Wall clock time and date at job start Tue Mar 31 2020 00:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99875 * 2 1 4 4 H 1.48495 * 109.46964 * 274.98466 * 3 2 1 5 5 H 1.48496 * 109.47273 * 34.98637 * 3 2 1 6 6 H 1.48502 * 109.46988 * 154.98485 * 3 2 1 7 7 C 1.38808 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00288 * 174.95528 * 7 2 1 9 9 N 1.36940 * 119.99773 * 355.22386 * 7 2 1 10 10 C 1.47060 * 136.05913 * 5.76294 * 9 7 2 11 11 C 1.53751 * 87.88866 * 152.95722 * 10 9 7 12 12 C 1.53008 * 114.08609 * 139.78004 * 11 10 9 13 13 N 1.46500 * 109.47326 * 91.56051 * 12 11 10 14 14 C 1.34770 * 120.00053 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00048 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00129 * 179.97438 * 14 13 12 17 17 H 1.09002 * 115.57258 * 325.85624 * 16 14 13 18 18 C 1.52307 * 117.53624 * 111.82045 * 16 14 13 19 19 H 1.08999 * 115.91507 * 0.84924 * 18 16 14 20 20 C 1.50464 * 120.89985 * 218.09077 * 18 16 14 21 21 C 1.52870 * 110.08214 * 310.03932 * 20 18 16 22 22 C 1.53300 * 108.58747 * 304.99087 * 21 20 18 23 23 C 1.52881 * 108.58034 * 74.45218 * 22 21 20 24 24 C 1.52066 * 60.63673 * 107.37977 * 18 16 14 25 25 H 1.09007 * 117.25248 * 252.86529 * 24 18 16 26 26 C 1.47066 * 136.05332 * 186.12113 * 9 7 2 27 27 H 0.97004 * 119.99538 * 0.02562 * 1 2 3 28 28 H 1.09005 * 113.46955 * 267.68761 * 10 9 7 29 29 H 1.08999 * 113.47400 * 38.12590 * 10 9 7 30 30 H 1.09005 * 114.39579 * 272.67223 * 11 10 9 31 31 H 1.09007 * 109.46707 * 211.55613 * 12 11 10 32 32 H 1.08996 * 109.46998 * 331.56084 * 12 11 10 33 33 H 0.96998 * 119.99682 * 359.97438 * 13 12 11 34 34 H 1.08998 * 109.57657 * 189.83643 * 20 18 16 35 35 H 1.09001 * 109.36074 * 70.09447 * 20 18 16 36 36 H 1.09010 * 109.61571 * 185.26664 * 21 20 18 37 37 H 1.08999 * 109.62399 * 64.72815 * 21 20 18 38 38 H 1.08998 * 109.62440 * 314.72362 * 22 21 20 39 39 H 1.09004 * 109.77139 * 194.26235 * 22 21 20 40 40 H 1.08993 * 109.35860 * 185.26608 * 23 22 21 41 41 H 1.09003 * 109.24318 * 65.61055 * 23 22 21 42 42 H 1.08997 * 113.47297 * 321.86894 * 26 9 7 43 43 H 1.08999 * 113.46483 * 92.31553 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2040 -0.0828 9 7 1.3291 -2.3860 0.0977 10 6 -0.0828 -2.7971 0.1140 11 6 0.3644 -4.1530 -0.4565 12 6 -0.3648 -5.3554 0.1466 13 7 -1.5442 -5.6682 -0.6640 14 6 -2.3442 -6.6972 -0.3209 15 8 -2.0879 -7.3638 0.6593 16 6 -3.5578 -7.0186 -1.1545 17 1 -4.0611 -6.1620 -1.6028 18 6 -3.5455 -8.3218 -1.9428 19 1 -2.6531 -8.9377 -1.8311 20 6 -4.1404 -8.3956 -3.3228 21 6 -5.5480 -7.7993 -3.3202 22 6 -6.3810 -8.5175 -2.2523 23 6 -5.9379 -8.0234 -0.8751 24 6 -4.4302 -8.2034 -0.7117 25 1 -4.1183 -8.7453 0.1812 26 6 1.6875 -3.8052 0.2396 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5034 -2.8658 1.1173 29 1 -0.7101 -2.2231 -0.5680 30 1 0.4267 -4.1853 -1.5443 31 1 0.3043 -6.2158 0.1618 32 1 -0.6756 -5.1187 1.1642 33 1 -1.7494 -5.1348 -1.4478 34 1 -4.1911 -9.4362 -3.6435 35 1 -3.5138 -7.8355 -4.0169 36 1 -6.0071 -7.9406 -4.2987 37 1 -5.4945 -6.7356 -3.0885 38 1 -6.2199 -9.5931 -2.3245 39 1 -7.4381 -8.2952 -2.3981 40 1 -6.4555 -8.5928 -0.1032 41 1 -6.1887 -6.9674 -0.7744 42 1 2.5685 -4.0901 -0.3355 43 1 1.7336 -4.1397 1.2760 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031596895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:51 Heat of formation + Delta-G solvation = 23.389686 kcal Electronic energy + Delta-G solvation = -21288.909660 eV Core-core repulsion = 18142.712755 eV Total energy + Delta-G solvation = -3146.196905 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54302 -38.80885 -37.90231 -34.37397 -33.28051 -32.20179 -31.10635 -29.03940 -26.52234 -25.04537 -24.57360 -22.81433 -22.62905 -21.57239 -20.17809 -19.18712 -18.57128 -17.32982 -16.72230 -15.89435 -15.54745 -15.15561 -14.76209 -14.52189 -14.24059 -14.20989 -13.75560 -13.70437 -13.26766 -12.91403 -12.60220 -12.42007 -12.28704 -11.97983 -11.51050 -11.37160 -11.28112 -11.13621 -11.00997 -10.82070 -10.58827 -10.52671 -10.06747 -10.05478 -9.94866 -9.80440 -9.57882 -9.23716 -8.82877 -8.76166 -6.89114 -5.80438 -3.11917 2.58632 3.29202 3.37587 3.43052 3.45215 3.65800 4.39770 4.44027 4.47824 4.52667 4.74662 4.82735 4.91202 5.10703 5.12259 5.23530 5.26792 5.27605 5.33364 5.36226 5.45091 5.66870 5.67549 5.69712 5.75612 5.84260 5.85774 5.95555 6.02981 6.04031 6.05041 6.18348 6.24234 6.39147 6.53236 6.65975 6.76941 7.19042 7.31373 7.52666 7.71564 7.94961 8.40119 9.01405 9.67879 10.62505 11.37650 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030519 B = 0.002958 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.237380 B = 9462.656237 C = 9862.739754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.082 0.918 9 N -0.611 5.611 10 C 0.164 3.836 11 C -0.160 4.160 12 C 0.134 3.866 13 N -0.718 5.718 14 C 0.539 3.461 15 O -0.550 6.550 16 C -0.188 4.188 17 H 0.123 0.877 18 C -0.112 4.112 19 H 0.100 0.900 20 C -0.090 4.090 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.092 4.092 24 C -0.111 4.111 25 H 0.116 0.884 26 C 0.128 3.872 27 H 0.254 0.746 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.402 0.598 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.758 -17.345 -6.870 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.346 4.346 8 H 0.100 0.900 9 N -0.337 5.337 10 C 0.038 3.962 11 C -0.180 4.180 12 C 0.010 3.990 13 N -0.368 5.368 14 C 0.325 3.675 15 O -0.428 6.428 16 C -0.209 4.209 17 H 0.141 0.859 18 C -0.131 4.131 19 H 0.118 0.882 20 C -0.127 4.127 21 C -0.163 4.163 22 C -0.157 4.157 23 C -0.130 4.130 24 C -0.129 4.129 25 H 0.134 0.866 26 C 0.001 3.999 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.236 0.764 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.486 -17.411 -6.165 21.750 hybrid contribution 0.464 1.379 -0.175 1.465 sum -11.022 -16.032 -6.340 20.462 Atomic orbital electron populations 1.69847 1.05077 1.25392 1.56209 1.24837 0.95711 0.97576 1.02324 0.86109 0.78730 0.83464 0.77536 1.21560 1.21576 1.20563 1.18940 0.90640 0.81532 1.43523 0.90050 1.45544 1.02821 1.00584 1.84729 1.22153 0.88736 0.88010 0.97255 1.23681 0.98986 0.95049 1.00270 1.21363 0.85577 0.97297 0.94811 1.45996 1.27246 1.32544 1.30979 1.19664 0.83129 0.80036 0.84647 1.90671 1.73390 1.50882 1.27841 1.22502 0.99106 0.94527 1.04796 0.85903 1.21456 1.01334 0.97218 0.93043 0.88200 1.20627 0.96122 1.01606 0.94385 1.21652 0.95383 1.00222 0.99004 1.21575 0.99130 1.00393 0.94573 1.21099 0.92708 1.01731 0.97414 1.22320 0.92633 0.99108 0.98856 0.86636 1.22316 0.94235 0.86613 0.96769 0.93639 0.95530 0.91480 0.88885 0.91992 0.91416 0.76353 0.90991 0.91131 0.91719 0.91627 0.91672 0.91842 0.91256 0.91350 0.94067 0.94767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.32 11.61 55.49 0.64 -26.68 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.15 29.56 -169.99 -5.02 17.12 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.22 -6.20 10.74 -15.06 -0.16 -6.37 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.80 16 9 N -0.61 -15.83 3.78 -184.62 -0.70 -16.53 16 10 C 0.16 3.81 6.90 -8.38 -0.06 3.75 16 11 C -0.16 -2.88 4.12 -89.97 -0.37 -3.25 16 12 C 0.13 2.12 5.59 -4.04 -0.02 2.10 16 13 N -0.72 -10.03 5.56 -60.29 -0.33 -10.37 16 14 C 0.54 7.84 7.61 -10.99 -0.08 7.76 16 15 O -0.55 -9.99 16.26 5.56 0.09 -9.90 16 16 C -0.19 -2.06 5.34 -91.79 -0.49 -2.55 16 17 H 0.12 1.18 7.30 -51.93 -0.38 0.80 16 18 C -0.11 -1.06 5.53 -92.72 -0.51 -1.57 16 19 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 20 C -0.09 -0.66 5.92 -28.06 -0.17 -0.83 16 21 C -0.13 -0.86 5.70 -26.64 -0.15 -1.01 16 22 C -0.12 -0.81 5.92 -26.64 -0.16 -0.97 16 23 C -0.09 -0.75 5.83 -26.94 -0.16 -0.90 16 24 C -0.11 -1.12 5.75 -90.91 -0.52 -1.64 16 25 H 0.12 1.36 7.67 -51.92 -0.40 0.96 16 26 C 0.13 2.61 8.25 -8.51 -0.07 2.54 16 27 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.03 0.65 7.87 -51.93 -0.41 0.24 16 29 H 0.07 1.70 7.29 -51.93 -0.38 1.32 16 30 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.18 7.80 -51.93 -0.40 0.77 16 33 H 0.40 4.84 8.47 -40.82 -0.35 4.49 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.07 0.48 7.13 -51.93 -0.37 0.11 16 38 H 0.06 0.44 8.04 -51.93 -0.42 0.02 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.56 8.06 -51.93 -0.42 0.14 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -32.69 343.95 -10.45 -43.15 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.29 Total: 1.27 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.02 Total: -3.26 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.39 Total: -53.57 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.69 -10.45 -43.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031596895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.537 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds