Wall clock time and date at job start Tue Mar 31 2020 00:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99657 * 2 1 4 4 H 1.48510 * 109.47037 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47601 * 300.00565 * 3 2 1 6 6 H 1.48505 * 109.47310 * 60.00723 * 3 2 1 7 7 C 1.38814 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99841 * 180.26964 * 7 2 1 9 9 N 1.36936 * 119.99573 * 359.97438 * 7 2 1 10 10 C 1.47057 * 136.06136 * 359.62739 * 9 7 2 11 11 C 1.53756 * 87.89247 * 152.96551 * 10 9 7 12 12 C 1.52997 * 114.09132 * 139.77763 * 11 10 9 13 13 N 1.46501 * 109.46961 * 91.56223 * 12 11 10 14 14 C 1.34780 * 119.99846 * 180.02562 * 13 12 11 15 15 O 1.21275 * 119.99908 * 359.97438 * 14 13 12 16 16 C 1.50694 * 119.99640 * 180.02562 * 14 13 12 17 17 H 1.09001 * 110.05796 * 336.86283 * 16 14 13 18 18 C 1.54392 * 110.06629 * 215.37944 * 16 14 13 19 19 C 1.54923 * 104.22464 * 217.21563 * 18 16 14 20 20 C 1.54992 * 102.81959 * 37.71910 * 19 18 16 21 21 C 1.53481 * 110.07430 * 98.35307 * 16 14 13 22 22 C 1.52547 * 121.08412 * 335.14191 * 21 16 14 23 23 C 1.52566 * 121.05078 * 263.42855 * 21 16 14 24 24 C 1.47068 * 136.05476 * 180.02562 * 9 7 2 25 25 H 0.96996 * 120.00177 * 359.97438 * 1 2 3 26 26 H 1.08998 * 113.46951 * 267.69776 * 10 9 7 27 27 H 1.09001 * 113.47048 * 38.13755 * 10 9 7 28 28 H 1.09000 * 114.39501 * 272.68265 * 11 10 9 29 29 H 1.09000 * 109.47519 * 211.56770 * 12 11 10 30 30 H 1.09008 * 109.47027 * 331.56888 * 12 11 10 31 31 H 0.96998 * 120.00195 * 0.02562 * 13 12 11 32 32 H 1.08995 * 110.48029 * 335.90675 * 18 16 14 33 33 H 1.09007 * 110.48210 * 98.40221 * 18 16 14 34 34 H 1.08998 * 110.74348 * 156.05340 * 19 18 16 35 35 H 1.08998 * 110.74144 * 279.20696 * 19 18 16 36 36 H 1.09001 * 110.51288 * 81.06954 * 20 19 18 37 37 H 1.08993 * 110.51406 * 203.64609 * 20 19 18 38 38 H 1.08992 * 117.51270 * 357.03638 * 22 21 16 39 39 H 1.09004 * 117.50751 * 142.11850 * 22 21 16 40 40 H 1.09001 * 117.51112 * 217.94136 * 23 21 16 41 41 H 1.09004 * 117.51341 * 2.99013 * 23 21 16 42 42 H 1.09006 * 113.46783 * 321.86247 * 24 9 7 43 43 H 1.08996 * 113.46914 * 92.29741 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 0.0039 9 7 1.3256 -2.3880 -0.0005 10 6 -0.0876 -2.7948 0.0066 11 6 0.3412 -4.0920 -0.6989 12 6 -0.3810 -5.3439 -0.1970 13 7 -1.5785 -5.5753 -1.0087 14 6 -2.3767 -6.6293 -0.7470 15 8 -2.1033 -7.3864 0.1601 16 6 -3.6081 -6.8676 -1.5822 17 1 -3.9295 -5.9362 -2.0485 18 6 -4.7417 -7.4390 -0.7036 19 6 -5.4556 -8.4627 -1.6215 20 6 -4.2802 -9.0989 -2.4065 21 6 -3.3186 -7.9228 -2.6585 22 6 -1.8990 -8.1663 -3.1610 23 6 -2.9370 -7.5147 -4.0782 24 6 1.6800 -3.8154 -0.0005 25 1 -0.4850 0.8400 0.0004 26 1 -0.4876 -2.9570 1.0074 27 1 -0.7260 -2.1571 -0.6048 28 1 0.3809 -4.0213 -1.7859 29 1 0.2840 -6.2038 -0.2772 30 1 -0.6697 -5.2038 0.8447 31 1 -1.7969 -4.9699 -1.7344 32 1 -4.3299 -7.9362 0.1745 33 1 -5.4290 -6.6472 -0.4052 34 1 -5.9762 -9.2151 -1.0291 35 1 -6.1469 -7.9591 -2.2971 36 1 -3.7937 -9.8691 -1.8080 37 1 -4.6322 -9.5154 -3.3502 38 1 -1.1081 -7.5302 -2.7636 39 1 -1.6111 -9.1952 -3.3775 40 1 -3.3320 -8.1147 -4.8979 41 1 -2.8296 -6.4497 -4.2843 42 1 2.5479 -4.0472 -0.6180 43 1 1.7457 -4.2463 0.9985 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031766271.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:15 Heat of formation + Delta-G solvation = 11.839894 kcal Electronic energy + Delta-G solvation = -21738.125075 eV Core-core repulsion = 18591.427334 eV Total energy + Delta-G solvation = -3146.697742 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.48434 -40.08638 -38.85333 -35.82076 -34.95880 -34.21463 -31.20828 -29.90631 -27.65113 -26.52864 -26.33964 -23.97487 -23.37046 -22.24059 -21.48327 -20.92156 -19.63574 -18.75610 -17.92594 -17.20746 -16.99115 -16.72598 -16.09517 -15.88898 -15.63755 -15.51940 -14.83981 -14.69250 -14.32306 -14.05981 -13.66474 -13.42388 -13.33209 -13.06362 -12.91713 -12.65755 -12.53320 -12.36091 -12.24893 -11.95045 -11.85715 -11.80255 -11.67521 -11.51578 -11.15180 -11.13308 -10.99918 -10.90361 -10.38441 -10.03770 -8.95304 -7.93310 -5.27261 1.45139 1.46279 1.56639 1.65174 2.18915 2.45714 2.88391 3.28680 3.41291 3.42886 3.64174 3.67149 3.87964 3.90877 4.06888 4.14020 4.29772 4.32903 4.36240 4.50527 4.56554 4.69689 4.75217 4.79503 4.81989 4.82198 4.85676 4.94924 5.03639 5.06221 5.09387 5.17342 5.20341 5.22270 5.25962 5.29424 5.42762 5.48988 5.52607 5.61896 5.90847 6.59412 6.88732 7.27969 7.57207 8.57917 9.24370 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032542 B = 0.003238 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.218831 B = 8644.272559 C = 8717.081617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.981 3.019 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.232 4.232 8 H 0.086 0.914 9 N -0.644 5.644 10 C 0.158 3.842 11 C -0.117 4.117 12 C 0.145 3.855 13 N -0.717 5.717 14 C 0.519 3.481 15 O -0.583 6.583 16 C -0.076 4.076 17 H 0.109 0.891 18 C -0.115 4.115 19 C -0.112 4.112 20 C -0.086 4.086 21 C -0.125 4.125 22 C -0.186 4.186 23 C -0.146 4.146 24 C 0.125 3.875 25 H 0.249 0.751 26 H 0.010 0.990 27 H 0.042 0.958 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.411 0.589 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.103 0.897 42 H 0.058 0.942 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.177 -17.414 -8.992 22.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.221 1.221 7 C -0.360 4.360 8 H 0.103 0.897 9 N -0.370 5.370 10 C 0.032 3.968 11 C -0.137 4.137 12 C 0.021 3.979 13 N -0.368 5.368 14 C 0.307 3.693 15 O -0.463 6.463 16 C -0.098 4.098 17 H 0.127 0.873 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.223 4.223 23 C -0.182 4.182 24 C -0.001 4.001 25 H 0.058 0.942 26 H 0.028 0.972 27 H 0.061 0.939 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.247 0.753 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.132 0.868 41 H 0.121 0.879 42 H 0.076 0.924 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.882 -17.579 -8.337 21.822 hybrid contribution 0.556 1.528 0.340 1.661 sum -9.326 -16.051 -7.997 20.213 Atomic orbital electron populations 1.70015 1.06474 1.25627 1.58010 1.25669 0.96632 1.00937 1.02823 0.84968 0.78182 0.79132 0.76778 1.18905 1.21542 1.22060 1.19399 0.90779 0.82840 1.42935 0.89673 1.45965 1.04222 1.00759 1.86064 1.22167 0.87672 0.91322 0.95601 1.23272 0.96813 0.93038 1.00537 1.21066 0.86040 0.96535 0.94294 1.46100 1.25826 1.28838 1.36032 1.21036 0.84956 0.79577 0.83736 1.90639 1.74529 1.47564 1.33586 1.21512 0.92511 1.00541 0.95210 0.87285 1.22376 0.95501 0.99484 0.97971 1.22438 0.96919 0.97769 0.97841 1.21901 0.94494 0.95062 1.00828 1.21614 0.98006 0.97852 0.95127 1.22999 0.91959 1.02437 1.04861 1.23143 1.01050 1.02083 0.91960 1.22498 0.96005 0.83892 0.97688 0.94218 0.97214 0.93908 0.87564 0.90998 0.93081 0.75286 0.92249 0.90218 0.90427 0.89655 0.92256 0.89615 0.90151 0.88239 0.86765 0.87893 0.92402 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.57 11.50 21.65 0.25 -57.32 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 3 Si 0.98 45.72 29.55 68.60 2.03 47.75 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.23 -13.11 10.75 84.03 0.90 -12.21 16 8 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 9 N -0.64 -33.33 3.78 -738.01 -2.79 -36.12 16 10 C 0.16 7.42 6.98 83.26 0.58 8.00 16 11 C -0.12 -4.07 4.12 -10.37 -0.04 -4.11 16 12 C 0.15 4.44 5.59 86.38 0.48 4.92 16 13 N -0.72 -18.94 5.41 -463.06 -2.50 -21.44 16 14 C 0.52 14.45 5.51 87.65 0.48 14.93 16 15 O -0.58 -20.93 15.85 -3.01 -0.05 -20.98 16 16 C -0.08 -1.57 3.16 -10.91 -0.03 -1.60 16 17 H 0.11 1.83 8.11 -2.39 -0.02 1.81 16 18 C -0.12 -2.27 6.33 31.72 0.20 -2.07 16 19 C -0.11 -1.61 6.91 31.93 0.22 -1.39 16 20 C -0.09 -1.33 6.59 31.61 0.21 -1.12 16 21 C -0.13 -2.23 2.26 -51.98 -0.12 -2.35 16 22 C -0.19 -3.50 9.64 30.47 0.29 -3.21 16 23 C -0.15 -2.08 10.24 30.48 0.31 -1.76 16 24 C 0.12 4.96 8.25 83.18 0.69 5.64 16 25 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 26 H 0.01 0.50 7.87 -2.39 -0.02 0.48 16 27 H 0.04 2.23 7.11 -2.39 -0.02 2.21 16 28 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.05 1.76 7.80 -2.38 -0.02 1.74 16 31 H 0.41 9.18 8.45 -92.71 -0.78 8.39 16 32 H 0.06 1.49 6.97 -2.39 -0.02 1.47 16 33 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.00 8.11 -2.39 -0.02 0.98 16 38 H 0.08 1.78 7.18 -2.39 -0.02 1.77 16 39 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.11 1.24 8.14 -2.39 -0.02 1.23 16 41 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 2.11 8.14 -2.38 -0.02 2.10 16 43 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 Total: -1.00 -70.97 346.49 1.78 -69.18 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.20 Total: 18.65 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 4.64 Total: 0.27 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -5.04 Total: -114.88 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.05 Total: -20.98 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -70.97 1.78 -69.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031766271.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.022 kcal (2) G-P(sol) polarization free energy of solvation -70.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds