Wall clock time and date at job start Tue Mar 31 2020 00:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00055 * 2 1 4 4 H 1.48504 * 109.47524 * 270.00439 * 3 2 1 5 5 H 1.48500 * 109.47329 * 30.00829 * 3 2 1 6 6 H 1.48505 * 109.46816 * 150.00441 * 3 2 1 7 7 C 1.38813 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.47578 * 134.49569 * 179.97438 * 9 7 2 11 11 C 1.53947 * 86.11835 * 155.36182 * 10 9 7 12 12 C 1.52999 * 113.74326 * 137.95455 * 11 10 9 13 13 N 1.46503 * 109.47139 * 175.00286 * 12 11 10 14 14 C 1.34779 * 119.99560 * 180.02562 * 13 12 11 15 15 O 1.21276 * 120.00234 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99538 * 179.97438 * 14 13 12 17 17 H 1.09005 * 109.76375 * 59.55218 * 16 14 13 18 18 C 1.53304 * 109.61767 * 299.10079 * 16 14 13 19 19 C 1.52879 * 108.57818 * 165.82578 * 18 16 14 20 20 C 1.52717 * 110.15492 * 54.52360 * 19 18 16 21 21 H 1.08998 * 115.39027 * 128.78465 * 20 19 18 22 22 C 1.53647 * 116.02561 * 269.79729 * 20 19 18 23 23 C 1.52064 * 120.51816 * 338.52513 * 20 19 18 24 24 H 1.09001 * 115.92962 * 150.00811 * 23 20 19 25 25 C 1.52076 * 120.02435 * 5.28956 * 23 20 19 26 26 C 1.47587 * 134.49094 * 0.02562 * 9 7 2 27 27 H 0.97003 * 119.99983 * 359.97438 * 1 2 3 28 28 H 1.09004 * 113.76496 * 41.06454 * 10 9 7 29 29 H 1.09000 * 113.77467 * 269.66387 * 10 9 7 30 30 H 1.09000 * 113.74317 * 269.15856 * 11 10 9 31 31 H 1.08998 * 109.46967 * 55.00099 * 12 11 10 32 32 H 1.09001 * 109.47126 * 295.00492 * 12 11 10 33 33 H 0.96993 * 119.99781 * 359.97438 * 13 12 11 34 34 H 1.08994 * 109.61693 * 285.55096 * 18 16 14 35 35 H 1.09000 * 109.62015 * 46.09713 * 18 16 14 36 36 H 1.09003 * 109.35462 * 174.72767 * 19 18 16 37 37 H 1.08994 * 109.35971 * 294.30760 * 19 18 16 38 38 H 1.08996 * 117.54084 * 4.30421 * 22 20 19 39 39 H 1.09005 * 117.53605 * 219.06263 * 22 20 19 40 40 H 1.09003 * 109.26633 * 98.56970 * 25 23 20 41 41 H 1.09002 * 109.26533 * 218.06654 * 25 23 20 42 42 H 1.09000 * 113.76671 * 90.33994 * 26 9 7 43 43 H 1.08997 * 113.76726 * 318.94249 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.7201 -3.8101 -0.0015 11 6 0.3474 -4.0832 0.6398 12 6 -0.3636 -5.3136 0.0728 13 7 -1.5969 -5.5551 0.8257 14 6 -2.3918 -6.5941 0.5014 15 8 -2.0864 -7.3288 -0.4138 16 6 -3.6602 -6.8429 1.2763 17 1 -4.3143 -5.9741 1.2013 18 6 -3.3210 -7.1064 2.7479 19 6 -4.6059 -7.0030 3.5699 20 6 -5.6711 -7.9379 3.0011 21 1 -6.1429 -8.6036 3.7238 22 6 -6.5915 -7.3371 1.9274 23 6 -5.5858 -8.4207 1.5616 24 1 -6.0123 -9.4039 1.3626 25 6 -4.3731 -8.0721 0.7127 26 6 -0.1034 -2.7574 -0.0005 27 1 -0.4850 0.8401 0.0004 28 1 2.5628 -4.0326 0.6531 29 1 1.8311 -4.2347 -0.9992 30 1 0.3606 -4.0646 1.7295 31 1 0.2898 -6.1819 0.1575 32 1 -0.6058 -5.1422 -0.9760 33 1 -1.8410 -4.9677 1.5579 34 1 -2.8989 -8.1058 2.8528 35 1 -2.6028 -6.3643 3.0965 36 1 -4.3969 -7.2799 4.6033 37 1 -4.9723 -5.9770 3.5401 38 1 -6.3809 -6.3208 1.5943 39 1 -7.6451 -7.6154 1.9537 40 1 -3.6838 -8.9164 0.7064 41 1 -4.6961 -7.8639 -0.3073 42 1 -0.5272 -2.8730 -0.9981 43 1 -0.7169 -2.1390 0.6547 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031782318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:07 Heat of formation + Delta-G solvation = 23.079867 kcal Electronic energy + Delta-G solvation = -21540.457721 eV Core-core repulsion = 18394.247381 eV Total energy + Delta-G solvation = -3146.210340 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.48080 -38.83408 -37.87171 -34.41181 -33.39898 -32.12545 -31.01259 -28.87914 -26.31094 -24.89158 -24.69984 -23.37206 -21.98575 -21.43413 -20.31163 -19.03755 -18.63739 -17.35291 -16.70127 -16.00140 -15.54542 -15.32352 -14.88389 -14.57096 -14.15037 -13.94684 -13.86360 -13.62932 -13.26224 -12.86827 -12.65499 -12.37091 -12.21222 -11.72526 -11.43981 -11.34422 -11.32752 -11.19108 -11.00746 -10.80647 -10.71814 -10.57299 -10.01410 -9.98089 -9.87549 -9.75709 -9.54488 -9.39697 -8.81152 -8.77263 -6.88592 -5.77839 -3.09945 2.77665 3.33347 3.38544 3.43332 3.45126 3.52467 4.32892 4.44685 4.47152 4.58071 4.71557 4.84255 4.86117 5.05408 5.16383 5.21666 5.26581 5.31464 5.36151 5.39519 5.52851 5.61078 5.68107 5.72362 5.79728 5.84584 5.88183 5.97620 5.99976 6.07087 6.10775 6.13356 6.25432 6.36726 6.56723 6.65101 6.77404 7.21177 7.34872 7.54459 7.69862 7.97510 8.38799 9.04078 9.70035 10.59379 11.39324 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029812 B = 0.003151 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.986266 B = 8883.267986 C = 9352.606989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.613 5.613 10 C 0.128 3.872 11 C -0.153 4.153 12 C 0.130 3.870 13 N -0.721 5.721 14 C 0.515 3.485 15 O -0.547 6.547 16 C -0.109 4.109 17 H 0.097 0.903 18 C -0.110 4.110 19 C -0.088 4.088 20 C -0.150 4.150 21 H 0.100 0.900 22 C -0.187 4.187 23 C -0.136 4.136 24 H 0.099 0.901 25 C -0.068 4.068 26 C 0.169 3.831 27 H 0.253 0.747 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.401 0.599 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.027 0.973 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.403 -15.833 7.162 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.339 5.339 10 C 0.001 3.999 11 C -0.173 4.173 12 C 0.005 3.995 13 N -0.372 5.372 14 C 0.301 3.699 15 O -0.425 6.425 16 C -0.131 4.131 17 H 0.116 0.884 18 C -0.148 4.148 19 C -0.126 4.126 20 C -0.168 4.168 21 H 0.118 0.882 22 C -0.224 4.224 23 C -0.155 4.155 24 H 0.118 0.882 25 C -0.106 4.106 26 C 0.043 3.957 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.236 0.764 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.124 -15.980 6.502 20.528 hybrid contribution 0.242 1.283 0.151 1.314 sum -10.882 -14.697 6.653 19.460 Atomic orbital electron populations 1.69813 1.05014 1.25306 1.56790 1.24781 0.95690 0.97524 1.02514 0.86119 0.78625 0.83418 0.77596 1.21622 1.21621 1.20620 1.19038 0.90305 0.82027 1.43686 0.90258 1.45942 1.02496 0.99307 1.86116 1.22497 0.94051 0.86473 0.96876 1.23804 0.98197 0.94791 1.00473 1.21446 0.84360 0.97754 0.95893 1.46086 1.24184 1.30223 1.36705 1.20543 0.84950 0.80437 0.83993 1.90677 1.73946 1.47154 1.30739 1.21387 0.95059 1.00741 0.95887 0.88449 1.21584 0.97738 1.02882 0.92587 1.21051 0.93652 0.98877 0.98990 1.22252 1.00545 1.02290 0.91740 0.88171 1.23179 0.96107 0.98812 1.04325 1.21852 0.98516 0.98863 0.96225 0.88240 1.20626 0.94682 0.96925 0.98335 1.22327 0.88124 0.88510 0.96721 0.93677 0.93684 0.94668 0.89246 0.92039 0.91481 0.76444 0.90982 0.91028 0.91175 0.91230 0.88628 0.89087 0.90502 0.90843 0.95568 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.22 11.38 55.49 0.63 -26.59 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.22 -6.28 10.70 -15.06 -0.16 -6.45 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.74 16 9 N -0.61 -15.69 3.70 -177.88 -0.66 -16.35 16 10 C 0.13 2.57 8.50 -2.98 -0.03 2.55 16 11 C -0.15 -2.71 3.94 -89.68 -0.35 -3.07 16 12 C 0.13 2.02 5.53 -4.04 -0.02 2.00 16 13 N -0.72 -9.70 5.35 -60.29 -0.32 -10.02 16 14 C 0.51 7.16 7.15 -10.98 -0.08 7.08 16 15 O -0.55 -9.65 15.92 5.56 0.09 -9.56 16 16 C -0.11 -1.13 2.28 -91.68 -0.21 -1.34 16 17 H 0.10 0.94 7.11 -51.93 -0.37 0.57 16 18 C -0.11 -0.96 5.24 -26.64 -0.14 -1.10 16 19 C -0.09 -0.66 5.83 -26.94 -0.16 -0.82 16 20 C -0.15 -1.16 6.19 -90.91 -0.56 -1.72 16 21 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 22 C -0.19 -1.47 9.66 -26.75 -0.26 -1.73 16 23 C -0.14 -1.16 6.00 -91.92 -0.55 -1.71 16 24 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 25 C -0.07 -0.70 4.59 -27.27 -0.13 -0.83 16 26 C 0.17 3.87 7.07 -2.95 -0.02 3.85 16 27 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.15 7.83 -51.93 -0.41 0.75 16 33 H 0.40 4.63 7.88 -40.82 -0.32 4.31 16 34 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 35 H 0.07 0.59 7.33 -51.93 -0.38 0.21 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 38 H 0.10 0.78 7.26 -51.93 -0.38 0.40 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.87 7.93 -51.93 -0.41 0.45 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.03 0.63 7.89 -51.93 -0.41 0.22 16 43 H 0.07 1.81 7.15 -51.93 -0.37 1.44 16 LS Contribution 341.28 15.07 5.14 5.14 Total: -1.00 -32.35 341.28 -10.13 -42.49 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.23 Total: 1.43 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.76 Total: -3.64 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.35 Total: -52.96 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.35 -10.13 -42.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031782318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.568 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds