Wall clock time and date at job start Tue Mar 31 2020 00:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 119.99815 * 2 1 4 4 H 1.48505 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47266 * 299.99362 * 3 2 1 6 6 H 1.48499 * 109.47485 * 59.99960 * 3 2 1 7 7 C 1.38814 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00262 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99686 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.49218 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11751 * 155.35412 * 10 9 7 12 12 C 1.52992 * 113.74144 * 137.95167 * 11 10 9 13 13 N 1.46499 * 109.47267 * 176.92783 * 12 11 10 14 14 C 1.34784 * 119.99971 * 180.02562 * 13 12 11 15 15 O 1.21605 * 119.99806 * 359.72704 * 14 13 12 16 16 C 1.47099 * 119.99647 * 179.97438 * 14 13 12 17 17 C 1.31559 * 119.85105 * 180.02562 * 16 14 13 18 18 C 1.51409 * 120.29459 * 179.97438 * 17 16 14 19 19 C 1.53031 * 108.57517 * 71.58308 * 18 17 16 20 20 C 1.51779 * 110.81139 * 274.29237 * 19 18 17 21 21 C 1.51775 * 113.84458 * 66.93969 * 20 19 18 22 22 C 1.51410 * 119.85678 * 359.72744 * 16 14 13 23 23 C 1.47812 * 134.45739 * 359.86385 * 9 7 2 24 24 H 0.97003 * 120.00483 * 0.02562 * 1 2 3 25 25 H 1.08998 * 113.76700 * 41.06017 * 10 9 7 26 26 H 1.08994 * 113.76896 * 269.65921 * 10 9 7 27 27 H 1.08997 * 113.74146 * 269.15894 * 11 10 9 28 28 H 1.09004 * 109.47330 * 56.92686 * 12 11 10 29 29 H 1.09005 * 109.47124 * 296.92890 * 12 11 10 30 30 H 0.96999 * 119.99984 * 359.97438 * 13 12 11 31 31 H 1.08001 * 119.85374 * 359.95476 * 17 16 14 32 32 H 1.09002 * 109.62193 * 191.31305 * 18 17 16 33 33 H 1.09001 * 109.61428 * 311.67475 * 18 17 16 34 34 H 1.09003 * 109.20973 * 34.63793 * 19 18 17 35 35 H 1.09003 * 109.21111 * 153.99466 * 19 18 17 36 36 H 1.09002 * 108.60991 * 188.07001 * 20 19 18 37 37 H 1.09000 * 108.60825 * 305.95232 * 20 19 18 38 38 H 1.09001 * 109.20742 * 53.40228 * 21 20 19 39 39 H 1.09002 * 109.21335 * 172.76302 * 21 20 19 40 40 H 1.08999 * 109.61878 * 228.16170 * 22 16 14 41 41 H 1.09002 * 109.61739 * 348.70426 * 22 16 14 42 42 H 1.08991 * 113.77048 * 90.38142 * 23 9 7 43 43 H 1.09002 * 113.83635 * 318.91933 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7202 -3.8101 0.0015 11 6 0.3467 -4.0827 0.6410 12 6 -0.3634 -5.3136 0.0742 13 7 -1.6205 -5.5275 0.7953 14 6 -2.4190 -6.5621 0.4655 15 8 -2.0983 -7.3149 -0.4340 16 6 -3.6810 -6.7771 1.1901 17 6 -4.4580 -7.7881 0.8661 18 6 -5.7588 -8.0192 1.6056 19 6 -6.7524 -6.9296 1.1965 20 6 -6.5713 -5.6870 2.0490 21 6 -5.2502 -4.9750 1.8228 22 6 -4.0768 -5.8380 2.3099 23 6 -0.1057 -2.7571 0.0026 24 1 -0.4851 0.8400 -0.0004 25 1 2.5620 -4.0320 0.6575 26 1 1.8328 -4.2355 -0.9957 27 1 0.3583 -4.0631 1.7308 28 1 0.2762 -6.1883 0.1916 29 1 -0.5736 -5.1567 -0.9838 30 1 -1.8779 -4.9251 1.5107 31 1 -4.1668 -8.4560 0.0689 32 1 -6.1603 -8.9980 1.3430 33 1 -5.5822 -7.9725 2.6802 34 1 -6.5919 -6.6727 0.1494 35 1 -7.7681 -7.3049 1.3219 36 1 -7.3826 -4.9930 1.8291 37 1 -6.6347 -5.9732 3.0988 38 1 -5.1303 -4.7710 0.7588 39 1 -5.2522 -4.0326 2.3706 40 1 -4.3823 -6.4164 3.1818 41 1 -3.2316 -5.2001 2.5684 42 1 -0.5311 -2.8723 -0.9943 43 1 -0.7188 -2.1400 0.6594 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031631061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:00 Heat of formation + Delta-G solvation = 13.687770 kcal Electronic energy + Delta-G solvation = -21589.465437 eV Core-core repulsion = 18442.847825 eV Total energy + Delta-G solvation = -3146.617612 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.04081 -38.32882 -37.66274 -34.44553 -32.75675 -32.28847 -31.89872 -28.82983 -26.28831 -25.58857 -24.78733 -24.18198 -22.10786 -21.13799 -20.52061 -19.32984 -18.00348 -17.26855 -16.69503 -16.11471 -15.29430 -15.01357 -14.93744 -14.71047 -14.28989 -13.83635 -13.75133 -13.44012 -13.39593 -13.06621 -12.76554 -12.32823 -12.16456 -11.83582 -11.43763 -11.33097 -11.27775 -10.99537 -10.93097 -10.87382 -10.72039 -10.65665 -10.54548 -9.98042 -9.74336 -9.61985 -9.41326 -9.17724 -8.80647 -8.72307 -6.87605 -5.77060 -3.09049 1.42371 3.37452 3.38795 3.43637 3.45083 3.46456 4.44190 4.45245 4.61156 4.63117 4.80455 4.83501 5.00298 5.15930 5.17081 5.28562 5.33047 5.36867 5.42806 5.50902 5.55780 5.63098 5.68627 5.84197 5.85889 5.92034 5.94629 5.98476 6.06709 6.19108 6.25855 6.36471 6.37591 6.51295 6.58779 6.66789 6.78867 7.22203 7.35913 7.55182 7.74093 7.97910 8.41164 9.04678 9.70827 10.60136 11.40212 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025298 B = 0.003481 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.554202 B = 8042.771691 C = 8916.032893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.080 0.920 9 N -0.613 5.613 10 C 0.128 3.872 11 C -0.153 4.153 12 C 0.129 3.871 13 N -0.717 5.717 14 C 0.548 3.452 15 O -0.553 6.553 16 C -0.175 4.175 17 C -0.077 4.077 18 C -0.095 4.095 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.082 4.082 23 C 0.169 3.831 24 H 0.253 0.747 25 H 0.045 0.955 26 H 0.036 0.964 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.402 0.598 31 H 0.124 0.876 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.106 -14.345 6.310 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.349 4.349 8 H 0.098 0.902 9 N -0.339 5.339 10 C 0.002 3.998 11 C -0.173 4.173 12 C 0.005 3.995 13 N -0.368 5.368 14 C 0.336 3.664 15 O -0.433 6.433 16 C -0.178 4.178 17 C -0.097 4.097 18 C -0.132 4.132 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.119 4.119 23 C 0.043 3.957 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.238 0.762 31 H 0.142 0.858 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.045 0.955 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.795 -14.478 5.668 20.136 hybrid contribution 0.423 1.273 0.107 1.346 sum -12.372 -13.205 5.775 18.994 Atomic orbital electron populations 1.69821 1.05004 1.25173 1.56907 1.24778 0.95687 0.97509 1.02563 0.86051 0.78754 0.83737 0.77254 1.20474 1.21757 1.21709 1.19088 0.90328 0.82018 1.43511 0.90205 1.45992 1.02466 0.99300 1.86163 1.22486 0.93998 0.86451 0.96886 1.23796 0.98238 0.94797 1.00503 1.21453 0.83675 0.97938 0.96395 1.46052 1.22394 1.29768 1.38568 1.18417 0.84030 0.80789 0.83133 1.90759 1.74665 1.46491 1.31381 1.21273 0.95924 0.99756 1.00814 1.23287 0.93786 0.95310 0.97322 1.20943 0.92918 0.99281 1.00078 1.21266 0.98366 0.94950 1.00619 1.21137 0.97618 0.96876 0.99982 1.21406 0.93563 0.98247 1.02289 1.20891 0.98550 0.96688 0.95799 1.22346 0.88083 0.88455 0.96768 0.93737 0.93660 0.94636 0.89269 0.91973 0.91412 0.76229 0.85789 0.90923 0.90399 0.91590 0.91600 0.92127 0.92221 0.91473 0.91163 0.90352 0.91064 0.95503 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.28 11.39 55.49 0.63 -26.65 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.61 -15.80 3.70 -177.70 -0.66 -16.46 16 10 C 0.13 2.62 8.51 -2.96 -0.03 2.59 16 11 C -0.15 -2.78 3.93 -89.70 -0.35 -3.13 16 12 C 0.13 2.09 5.51 -4.05 -0.02 2.07 16 13 N -0.72 -10.38 5.51 -61.49 -0.34 -10.72 16 14 C 0.55 8.34 7.75 -12.66 -0.10 8.24 16 15 O -0.55 -10.35 16.18 5.27 0.09 -10.27 16 16 C -0.17 -2.05 5.09 -102.53 -0.52 -2.57 16 17 C -0.08 -0.82 8.92 -35.81 -0.32 -1.14 16 18 C -0.09 -0.72 5.61 -27.52 -0.15 -0.87 16 19 C -0.11 -0.85 5.66 -27.33 -0.15 -1.00 16 20 C -0.12 -0.89 5.28 -27.97 -0.15 -1.04 16 21 C -0.12 -1.06 5.68 -27.05 -0.15 -1.21 16 22 C -0.08 -0.76 5.41 -27.23 -0.15 -0.91 16 23 C 0.17 3.91 7.08 -2.85 -0.02 3.89 16 24 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.20 7.88 -51.93 -0.41 0.79 16 30 H 0.40 5.10 6.26 -40.82 -0.26 4.84 16 31 H 0.12 1.45 7.44 -52.49 -0.39 1.06 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.54 6.75 -51.93 -0.35 0.19 16 34 H 0.07 0.56 7.85 -51.93 -0.41 0.15 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.40 7.88 -51.93 -0.41 -0.01 16 38 H 0.07 0.71 7.85 -51.93 -0.41 0.30 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.62 6.74 -51.93 -0.35 0.27 16 41 H 0.07 0.65 5.99 -51.93 -0.31 0.34 16 42 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 43 H 0.07 1.82 7.16 -51.93 -0.37 1.45 16 LS Contribution 339.23 15.07 5.11 5.11 Total: -1.00 -32.80 339.23 -9.57 -42.36 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.00 Total: 1.32 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -2.37 Total: -1.87 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.37 Total: -53.83 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.80 -9.57 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031631061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.049 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds