Wall clock time and date at job start Tue Mar 31 2020 00:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 119.99815 * 2 1 4 4 H 1.48505 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47266 * 299.99362 * 3 2 1 6 6 H 1.48499 * 109.47485 * 59.99960 * 3 2 1 7 7 C 1.38814 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00262 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99686 * 0.02562 * 7 2 1 10 10 C 1.47581 * 134.49218 * 180.02562 * 9 7 2 11 11 C 1.53950 * 86.11751 * 155.35412 * 10 9 7 12 12 C 1.52992 * 113.74144 * 137.95167 * 11 10 9 13 13 N 1.46499 * 109.47267 * 176.92783 * 12 11 10 14 14 C 1.34784 * 119.99971 * 180.02562 * 13 12 11 15 15 O 1.21605 * 119.99806 * 359.72704 * 14 13 12 16 16 C 1.47099 * 119.99647 * 179.97438 * 14 13 12 17 17 C 1.31559 * 119.85105 * 180.02562 * 16 14 13 18 18 C 1.51409 * 120.29459 * 179.97438 * 17 16 14 19 19 C 1.53031 * 108.57517 * 71.58308 * 18 17 16 20 20 C 1.51779 * 110.81139 * 274.29237 * 19 18 17 21 21 C 1.51775 * 113.84458 * 66.93969 * 20 19 18 22 22 C 1.51410 * 119.85678 * 359.72744 * 16 14 13 23 23 C 1.47812 * 134.45739 * 359.86385 * 9 7 2 24 24 H 0.97003 * 120.00483 * 0.02562 * 1 2 3 25 25 H 1.08998 * 113.76700 * 41.06017 * 10 9 7 26 26 H 1.08994 * 113.76896 * 269.65921 * 10 9 7 27 27 H 1.08997 * 113.74146 * 269.15894 * 11 10 9 28 28 H 1.09004 * 109.47330 * 56.92686 * 12 11 10 29 29 H 1.09005 * 109.47124 * 296.92890 * 12 11 10 30 30 H 0.96999 * 119.99984 * 359.97438 * 13 12 11 31 31 H 1.08001 * 119.85374 * 359.95476 * 17 16 14 32 32 H 1.09002 * 109.62193 * 191.31305 * 18 17 16 33 33 H 1.09001 * 109.61428 * 311.67475 * 18 17 16 34 34 H 1.09003 * 109.20973 * 34.63793 * 19 18 17 35 35 H 1.09003 * 109.21111 * 153.99466 * 19 18 17 36 36 H 1.09002 * 108.60991 * 188.07001 * 20 19 18 37 37 H 1.09000 * 108.60825 * 305.95232 * 20 19 18 38 38 H 1.09001 * 109.20742 * 53.40228 * 21 20 19 39 39 H 1.09002 * 109.21335 * 172.76302 * 21 20 19 40 40 H 1.08999 * 109.61878 * 228.16170 * 22 16 14 41 41 H 1.09002 * 109.61739 * 348.70426 * 22 16 14 42 42 H 1.08991 * 113.77048 * 90.38142 * 23 9 7 43 43 H 1.09002 * 113.83635 * 318.91933 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7202 -3.8101 0.0015 11 6 0.3467 -4.0827 0.6410 12 6 -0.3634 -5.3136 0.0742 13 7 -1.6205 -5.5275 0.7953 14 6 -2.4190 -6.5621 0.4655 15 8 -2.0983 -7.3149 -0.4340 16 6 -3.6810 -6.7771 1.1901 17 6 -4.4580 -7.7881 0.8661 18 6 -5.7588 -8.0192 1.6056 19 6 -6.7524 -6.9296 1.1965 20 6 -6.5713 -5.6870 2.0490 21 6 -5.2502 -4.9750 1.8228 22 6 -4.0768 -5.8380 2.3099 23 6 -0.1057 -2.7571 0.0026 24 1 -0.4851 0.8400 -0.0004 25 1 2.5620 -4.0320 0.6575 26 1 1.8328 -4.2355 -0.9957 27 1 0.3583 -4.0631 1.7308 28 1 0.2762 -6.1883 0.1916 29 1 -0.5736 -5.1567 -0.9838 30 1 -1.8779 -4.9251 1.5107 31 1 -4.1668 -8.4560 0.0689 32 1 -6.1603 -8.9980 1.3430 33 1 -5.5822 -7.9725 2.6802 34 1 -6.5919 -6.6727 0.1494 35 1 -7.7681 -7.3049 1.3219 36 1 -7.3826 -4.9930 1.8291 37 1 -6.6347 -5.9732 3.0988 38 1 -5.1303 -4.7710 0.7588 39 1 -5.2522 -4.0326 2.3706 40 1 -4.3823 -6.4164 3.1818 41 1 -3.2316 -5.2001 2.5684 42 1 -0.5311 -2.8723 -0.9943 43 1 -0.7188 -2.1400 0.6594 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031631061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:59 Heat of formation + Delta-G solvation = -6.580215 kcal Electronic energy + Delta-G solvation = -21590.344323 eV Core-core repulsion = 18442.847825 eV Total energy + Delta-G solvation = -3147.496498 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.17487 -39.80318 -38.75259 -35.84068 -34.23427 -33.48998 -32.77202 -30.54004 -27.84930 -26.60068 -26.45114 -25.12127 -23.75125 -22.25829 -21.22935 -20.88006 -19.18796 -18.71729 -18.14611 -17.30706 -16.99277 -16.39956 -16.00470 -15.79312 -15.63566 -15.26286 -14.82526 -14.59819 -14.46157 -14.17058 -13.90350 -13.76124 -13.32304 -13.12468 -12.92397 -12.87875 -12.58578 -12.52362 -12.22830 -12.08178 -11.81768 -11.59313 -11.56713 -11.50687 -11.30669 -11.28792 -10.90213 -10.79810 -10.19524 -9.85210 -8.93062 -7.91410 -5.24913 0.46355 1.45396 1.46424 1.56662 2.21218 2.31868 2.46880 3.29292 3.37728 3.65008 3.74435 3.80747 3.99548 4.03929 4.13613 4.17518 4.25743 4.33337 4.48768 4.57330 4.61226 4.74730 4.78535 4.81981 4.84453 4.88055 4.91404 4.97756 5.07777 5.24198 5.24842 5.29161 5.31671 5.35831 5.41134 5.52827 5.53594 5.58560 5.62771 5.69661 5.92786 6.57344 6.91481 7.22276 7.59791 8.55496 9.25682 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025298 B = 0.003481 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.554202 B = 8042.771691 C = 8916.032893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.236 4.236 8 H 0.084 0.916 9 N -0.645 5.645 10 C 0.126 3.874 11 C -0.115 4.115 12 C 0.141 3.859 13 N -0.712 5.712 14 C 0.543 3.457 15 O -0.595 6.595 16 C -0.190 4.190 17 C -0.065 4.065 18 C -0.090 4.090 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.076 4.076 23 C 0.166 3.834 24 H 0.248 0.752 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.411 0.589 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.009 0.991 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.567 -15.260 7.914 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.365 4.365 8 H 0.102 0.898 9 N -0.371 5.371 10 C 0.001 3.999 11 C -0.135 4.135 12 C 0.016 3.984 13 N -0.363 5.363 14 C 0.334 3.666 15 O -0.478 6.478 16 C -0.193 4.193 17 C -0.085 4.085 18 C -0.127 4.127 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.113 4.113 23 C 0.041 3.959 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.123 0.877 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.249 0.751 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.118 0.882 41 H 0.088 0.912 42 H 0.027 0.973 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.245 -15.410 7.293 21.589 hybrid contribution 0.560 1.487 -0.448 1.651 sum -12.685 -13.923 6.845 20.040 Atomic orbital electron populations 1.70003 1.06416 1.25546 1.58234 1.25631 0.96606 1.00861 1.02955 0.85001 0.78182 0.79336 0.76742 1.19000 1.22130 1.21583 1.19488 0.90894 0.83426 1.42645 0.89850 1.46407 1.03736 1.00706 1.86279 1.22689 0.95694 0.83558 0.97945 1.23403 0.96378 0.92860 1.00835 1.21197 0.84518 0.97253 0.95432 1.45974 1.21832 1.29940 1.38554 1.19014 0.84904 0.80017 0.82694 1.90732 1.75789 1.47943 1.33329 1.21244 0.94758 1.01297 1.02040 1.23525 0.94653 0.93954 0.96366 1.21019 0.91010 1.00201 1.00471 1.21268 0.99335 0.94896 0.99573 1.21140 0.96591 0.96846 1.00960 1.21413 0.94575 0.98755 1.00838 1.20913 0.98576 0.96351 0.95482 1.22252 0.87002 0.90880 0.95790 0.94255 0.91802 0.93654 0.87713 0.90671 0.93143 0.75087 0.87422 0.89311 0.88797 0.93294 0.89610 0.91788 0.90554 0.93775 0.90770 0.88210 0.91174 0.97278 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.65 11.39 21.65 0.25 -57.40 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.98 45.93 29.55 68.60 2.03 47.96 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.24 -13.40 10.70 84.03 0.90 -12.50 16 8 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 9 N -0.64 -33.36 3.70 -716.11 -2.65 -36.02 16 10 C 0.13 5.01 8.51 86.49 0.74 5.75 16 11 C -0.12 -4.08 3.93 -10.14 -0.04 -4.12 16 12 C 0.14 4.46 5.51 86.38 0.48 4.94 16 13 N -0.71 -20.32 5.51 -466.72 -2.57 -22.90 16 14 C 0.54 16.53 7.75 86.57 0.67 17.20 16 15 O -0.59 -22.62 16.18 -4.05 -0.07 -22.69 16 16 C -0.19 -4.31 5.09 -17.88 -0.09 -4.40 16 17 C -0.07 -1.31 8.92 25.34 0.23 -1.08 16 18 C -0.09 -1.12 5.61 30.08 0.17 -0.95 16 19 C -0.11 -1.41 5.66 30.20 0.17 -1.24 16 20 C -0.12 -1.49 5.28 29.79 0.16 -1.33 16 21 C -0.12 -1.99 5.68 30.39 0.17 -1.81 16 22 C -0.08 -1.29 5.41 30.27 0.16 -1.12 16 23 C 0.17 7.86 7.08 86.44 0.61 8.47 16 24 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 25 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 27 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 28 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.05 1.80 7.88 -2.38 -0.02 1.78 16 30 H 0.41 10.14 6.26 -92.71 -0.58 9.56 16 31 H 0.11 2.52 7.44 -2.91 -0.02 2.49 16 32 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 0.94 6.75 -2.39 -0.02 0.92 16 34 H 0.05 0.78 7.85 -2.39 -0.02 0.76 16 35 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.74 7.88 -2.39 -0.02 0.72 16 38 H 0.04 0.93 7.85 -2.39 -0.02 0.92 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.10 1.27 6.74 -2.39 -0.02 1.25 16 41 H 0.07 1.18 5.99 -2.39 -0.01 1.17 16 42 H 0.01 0.47 7.92 -2.39 -0.02 0.45 16 43 H 0.05 2.40 7.16 -2.39 -0.02 2.39 16 Total: -1.00 -71.82 339.23 2.18 -69.63 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.41 Total: 17.04 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 4.79 Total: 4.37 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -4.98 Total: -116.31 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.07 Total: -22.69 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -71.82 2.18 -69.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031631061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.053 kcal (2) G-P(sol) polarization free energy of solvation -71.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds