Wall clock time and date at job start Tue Mar 31 2020 00:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00605 * 2 1 4 4 H 1.48494 * 109.47046 * 274.98560 * 3 2 1 5 5 H 1.48497 * 109.46637 * 34.98688 * 3 2 1 6 6 H 1.48494 * 109.46988 * 154.98220 * 3 2 1 7 7 C 1.38821 * 119.99609 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99731 * 186.75278 * 7 2 1 9 9 N 1.36933 * 119.99896 * 6.75868 * 7 2 1 10 10 C 1.47066 * 136.05657 * 176.30395 * 9 7 2 11 11 C 1.53494 * 88.05012 * 207.12034 * 10 9 7 12 12 C 1.52998 * 114.20887 * 220.37416 * 11 10 9 13 13 N 1.46506 * 109.46839 * 185.00186 * 12 11 10 14 14 C 1.34778 * 119.99700 * 180.02562 * 13 12 11 15 15 O 1.21287 * 120.00115 * 359.97438 * 14 13 12 16 16 C 1.50694 * 120.00129 * 179.97438 * 14 13 12 17 17 H 1.08999 * 110.05475 * 22.90199 * 16 14 13 18 18 C 1.54383 * 110.07511 * 144.39134 * 16 14 13 19 19 C 1.54925 * 104.23065 * 142.77988 * 18 16 14 20 20 C 1.54992 * 102.81952 * 322.28531 * 19 18 16 21 21 C 1.53488 * 110.07264 * 261.41676 * 16 14 13 22 22 C 1.52569 * 121.04854 * 96.56479 * 21 16 14 23 23 C 1.52557 * 121.08420 * 24.85434 * 21 16 14 24 24 C 1.47064 * 136.06048 * 356.34790 * 9 7 2 25 25 H 0.97007 * 119.99354 * 359.97438 * 1 2 3 26 26 H 1.08996 * 113.47135 * 321.93028 * 10 9 7 27 27 H 1.09006 * 113.46506 * 92.31626 * 10 9 7 28 28 H 1.09005 * 114.20530 * 87.54944 * 11 10 9 29 29 H 1.08994 * 109.47553 * 304.99750 * 12 11 10 30 30 H 1.08992 * 109.47295 * 65.00446 * 12 11 10 31 31 H 0.96994 * 120.00538 * 0.02562 * 13 12 11 32 32 H 1.09008 * 110.48175 * 261.46785 * 18 16 14 33 33 H 1.09006 * 110.48031 * 24.09308 * 18 16 14 34 34 H 1.09008 * 110.73831 * 80.61077 * 19 18 16 35 35 H 1.08994 * 110.74602 * 203.76920 * 19 18 16 36 36 H 1.08992 * 110.51218 * 156.21252 * 20 19 18 37 37 H 1.08998 * 110.50706 * 278.92979 * 20 19 18 38 38 H 1.09004 * 117.51459 * 356.97326 * 22 21 16 39 39 H 1.09000 * 117.51051 * 142.06165 * 22 21 16 40 40 H 1.08998 * 117.50725 * 217.87760 * 23 21 16 41 41 H 1.09003 * 117.50848 * 2.97190 * 23 21 16 42 42 H 1.09008 * 113.47081 * 267.63289 * 24 9 7 43 43 H 1.09001 * 113.46879 * 38.00991 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3925 2.1071 -1.3947 5 1 1.5045 2.6198 0.8028 6 1 3.5965 1.4118 0.5921 7 6 2.0102 -1.2023 -0.0005 8 1 3.0845 -1.2056 0.1094 9 7 1.3326 -2.3839 -0.1406 10 6 1.6941 -3.8049 -0.2546 11 6 0.3915 -4.0195 -1.0377 12 6 -0.3461 -5.3129 -0.6860 13 7 -1.5024 -5.4718 -1.5715 14 6 -2.3057 -6.5466 -1.4445 15 8 -2.0712 -7.3823 -0.5974 16 6 -3.4954 -6.7098 -2.3549 17 1 -3.3449 -6.1408 -3.2723 18 6 -3.7082 -8.2026 -2.6862 19 6 -5.2481 -8.3696 -2.7195 20 6 -5.7190 -7.4474 -1.5663 21 6 -4.7711 -6.2363 -1.6447 22 6 -5.3170 -4.8285 -1.8633 23 6 -4.7097 -5.2158 -0.5124 24 6 -0.0770 -2.7905 -0.2441 25 1 -0.4849 0.8402 0.0004 26 1 2.5913 -3.9782 -0.8487 27 1 1.7157 -4.3254 0.7029 28 1 0.4822 -3.8506 -2.1108 29 1 0.3270 -6.1609 -0.8118 30 1 -0.6847 -5.2682 0.3491 31 1 -1.6898 -4.8037 -2.2492 32 1 -3.2774 -8.4427 -3.6583 33 1 -3.2731 -8.8315 -1.9094 34 1 -5.6524 -8.0315 -3.6737 35 1 -5.5283 -9.4054 -2.5283 36 1 -6.7511 -7.1348 -1.7244 37 1 -5.6148 -7.9529 -0.6063 38 1 -4.7405 -4.1582 -2.5009 39 1 -6.3994 -4.7103 -1.9134 40 1 -5.3927 -5.3524 0.3260 41 1 -3.7337 -4.8003 -0.2616 42 1 -0.5282 -3.0411 0.7160 43 1 -0.6859 -2.1007 -0.8285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031766270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:12 Heat of formation + Delta-G solvation = 11.797625 kcal Electronic energy + Delta-G solvation = -21853.165272 eV Core-core repulsion = 18706.465697 eV Total energy + Delta-G solvation = -3146.699575 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.48642 -40.09159 -38.86258 -35.81933 -34.96452 -34.21737 -31.21210 -29.90945 -27.65094 -26.53288 -26.34647 -23.98209 -23.40306 -22.23826 -21.45939 -20.93803 -19.62948 -18.76034 -17.93231 -17.18445 -16.99849 -16.73269 -16.17361 -15.82460 -15.68335 -15.43158 -14.99751 -14.56256 -14.32971 -14.13707 -13.61836 -13.41781 -13.35378 -13.06602 -12.91060 -12.67200 -12.52984 -12.39727 -12.26396 -11.94123 -11.87539 -11.78869 -11.69697 -11.49724 -11.17511 -11.14709 -11.01172 -10.84227 -10.40354 -10.03873 -8.96198 -7.94040 -5.26931 1.45166 1.47164 1.56018 1.64877 2.18982 2.45814 2.85827 3.28807 3.40756 3.41604 3.64575 3.66473 3.87377 3.90649 4.05914 4.12251 4.29394 4.32742 4.36566 4.49383 4.57107 4.70685 4.75750 4.77309 4.80174 4.81847 4.85318 4.94390 5.02840 5.05519 5.08398 5.17416 5.20660 5.21890 5.23123 5.29384 5.42373 5.49268 5.53407 5.61907 5.90238 6.59447 6.88300 7.28073 7.57122 8.58164 9.23908 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029459 B = 0.003564 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.236315 B = 7855.544251 C = 8511.238196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.065 4.065 3 Si 0.981 3.019 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.234 4.234 8 H 0.085 0.915 9 N -0.644 5.644 10 C 0.125 3.875 11 C -0.118 4.118 12 C 0.146 3.854 13 N -0.717 5.717 14 C 0.519 3.481 15 O -0.583 6.583 16 C -0.076 4.076 17 H 0.114 0.886 18 C -0.112 4.112 19 C -0.112 4.112 20 C -0.087 4.087 21 C -0.120 4.120 22 C -0.146 4.146 23 C -0.194 4.194 24 C 0.159 3.841 25 H 0.249 0.751 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.411 0.589 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.008 0.992 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.626 -14.980 -9.048 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.809 3.191 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.362 4.362 8 H 0.103 0.897 9 N -0.370 5.370 10 C -0.001 4.001 11 C -0.137 4.137 12 C 0.021 3.979 13 N -0.368 5.368 14 C 0.307 3.693 15 O -0.463 6.463 16 C -0.097 4.097 17 H 0.132 0.868 18 C -0.150 4.150 19 C -0.149 4.149 20 C -0.125 4.125 21 C -0.120 4.120 22 C -0.183 4.183 23 C -0.231 4.231 24 C 0.033 3.967 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.125 0.875 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.247 0.753 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.132 0.868 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.026 0.974 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.358 -15.209 -8.401 20.758 hybrid contribution 0.530 1.582 0.513 1.746 sum -10.828 -13.627 -7.888 19.109 Atomic orbital electron populations 1.70029 1.06502 1.25706 1.57768 1.25669 0.96585 1.00927 1.02682 0.85019 0.77721 0.78856 0.77482 1.20989 1.22161 1.19281 1.19364 0.91249 0.82966 1.42631 0.89730 1.45976 1.04255 1.01179 1.85578 1.22487 0.96273 0.84264 0.97030 1.23233 0.96899 0.93187 1.00400 1.21057 0.86918 0.96616 0.93321 1.46101 1.28118 1.24913 1.37680 1.21051 0.83620 0.80311 0.84352 1.90642 1.73887 1.43937 1.37856 1.21533 0.90199 1.00251 0.97747 0.86844 1.22369 0.98033 0.92361 1.02218 1.22443 0.93653 0.99933 0.98875 1.21925 0.98068 0.93400 0.99083 1.21649 0.96268 0.91984 1.02107 1.23134 1.01854 0.95358 0.97931 1.22971 1.02431 1.04178 0.93509 1.22131 0.87664 0.91869 0.94988 0.94196 0.92314 0.93955 0.87498 0.90780 0.93295 0.75293 0.89512 0.92171 0.89509 0.90263 0.89764 0.92365 0.88008 0.86758 0.88575 0.90877 0.97428 0.94017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.55 11.53 21.65 0.25 -57.30 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.98 45.67 29.56 68.60 2.03 47.70 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.23 -13.28 10.73 84.04 0.90 -12.38 16 8 H 0.08 4.58 7.84 -2.91 -0.02 4.56 16 9 N -0.64 -33.38 3.78 -737.90 -2.79 -36.17 16 10 C 0.13 4.98 8.26 83.17 0.69 5.67 16 11 C -0.12 -4.10 4.11 -10.42 -0.04 -4.14 16 12 C 0.15 4.46 5.59 86.38 0.48 4.94 16 13 N -0.72 -18.97 5.42 -463.07 -2.51 -21.48 16 14 C 0.52 14.40 5.51 87.65 0.48 14.89 16 15 O -0.58 -20.91 15.85 -3.05 -0.05 -20.95 16 16 C -0.08 -1.54 3.16 -10.91 -0.03 -1.57 16 17 H 0.11 1.76 8.11 -2.39 -0.02 1.74 16 18 C -0.11 -2.03 6.33 31.72 0.20 -1.82 16 19 C -0.11 -1.54 6.91 31.93 0.22 -1.32 16 20 C -0.09 -1.46 6.59 31.61 0.21 -1.25 16 21 C -0.12 -2.36 2.26 -51.97 -0.12 -2.48 16 22 C -0.15 -2.61 10.24 30.48 0.31 -2.30 16 23 C -0.19 -4.60 9.64 30.48 0.29 -4.31 16 24 C 0.16 7.49 7.00 83.21 0.58 8.07 16 25 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.04 1.64 8.10 -2.38 -0.02 1.62 16 28 H 0.11 3.49 8.14 -2.38 -0.02 3.47 16 29 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.05 1.70 7.81 -2.39 -0.02 1.68 16 31 H 0.41 9.18 8.44 -92.71 -0.78 8.39 16 32 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.06 1.42 6.97 -2.38 -0.02 1.40 16 34 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.11 8.11 -2.39 -0.02 1.09 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.07 2.11 7.19 -2.39 -0.02 2.10 16 42 H 0.01 0.39 7.87 -2.38 -0.02 0.38 16 43 H 0.04 2.18 7.12 -2.39 -0.02 2.16 16 Total: -1.00 -71.28 346.57 1.78 -69.50 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.20 Total: 20.00 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 4.64 Total: -1.30 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -5.05 Total: -114.95 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.05 Total: -20.95 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.28 1.78 -69.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031766270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.300 kcal (2) G-P(sol) polarization free energy of solvation -71.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds