Wall clock time and date at job start Tue Mar 31 2020 00:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99657 * 2 1 4 4 H 1.48510 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47601 * 300.00565 * 3 2 1 6 6 H 1.48505 * 109.47310 * 60.00723 * 3 2 1 7 7 C 1.38814 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99841 * 180.26964 * 7 2 1 9 9 N 1.36936 * 119.99573 * 359.97438 * 7 2 1 10 10 C 1.47057 * 136.06136 * 359.62739 * 9 7 2 11 11 C 1.53756 * 87.89247 * 152.96551 * 10 9 7 12 12 C 1.52997 * 114.09132 * 139.77763 * 11 10 9 13 13 N 1.46501 * 109.46961 * 91.56223 * 12 11 10 14 14 C 1.34780 * 119.99846 * 180.02562 * 13 12 11 15 15 O 1.21275 * 119.99908 * 359.97438 * 14 13 12 16 16 C 1.50694 * 119.99640 * 180.02562 * 14 13 12 17 17 H 1.09001 * 110.05796 * 336.86283 * 16 14 13 18 18 C 1.54392 * 110.06629 * 215.37944 * 16 14 13 19 19 C 1.54923 * 104.22464 * 217.21563 * 18 16 14 20 20 C 1.54992 * 102.81959 * 37.71910 * 19 18 16 21 21 C 1.53481 * 110.07430 * 98.35307 * 16 14 13 22 22 C 1.52547 * 121.08412 * 335.14191 * 21 16 14 23 23 C 1.52566 * 121.05078 * 263.42855 * 21 16 14 24 24 C 1.47068 * 136.05476 * 180.02562 * 9 7 2 25 25 H 0.96996 * 120.00177 * 359.97438 * 1 2 3 26 26 H 1.08998 * 113.46951 * 267.69776 * 10 9 7 27 27 H 1.09001 * 113.47048 * 38.13755 * 10 9 7 28 28 H 1.09000 * 114.39501 * 272.68265 * 11 10 9 29 29 H 1.09000 * 109.47519 * 211.56770 * 12 11 10 30 30 H 1.09008 * 109.47027 * 331.56888 * 12 11 10 31 31 H 0.96998 * 120.00195 * 0.02562 * 13 12 11 32 32 H 1.08995 * 110.48029 * 335.90675 * 18 16 14 33 33 H 1.09007 * 110.48210 * 98.40221 * 18 16 14 34 34 H 1.08998 * 110.74348 * 156.05340 * 19 18 16 35 35 H 1.08998 * 110.74144 * 279.20696 * 19 18 16 36 36 H 1.09001 * 110.51288 * 81.06954 * 20 19 18 37 37 H 1.08993 * 110.51406 * 203.64609 * 20 19 18 38 38 H 1.08992 * 117.51270 * 357.03638 * 22 21 16 39 39 H 1.09004 * 117.50751 * 142.11850 * 22 21 16 40 40 H 1.09001 * 117.51112 * 217.94136 * 23 21 16 41 41 H 1.09004 * 117.51341 * 2.99013 * 23 21 16 42 42 H 1.09006 * 113.46783 * 321.86247 * 24 9 7 43 43 H 1.08996 * 113.46914 * 92.29741 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 0.0039 9 7 1.3256 -2.3880 -0.0005 10 6 -0.0876 -2.7948 0.0066 11 6 0.3412 -4.0920 -0.6989 12 6 -0.3810 -5.3439 -0.1970 13 7 -1.5785 -5.5753 -1.0087 14 6 -2.3767 -6.6293 -0.7470 15 8 -2.1033 -7.3864 0.1601 16 6 -3.6081 -6.8676 -1.5822 17 1 -3.9295 -5.9362 -2.0485 18 6 -4.7417 -7.4390 -0.7036 19 6 -5.4556 -8.4627 -1.6215 20 6 -4.2802 -9.0989 -2.4065 21 6 -3.3186 -7.9228 -2.6585 22 6 -1.8990 -8.1663 -3.1610 23 6 -2.9370 -7.5147 -4.0782 24 6 1.6800 -3.8154 -0.0005 25 1 -0.4850 0.8400 0.0004 26 1 -0.4876 -2.9570 1.0074 27 1 -0.7260 -2.1571 -0.6048 28 1 0.3809 -4.0213 -1.7859 29 1 0.2840 -6.2038 -0.2772 30 1 -0.6697 -5.2038 0.8447 31 1 -1.7969 -4.9699 -1.7344 32 1 -4.3299 -7.9362 0.1745 33 1 -5.4290 -6.6472 -0.4052 34 1 -5.9762 -9.2151 -1.0291 35 1 -6.1469 -7.9591 -2.2971 36 1 -3.7937 -9.8691 -1.8080 37 1 -4.6322 -9.5154 -3.3502 38 1 -1.1081 -7.5302 -2.7636 39 1 -1.6111 -9.1952 -3.3775 40 1 -3.3320 -8.1147 -4.8979 41 1 -2.8296 -6.4497 -4.2843 42 1 2.5479 -4.0472 -0.6180 43 1 1.7457 -4.2463 0.9985 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031766271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:16 Heat of formation + Delta-G solvation = 31.842444 kcal Electronic energy + Delta-G solvation = -21737.257700 eV Core-core repulsion = 18591.427334 eV Total energy + Delta-G solvation = -3145.830366 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.47747 -38.55994 -37.70148 -34.59812 -34.07170 -32.22238 -29.98641 -28.47721 -26.26026 -25.43641 -24.58102 -22.67108 -22.26240 -21.21289 -20.53223 -19.49523 -18.53514 -16.92588 -16.71162 -16.09527 -15.80625 -15.11937 -15.05000 -14.65350 -14.48582 -13.82071 -13.65641 -13.27445 -13.14594 -12.74234 -12.63277 -12.35442 -11.75309 -11.66218 -11.45760 -11.29903 -11.24769 -11.05790 -11.02023 -10.79679 -10.76588 -10.59803 -10.42464 -10.18593 -9.95200 -9.78484 -9.43848 -9.23223 -8.84646 -8.76599 -6.90360 -5.79497 -3.11932 2.76531 3.25607 3.37254 3.42520 3.45146 3.69558 4.17702 4.41475 4.43320 4.65468 4.67878 4.89121 5.04786 5.07485 5.22028 5.26317 5.29116 5.37109 5.42917 5.47974 5.56460 5.65091 5.68205 5.70622 5.80333 5.84259 5.87027 5.91805 5.96324 5.99270 6.05871 6.21366 6.24077 6.38754 6.52600 6.64860 6.76725 7.18814 7.32077 7.52238 7.70713 7.95245 8.40369 9.01455 9.67823 10.61658 11.38109 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032542 B = 0.003238 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.218831 B = 8644.272559 C = 8717.081617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.217 4.217 8 H 0.082 0.918 9 N -0.611 5.611 10 C 0.161 3.839 11 C -0.159 4.159 12 C 0.133 3.867 13 N -0.723 5.723 14 C 0.519 3.481 15 O -0.543 6.543 16 C -0.078 4.078 17 H 0.091 0.909 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.086 4.086 21 C -0.117 4.117 22 C -0.169 4.169 23 C -0.166 4.166 24 C 0.128 3.872 25 H 0.253 0.747 26 H 0.025 0.975 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.401 0.599 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.041 0.959 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.884 -16.721 -7.348 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.345 4.345 8 H 0.100 0.900 9 N -0.337 5.337 10 C 0.035 3.965 11 C -0.179 4.179 12 C 0.009 3.991 13 N -0.373 5.373 14 C 0.305 3.695 15 O -0.421 6.421 16 C -0.100 4.100 17 H 0.109 0.891 18 C -0.149 4.149 19 C -0.157 4.157 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.206 4.206 23 C -0.203 4.203 24 C 0.001 3.999 25 H 0.063 0.937 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.235 0.765 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.059 0.941 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.600 -16.863 -6.672 20.519 hybrid contribution 0.442 1.362 -0.213 1.448 sum -9.157 -15.501 -6.885 19.275 Atomic orbital electron populations 1.69833 1.05032 1.25244 1.56624 1.24805 0.95714 0.97560 1.02465 0.86026 0.78741 0.83591 0.77286 1.20419 1.21657 1.21710 1.18998 0.90192 0.81443 1.43822 0.90042 1.45574 1.02860 0.99316 1.85914 1.22208 0.88871 0.89158 0.96224 1.23656 0.98902 0.94803 1.00505 1.21349 0.85240 0.97507 0.94999 1.46179 1.26452 1.28589 1.36109 1.20434 0.84405 0.80471 0.84154 1.90656 1.73448 1.46225 1.31743 1.21428 0.94172 0.99151 0.95205 0.89077 1.22355 0.95382 0.98718 0.98490 1.22440 0.97014 0.98182 0.98070 1.21881 0.94681 0.95714 1.00030 1.21528 0.97966 0.97709 0.94522 1.22999 0.92042 1.02199 1.03386 1.23056 1.03181 1.01558 0.92460 1.22316 0.94202 0.86728 0.96670 0.93701 0.95714 0.91106 0.88924 0.92040 0.91468 0.76534 0.89625 0.91139 0.91241 0.91335 0.90951 0.91545 0.88465 0.88641 0.88567 0.88494 0.94053 0.94788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.27 11.50 55.49 0.64 -26.63 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.22 -6.14 10.75 -15.06 -0.16 -6.30 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.61 -15.76 3.78 -184.62 -0.70 -16.46 16 10 C 0.16 3.72 6.98 -8.39 -0.06 3.66 16 11 C -0.16 -2.84 4.12 -89.96 -0.37 -3.21 16 12 C 0.13 2.08 5.59 -4.04 -0.02 2.06 16 13 N -0.72 -9.86 5.41 -60.29 -0.33 -10.19 16 14 C 0.52 7.36 5.51 -10.99 -0.06 7.30 16 15 O -0.54 -9.65 15.85 5.56 0.09 -9.57 16 16 C -0.08 -0.86 3.16 -90.80 -0.29 -1.14 16 17 H 0.09 0.87 8.11 -51.93 -0.42 0.45 16 18 C -0.11 -1.15 6.33 -24.99 -0.16 -1.31 16 19 C -0.12 -0.99 6.91 -24.66 -0.17 -1.16 16 20 C -0.09 -0.75 6.59 -25.16 -0.17 -0.92 16 21 C -0.12 -1.15 2.26 -154.19 -0.35 -1.50 16 22 C -0.17 -1.72 9.64 -26.92 -0.26 -1.98 16 23 C -0.17 -1.42 10.24 -26.91 -0.28 -1.69 16 24 C 0.13 2.60 8.25 -8.51 -0.07 2.53 16 25 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.03 0.60 7.87 -51.93 -0.41 0.19 16 27 H 0.07 1.80 7.11 -51.93 -0.37 1.43 16 28 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.15 7.80 -51.92 -0.40 0.75 16 31 H 0.40 4.75 8.45 -40.82 -0.34 4.41 16 32 H 0.09 1.06 6.97 -51.93 -0.36 0.70 16 33 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 38 H 0.10 1.12 7.18 -51.93 -0.37 0.75 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 346.49 15.07 5.22 5.22 Total: -1.00 -32.49 346.49 -9.90 -42.39 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.30 Total: 2.15 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -2.50 Total: -4.01 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.39 Total: -53.27 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.49 -9.90 -42.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031766271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.231 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds