Wall clock time and date at job start Tue Mar 31 2020 00:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00605 * 2 1 4 4 H 1.48494 * 109.47046 * 274.98560 * 3 2 1 5 5 H 1.48497 * 109.46637 * 34.98688 * 3 2 1 6 6 H 1.48494 * 109.46988 * 154.98220 * 3 2 1 7 7 C 1.38821 * 119.99609 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99731 * 186.75278 * 7 2 1 9 9 N 1.36933 * 119.99896 * 6.75868 * 7 2 1 10 10 C 1.47066 * 136.05657 * 176.30395 * 9 7 2 11 11 C 1.53494 * 88.05012 * 207.12034 * 10 9 7 12 12 C 1.52998 * 114.20887 * 220.37416 * 11 10 9 13 13 N 1.46506 * 109.46839 * 185.00186 * 12 11 10 14 14 C 1.34778 * 119.99700 * 180.02562 * 13 12 11 15 15 O 1.21287 * 120.00115 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00129 * 179.97438 * 14 13 12 17 17 H 1.08999 * 110.05475 * 22.90199 * 16 14 13 18 18 C 1.54383 * 110.07511 * 144.39134 * 16 14 13 19 19 C 1.54925 * 104.23065 * 142.77988 * 18 16 14 20 20 C 1.54992 * 102.81952 * 322.28531 * 19 18 16 21 21 C 1.53488 * 110.07264 * 261.41676 * 16 14 13 22 22 C 1.52569 * 121.04854 * 96.56479 * 21 16 14 23 23 C 1.52557 * 121.08420 * 24.85434 * 21 16 14 24 24 C 1.47064 * 136.06048 * 356.34790 * 9 7 2 25 25 H 0.97007 * 119.99354 * 359.97438 * 1 2 3 26 26 H 1.08996 * 113.47135 * 321.93028 * 10 9 7 27 27 H 1.09006 * 113.46506 * 92.31626 * 10 9 7 28 28 H 1.09005 * 114.20530 * 87.54944 * 11 10 9 29 29 H 1.08994 * 109.47553 * 304.99750 * 12 11 10 30 30 H 1.08992 * 109.47295 * 65.00446 * 12 11 10 31 31 H 0.96994 * 120.00538 * 0.02562 * 13 12 11 32 32 H 1.09008 * 110.48175 * 261.46785 * 18 16 14 33 33 H 1.09006 * 110.48031 * 24.09308 * 18 16 14 34 34 H 1.09008 * 110.73831 * 80.61077 * 19 18 16 35 35 H 1.08994 * 110.74602 * 203.76920 * 19 18 16 36 36 H 1.08992 * 110.51218 * 156.21252 * 20 19 18 37 37 H 1.08998 * 110.50706 * 278.92979 * 20 19 18 38 38 H 1.09004 * 117.51459 * 356.97326 * 22 21 16 39 39 H 1.09000 * 117.51051 * 142.06165 * 22 21 16 40 40 H 1.08998 * 117.50725 * 217.87760 * 23 21 16 41 41 H 1.09003 * 117.50848 * 2.97190 * 23 21 16 42 42 H 1.09008 * 113.47081 * 267.63289 * 24 9 7 43 43 H 1.09001 * 113.46879 * 38.00991 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3925 2.1071 -1.3947 5 1 1.5045 2.6198 0.8028 6 1 3.5965 1.4118 0.5921 7 6 2.0102 -1.2023 -0.0005 8 1 3.0845 -1.2056 0.1094 9 7 1.3326 -2.3839 -0.1406 10 6 1.6941 -3.8049 -0.2546 11 6 0.3915 -4.0195 -1.0377 12 6 -0.3461 -5.3129 -0.6860 13 7 -1.5024 -5.4718 -1.5715 14 6 -2.3057 -6.5466 -1.4445 15 8 -2.0712 -7.3823 -0.5974 16 6 -3.4954 -6.7098 -2.3549 17 1 -3.3449 -6.1408 -3.2723 18 6 -3.7082 -8.2026 -2.6862 19 6 -5.2481 -8.3696 -2.7195 20 6 -5.7190 -7.4474 -1.5663 21 6 -4.7711 -6.2363 -1.6447 22 6 -5.3170 -4.8285 -1.8633 23 6 -4.7097 -5.2158 -0.5124 24 6 -0.0770 -2.7905 -0.2441 25 1 -0.4849 0.8402 0.0004 26 1 2.5913 -3.9782 -0.8487 27 1 1.7157 -4.3254 0.7029 28 1 0.4822 -3.8506 -2.1108 29 1 0.3270 -6.1609 -0.8118 30 1 -0.6847 -5.2682 0.3491 31 1 -1.6898 -4.8037 -2.2492 32 1 -3.2774 -8.4427 -3.6583 33 1 -3.2731 -8.8315 -1.9094 34 1 -5.6524 -8.0315 -3.6737 35 1 -5.5283 -9.4054 -2.5283 36 1 -6.7511 -7.1348 -1.7244 37 1 -5.6148 -7.9529 -0.6063 38 1 -4.7405 -4.1582 -2.5009 39 1 -6.3994 -4.7103 -1.9134 40 1 -5.3927 -5.3524 0.3260 41 1 -3.7337 -4.8003 -0.2616 42 1 -0.5282 -3.0411 0.7160 43 1 -0.6859 -2.1007 -0.8285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031766270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:13 Heat of formation + Delta-G solvation = 31.801518 kcal Electronic energy + Delta-G solvation = -21852.297838 eV Core-core repulsion = 18706.465697 eV Total energy + Delta-G solvation = -3145.832141 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.45255 -38.54886 -37.68454 -34.57320 -34.04577 -32.22318 -29.97886 -28.47658 -26.24393 -25.42135 -24.58877 -22.56231 -22.26048 -21.21186 -20.50636 -19.48076 -18.49875 -16.93756 -16.69838 -16.03487 -15.78897 -15.14266 -15.00973 -14.71868 -14.26716 -13.93962 -13.65766 -13.28917 -13.01294 -12.78013 -12.61461 -12.34013 -11.74402 -11.54012 -11.44906 -11.29435 -11.23524 -11.08501 -10.99548 -10.80044 -10.75643 -10.59954 -10.32935 -10.15750 -9.94898 -9.79413 -9.40992 -9.25512 -8.80461 -8.75575 -6.91263 -5.80198 -3.11467 2.76801 3.28186 3.37684 3.42481 3.44717 3.75937 4.21767 4.43331 4.45689 4.71396 4.74460 4.93639 5.07315 5.09209 5.22860 5.26556 5.27329 5.37540 5.44761 5.58261 5.62763 5.66733 5.67628 5.74980 5.84217 5.85752 5.92083 5.94971 6.02899 6.04698 6.09612 6.21116 6.23936 6.38835 6.52598 6.64440 6.76519 7.18018 7.32952 7.51458 7.70681 7.95032 8.40442 9.01207 9.67821 10.61950 11.37699 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029459 B = 0.003564 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.236315 B = 7855.544251 C = 8511.238196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.611 5.611 10 C 0.128 3.872 11 C -0.159 4.159 12 C 0.133 3.867 13 N -0.723 5.723 14 C 0.519 3.481 15 O -0.543 6.543 16 C -0.077 4.077 17 H 0.090 0.910 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.086 4.086 21 C -0.119 4.119 22 C -0.164 4.164 23 C -0.168 4.168 24 C 0.161 3.839 25 H 0.253 0.747 26 H 0.041 0.959 27 H 0.034 0.966 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.400 0.600 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.025 0.975 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.306 -14.337 -7.161 19.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.336 5.336 10 C 0.001 3.999 11 C -0.179 4.179 12 C 0.009 3.991 13 N -0.374 5.374 14 C 0.305 3.695 15 O -0.421 6.421 16 C -0.099 4.099 17 H 0.108 0.892 18 C -0.149 4.149 19 C -0.157 4.157 20 C -0.123 4.123 21 C -0.120 4.120 22 C -0.201 4.201 23 C -0.205 4.205 24 C 0.036 3.964 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.235 0.765 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.042 0.958 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.050 -14.545 -6.493 19.386 hybrid contribution 0.415 1.424 -0.135 1.489 sum -10.635 -13.121 -6.629 18.144 Atomic orbital electron populations 1.69844 1.05040 1.25335 1.56388 1.24804 0.95682 0.97544 1.02368 0.86085 0.78657 0.83395 0.77556 1.21514 1.21696 1.20579 1.18957 0.90674 0.81553 1.43428 0.90091 1.45570 1.02894 0.99698 1.85486 1.22303 0.94474 0.87046 0.96047 1.23610 0.99022 0.94620 1.00650 1.21339 0.86222 0.97655 0.93847 1.46181 1.28700 1.24565 1.37910 1.20451 0.83227 0.81210 0.84596 1.90659 1.72840 1.42536 1.36045 1.21417 0.91813 0.98930 0.97711 0.89223 1.22352 0.96562 0.93755 1.02210 1.22441 0.95250 0.99483 0.98532 1.21881 0.97374 0.93885 0.99174 1.21530 0.96040 0.91189 1.03245 1.23051 1.00829 0.96121 1.00115 1.23021 1.03274 1.01986 0.92170 1.22184 0.88804 0.90143 0.95304 0.93661 0.94033 0.94802 0.88936 0.91975 0.91505 0.76542 0.91314 0.89643 0.91394 0.91262 0.91520 0.90946 0.88460 0.88587 0.88611 0.88226 0.95768 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.18 11.53 55.49 0.64 -26.54 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.08 29.56 -169.99 -5.02 17.06 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.22 -6.18 10.73 -15.06 -0.16 -6.34 16 8 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 9 N -0.61 -15.73 3.78 -184.58 -0.70 -16.43 16 10 C 0.13 2.61 8.26 -8.52 -0.07 2.54 16 11 C -0.16 -2.84 4.11 -90.05 -0.37 -3.21 16 12 C 0.13 2.08 5.59 -4.04 -0.02 2.06 16 13 N -0.72 -9.85 5.42 -60.30 -0.33 -10.18 16 14 C 0.52 7.35 5.51 -10.99 -0.06 7.29 16 15 O -0.54 -9.65 15.85 5.55 0.09 -9.57 16 16 C -0.08 -0.85 3.16 -90.80 -0.29 -1.13 16 17 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 18 C -0.11 -1.11 6.33 -24.99 -0.16 -1.27 16 19 C -0.12 -0.99 6.91 -24.66 -0.17 -1.16 16 20 C -0.09 -0.80 6.59 -25.16 -0.17 -0.96 16 21 C -0.12 -1.27 2.26 -154.19 -0.35 -1.62 16 22 C -0.16 -1.62 10.24 -26.91 -0.28 -1.90 16 23 C -0.17 -1.98 9.64 -26.91 -0.26 -2.24 16 24 C 0.16 3.71 7.00 -8.46 -0.06 3.65 16 25 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 28 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.14 7.81 -51.93 -0.41 0.74 16 31 H 0.40 4.75 8.44 -40.82 -0.34 4.40 16 32 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.08 1.03 6.97 -51.93 -0.36 0.67 16 34 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.10 1.38 7.19 -51.93 -0.37 1.01 16 42 H 0.02 0.58 7.87 -51.92 -0.41 0.17 16 43 H 0.07 1.76 7.12 -51.93 -0.37 1.39 16 LS Contribution 346.57 15.07 5.22 5.22 Total: -1.00 -32.40 346.57 -9.90 -42.30 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.30 Total: 2.73 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -2.50 Total: -4.59 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.38 Total: -53.15 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.40 -9.90 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031766270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.105 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds