Wall clock time and date at job start Tue Mar 31 2020 00:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99875 * 2 1 4 4 H 1.48495 * 109.46964 * 274.98466 * 3 2 1 5 5 H 1.48496 * 109.47273 * 34.98637 * 3 2 1 6 6 H 1.48502 * 109.46988 * 154.98485 * 3 2 1 7 7 C 1.38808 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00288 * 174.95528 * 7 2 1 9 9 N 1.36940 * 119.99773 * 355.22386 * 7 2 1 10 10 C 1.47060 * 136.05913 * 5.76294 * 9 7 2 11 11 C 1.53751 * 87.88866 * 152.95722 * 10 9 7 12 12 C 1.53008 * 114.08609 * 139.78004 * 11 10 9 13 13 N 1.46500 * 109.47326 * 91.56051 * 12 11 10 14 14 C 1.34770 * 120.00053 * 179.97438 * 13 12 11 15 15 O 1.21282 * 120.00048 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00129 * 179.97438 * 14 13 12 17 17 H 1.09002 * 115.57258 * 325.85624 * 16 14 13 18 18 C 1.52307 * 117.53624 * 111.82045 * 16 14 13 19 19 H 1.08999 * 115.91507 * 0.84924 * 18 16 14 20 20 C 1.50464 * 120.89985 * 218.09077 * 18 16 14 21 21 C 1.52870 * 110.08214 * 310.03932 * 20 18 16 22 22 C 1.53300 * 108.58747 * 304.99087 * 21 20 18 23 23 C 1.52881 * 108.58034 * 74.45218 * 22 21 20 24 24 C 1.52066 * 60.63673 * 107.37977 * 18 16 14 25 25 H 1.09007 * 117.25248 * 252.86529 * 24 18 16 26 26 C 1.47066 * 136.05332 * 186.12113 * 9 7 2 27 27 H 0.97004 * 119.99538 * 0.02562 * 1 2 3 28 28 H 1.09005 * 113.46955 * 267.68761 * 10 9 7 29 29 H 1.08999 * 113.47400 * 38.12590 * 10 9 7 30 30 H 1.09005 * 114.39579 * 272.67223 * 11 10 9 31 31 H 1.09007 * 109.46707 * 211.55613 * 12 11 10 32 32 H 1.08996 * 109.46998 * 331.56084 * 12 11 10 33 33 H 0.96998 * 119.99682 * 359.97438 * 13 12 11 34 34 H 1.08998 * 109.57657 * 189.83643 * 20 18 16 35 35 H 1.09001 * 109.36074 * 70.09447 * 20 18 16 36 36 H 1.09010 * 109.61571 * 185.26664 * 21 20 18 37 37 H 1.08999 * 109.62399 * 64.72815 * 21 20 18 38 38 H 1.08998 * 109.62440 * 314.72362 * 22 21 20 39 39 H 1.09004 * 109.77139 * 194.26235 * 22 21 20 40 40 H 1.08993 * 109.35860 * 185.26608 * 23 22 21 41 41 H 1.09003 * 109.24318 * 65.61055 * 23 22 21 42 42 H 1.08997 * 113.47297 * 321.86894 * 26 9 7 43 43 H 1.08999 * 113.46483 * 92.31553 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0871 -1.2040 -0.0828 9 7 1.3291 -2.3860 0.0977 10 6 -0.0828 -2.7971 0.1140 11 6 0.3644 -4.1530 -0.4565 12 6 -0.3648 -5.3554 0.1466 13 7 -1.5442 -5.6682 -0.6640 14 6 -2.3442 -6.6972 -0.3209 15 8 -2.0879 -7.3638 0.6593 16 6 -3.5578 -7.0186 -1.1545 17 1 -4.0611 -6.1620 -1.6028 18 6 -3.5455 -8.3218 -1.9428 19 1 -2.6531 -8.9377 -1.8311 20 6 -4.1404 -8.3956 -3.3228 21 6 -5.5480 -7.7993 -3.3202 22 6 -6.3810 -8.5175 -2.2523 23 6 -5.9379 -8.0234 -0.8751 24 6 -4.4302 -8.2034 -0.7117 25 1 -4.1183 -8.7453 0.1812 26 6 1.6875 -3.8052 0.2396 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5034 -2.8658 1.1173 29 1 -0.7101 -2.2231 -0.5680 30 1 0.4267 -4.1853 -1.5443 31 1 0.3043 -6.2158 0.1618 32 1 -0.6756 -5.1187 1.1642 33 1 -1.7494 -5.1348 -1.4478 34 1 -4.1911 -9.4362 -3.6435 35 1 -3.5138 -7.8355 -4.0169 36 1 -6.0071 -7.9406 -4.2987 37 1 -5.4945 -6.7356 -3.0885 38 1 -6.2199 -9.5931 -2.3245 39 1 -7.4381 -8.2952 -2.3981 40 1 -6.4555 -8.5928 -0.1032 41 1 -6.1887 -6.9674 -0.7744 42 1 2.5685 -4.0901 -0.3355 43 1 1.7336 -4.1397 1.2760 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031596895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:50 Heat of formation + Delta-G solvation = 3.317498 kcal Electronic energy + Delta-G solvation = -21289.780056 eV Core-core repulsion = 18142.712755 eV Total energy + Delta-G solvation = -3147.067301 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.49661 -40.20325 -39.23159 -35.76161 -34.24143 -33.95737 -31.72031 -30.73839 -28.10128 -26.39770 -26.06778 -24.04911 -23.42692 -22.79892 -21.44210 -20.55117 -19.41118 -18.75201 -18.28559 -17.17664 -16.96620 -16.51685 -16.11540 -15.79577 -15.42710 -15.02420 -14.84404 -14.75059 -14.64935 -14.33335 -13.98078 -13.37821 -13.23595 -13.10052 -13.05357 -12.87841 -12.68988 -12.68448 -12.24667 -12.01418 -11.87475 -11.73903 -11.69669 -11.18006 -11.08987 -10.91621 -10.89956 -10.76621 -10.54742 -10.04408 -8.94676 -7.94813 -5.27774 1.44668 1.46820 1.48949 1.56002 2.16793 2.45749 2.79714 3.27209 3.41978 3.58154 3.68610 3.73074 3.81397 4.02775 4.08117 4.14357 4.22997 4.32265 4.40252 4.45158 4.56564 4.64865 4.72247 4.75409 4.81861 4.83677 4.87369 5.02902 5.06207 5.08820 5.12053 5.22017 5.29066 5.34883 5.37982 5.43547 5.46734 5.50409 5.56727 5.61104 5.89911 6.57866 6.88050 7.25092 7.56806 8.58117 9.23432 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030519 B = 0.002958 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.237380 B = 9462.656237 C = 9862.739754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.067 4.067 3 Si 0.980 3.020 4 H -0.283 1.283 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.233 4.233 8 H 0.087 0.913 9 N -0.645 5.645 10 C 0.161 3.839 11 C -0.118 4.118 12 C 0.145 3.855 13 N -0.712 5.712 14 C 0.536 3.464 15 O -0.590 6.590 16 C -0.195 4.195 17 H 0.140 0.860 18 C -0.097 4.097 19 H 0.090 0.910 20 C -0.088 4.088 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.090 4.090 24 C -0.113 4.113 25 H 0.094 0.906 26 C 0.125 3.875 27 H 0.249 0.751 28 H 0.011 0.989 29 H 0.039 0.961 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.414 0.586 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.898 -18.189 -8.363 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.361 4.361 8 H 0.104 0.896 9 N -0.371 5.371 10 C 0.035 3.965 11 C -0.138 4.138 12 C 0.020 3.980 13 N -0.362 5.362 14 C 0.325 3.675 15 O -0.471 6.471 16 C -0.215 4.215 17 H 0.158 0.842 18 C -0.116 4.116 19 H 0.108 0.892 20 C -0.125 4.125 21 C -0.162 4.162 22 C -0.154 4.154 23 C -0.128 4.128 24 C -0.132 4.132 25 H 0.112 0.888 26 C -0.001 4.001 27 H 0.058 0.942 28 H 0.028 0.972 29 H 0.057 0.943 30 H 0.126 0.874 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.250 0.750 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.614 -18.278 -7.681 22.978 hybrid contribution 0.527 1.575 0.329 1.693 sum -11.087 -16.703 -7.352 21.354 Atomic orbital electron populations 1.70029 1.06534 1.25738 1.57704 1.25702 0.96624 1.01000 1.02720 0.85037 0.77746 0.78917 0.77486 1.20985 1.22094 1.19301 1.19356 0.91236 0.82903 1.42633 0.89576 1.45935 1.04179 1.01972 1.84970 1.22109 0.87583 0.90640 0.96119 1.23303 0.96872 0.92920 1.00693 1.21099 0.86319 0.96556 0.94020 1.45919 1.26644 1.32643 1.31031 1.20252 0.83697 0.79248 0.84334 1.90651 1.74534 1.52237 1.29712 1.22493 0.97910 0.95799 1.05334 0.84219 1.21518 1.00737 0.95311 0.94016 0.89221 1.20669 0.96488 1.02585 0.92789 1.21668 0.94985 0.99878 0.99700 1.21572 0.99797 1.00498 0.93508 1.21116 0.91072 1.01906 0.98690 1.22359 0.94016 0.98244 0.98573 0.88775 1.22495 0.96059 0.83745 0.97770 0.94200 0.97173 0.94272 0.87380 0.90790 0.93058 0.75022 0.89814 0.90460 0.90336 0.92008 0.91394 0.90674 0.90810 0.91390 0.92302 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.77 11.61 21.65 0.25 -57.52 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 3 Si 0.98 45.79 29.56 68.60 2.03 47.82 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.23 -13.24 10.74 84.03 0.90 -12.33 16 8 H 0.09 4.65 7.83 -2.91 -0.02 4.62 16 9 N -0.64 -33.44 3.78 -738.01 -2.79 -36.23 16 10 C 0.16 7.61 6.90 83.26 0.57 8.18 16 11 C -0.12 -4.13 4.12 -10.37 -0.04 -4.17 16 12 C 0.14 4.46 5.59 86.38 0.48 4.94 16 13 N -0.71 -19.19 5.56 -463.05 -2.57 -21.76 16 14 C 0.54 15.36 7.61 87.66 0.67 16.02 16 15 O -0.59 -21.62 16.26 -3.04 -0.05 -21.67 16 16 C -0.19 -4.06 5.34 -11.55 -0.06 -4.12 16 17 H 0.14 2.43 7.30 -2.39 -0.02 2.42 16 18 C -0.10 -1.70 5.53 -12.15 -0.07 -1.76 16 19 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 20 C -0.09 -1.08 5.92 29.73 0.18 -0.90 16 21 C -0.12 -1.37 5.70 30.65 0.17 -1.20 16 22 C -0.12 -1.31 5.92 30.66 0.18 -1.13 16 23 C -0.09 -1.33 5.83 30.46 0.18 -1.16 16 24 C -0.11 -2.22 5.75 -10.98 -0.06 -2.28 16 25 H 0.09 2.26 7.67 -2.38 -0.02 2.24 16 26 C 0.12 4.97 8.25 83.18 0.69 5.66 16 27 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 28 H 0.01 0.52 7.87 -2.38 -0.02 0.50 16 29 H 0.04 2.04 7.29 -2.39 -0.02 2.02 16 30 H 0.11 3.51 8.14 -2.38 -0.02 3.49 16 31 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.05 1.78 7.80 -2.39 -0.02 1.76 16 33 H 0.41 9.33 8.47 -92.71 -0.79 8.55 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.06 0.74 7.13 -2.39 -0.02 0.72 16 38 H 0.07 0.74 8.04 -2.39 -0.02 0.72 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.02 8.06 -2.39 -0.02 1.00 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 Total: -1.00 -71.18 343.95 1.33 -69.85 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.20 Total: 17.16 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 4.26 Total: 2.36 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -5.11 Total: -115.52 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.05 Total: -21.67 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -71.18 1.33 -69.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031596895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.168 kcal (2) G-P(sol) polarization free energy of solvation -71.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds