 22 21 42 42 H 1.09000 * 113.76681 * 90.37737 * 24 9 7 43 43 H 1.09000 * 113.83539 * 318.91551 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.7200 -3.8102 -0.0015 11 6 0.3474 -4.0832 0.6398 12 7 -0.3334 -5.2614 0.0969 13 6 -1.2728 -5.8934 0.8281 14 8 -1.5548 -5.4865 1.9352 15 6 -1.9735 -7.1050 0.2694 16 1 -2.5077 -6.8351 -0.6417 17 6 -0.9376 -8.2149 -0.0388 18 6 -1.6843 -9.4568 -0.5211 19 6 -2.5023 -9.0957 -1.7355 20 6 -3.8034 -8.9585 -1.5879 21 6 -4.3617 -9.1944 -0.2102 22 6 -4.2916 -7.9805 0.6599 23 6 -2.9617 -7.6612 1.3092 24 6 -0.1059 -2.7571 0.0024 25 1 -0.4850 0.8400 0.0004 26 1 2.5628 -4.0327 0.6530 27 1 1.8317 -4.2363 -0.9985 28 1 0.3606 -4.0647 1.7296 29 1 -0.1081 -5.5866 -0.7888 30 1 -0.3766 -8.4530 0.8649 31 1 -0.2552 -7.8729 -0.8170 32 1 -2.3434 -9.8160 0.2692 33 1 -0.9673 -10.2351 -0.7824 34 1 -2.0337 -8.9495 -2.6975 35 1 -4.4411 -8.6924 -2.4180 36 1 -3.8009 -9.9993 0.2650 37 1 -5.4037 -9.5017 -0.3000 38 1 -5.0311 -8.0947 1.4525 39 1 -4.5837 -7.1209 0.0568 40 1 -2.5486 -8.5694 1.7481 41 1 -3.1139 -6.9198 2.0935 42 1 -0.5320 -2.8717 -0.9943 43 1 -0.7185 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030511930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:25 Heat of formation + Delta-G solvation = 6.008151 kcal Electronic energy + Delta-G solvation = -21950.043796 eV Core-core repulsion = 18803.093171 eV Total energy + Delta-G solvation = -3146.950625 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34447 -39.83083 -38.74907 -35.19460 -34.28308 -33.80694 -33.43669 -29.57569 -28.09452 -26.82445 -26.63330 -24.95392 -22.90285 -22.47607 -21.35842 -20.73038 -18.82690 -18.78148 -18.26106 -17.33940 -16.96612 -16.73640 -15.96919 -15.74687 -15.58068 -15.40393 -14.80236 -14.54471 -14.32094 -14.15282 -13.63276 -13.37351 -13.29017 -13.20668 -12.89234 -12.78912 -12.62537 -12.34428 -12.30955 -12.16836 -11.96212 -11.71593 -11.67386 -11.53358 -11.28019 -10.89435 -10.80928 -10.67712 -9.94110 -9.68930 -8.99032 -7.93097 -5.28898 1.44568 1.44611 1.49011 1.55169 1.69754 2.21528 2.50534 3.24526 3.38487 3.71068 3.73298 3.83651 3.91368 4.11226 4.18214 4.24981 4.31188 4.47184 4.50931 4.57900 4.59162 4.72218 4.73083 4.79152 4.89104 4.96296 4.99707 5.11211 5.12986 5.16894 5.21288 5.26190 5.29910 5.41804 5.45850 5.47143 5.55999 5.72787 5.87811 5.92735 6.12110 6.66071 6.86317 7.35402 7.56746 8.49849 9.23528 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035803 B = 0.003361 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.865329 B = 8330.045724 C = 8495.449471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.069 4.069 3 Si 0.984 3.016 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.239 4.239 8 H 0.091 0.909 9 N -0.639 5.639 10 C 0.123 3.877 11 C 0.120 3.880 12 N -0.702 5.702 13 C 0.511 3.489 14 O -0.589 6.589 15 C -0.099 4.099 16 H 0.108 0.892 17 C -0.097 4.097 18 C -0.103 4.103 19 C -0.160 4.160 20 C -0.170 4.170 21 C -0.094 4.094 22 C -0.109 4.109 23 C -0.108 4.108 24 C 0.152 3.848 25 H 0.248 0.752 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.414 0.586 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.025 0.975 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 -23.270 -3.831 24.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.812 3.188 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.367 4.367 8 H 0.109 0.891 9 N -0.366 5.366 10 C -0.002 4.002 11 C 0.013 3.987 12 N -0.353 5.353 13 C 0.299 3.701 14 O -0.470 6.470 15 C -0.120 4.120 16 H 0.125 0.875 17 C -0.135 4.135 18 C -0.140 4.140 19 C -0.177 4.177 20 C -0.188 4.188 21 C -0.131 4.131 22 C -0.147 4.147 23 C -0.146 4.146 24 C 0.025 3.975 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.251 0.749 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.471 -22.650 -3.037 23.499 hybrid contribution 0.200 1.459 -0.471 1.546 sum -5.272 -21.191 -3.508 22.117 Atomic orbital electron populations 1.70043 1.06728 1.25801 1.57861 1.25740 0.96554 1.01284 1.02633 0.85070 0.77062 0.78241 0.78451 1.19847 1.22196 1.20071 1.19425 0.91021 0.82951 1.43270 0.89126 1.46056 1.03284 1.00877 1.86404 1.22998 0.94975 0.83523 0.98714 1.23117 0.93217 0.83998 0.98362 1.45902 1.39637 1.29272 1.20530 1.21418 0.78922 0.85000 0.84762 1.90649 1.65249 1.68448 1.22605 1.21998 0.97585 0.91947 1.00444 0.87459 1.21828 0.96211 0.93637 1.01841 1.21014 0.99314 0.96954 0.96725 1.23217 0.95262 1.00217 0.99051 1.23166 0.96446 1.01387 0.97793 1.20073 1.01838 0.97938 0.93218 1.20452 0.96752 0.98551 0.98930 1.21439 0.94699 1.01237 0.97238 1.22594 0.87325 0.91225 0.96376 0.94277 0.91760 0.91572 0.89353 0.74929 0.91264 0.90143 0.89542 0.89900 0.86367 0.86512 0.90025 0.90973 0.91733 0.93453 0.90325 0.92337 0.95737 0.95126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.79 11.39 21.65 0.25 -59.54 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.24 -13.59 10.70 84.03 0.90 -12.69 16 8 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 9 N -0.64 -33.40 3.70 -716.66 -2.65 -36.06 16 10 C 0.12 4.77 8.69 86.48 0.75 5.52 16 11 C 0.12 4.74 4.40 46.75 0.21 4.94 16 12 N -0.70 -21.10 5.29 -447.37 -2.36 -23.46 16 13 C 0.51 15.91 7.19 87.66 0.63 16.54 16 14 O -0.59 -24.12 14.84 -3.01 -0.04 -24.16 16 15 C -0.10 -2.10 2.22 -10.59 -0.02 -2.13 16 16 H 0.11 2.19 6.28 -2.38 -0.01 2.17 16 17 C -0.10 -1.50 4.79 31.16 0.15 -1.35 16 18 C -0.10 -1.27 5.42 29.79 0.16 -1.11 16 19 C -0.16 -2.06 8.56 25.06 0.21 -1.85 16 20 C -0.17 -2.32 9.25 24.97 0.23 -2.09 16 21 C -0.09 -1.26 5.14 28.67 0.15 -1.11 16 22 C -0.11 -1.90 4.90 28.95 0.14 -1.75 16 23 C -0.11 -2.30 4.97 30.36 0.15 -2.15 16 24 C 0.15 7.61 7.33 86.45 0.63 8.25 16 25 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 26 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 27 H 0.07 2.21 8.11 -2.39 -0.02 2.19 16 28 H 0.09 3.92 7.51 -2.38 -0.02 3.91 16 29 H 0.41 9.50 8.27 -92.71 -0.77 8.73 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.06 7.75 -2.39 -0.02 1.04 16 32 H 0.09 1.06 3.56 -2.39 -0.01 1.05 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.12 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.12 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.08 0.98 5.63 -2.38 -0.01 0.97 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.05 0.93 7.71 -2.39 -0.02 0.91 16 40 H 0.08 1.43 6.57 -2.39 -0.02 1.41 16 41 H 0.06 1.65 6.45 -2.39 -0.02 1.63 16 42 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.03 1.79 7.17 -2.39 -0.02 1.78 16 Total: -1.00 -73.18 331.24 2.21 -70.97 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.24 Total: 18.38 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 4.76 Total: 5.45 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -4.77 Total: -119.06 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.04 Total: -24.16 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -73.18 2.21 -70.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030511930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.980 kcal (2) G-P(sol) polarization free energy of solvation -73.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds