Wall clock time and date at job start Tue Mar 31 2020 00:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00055 * 2 1 4 4 H 1.48504 * 109.47524 * 270.00439 * 3 2 1 5 5 H 1.48500 * 109.47329 * 30.00829 * 3 2 1 6 6 H 1.48505 * 109.46816 * 150.00441 * 3 2 1 7 7 C 1.38813 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00309 * 359.97438 * 7 2 1 10 10 C 1.47578 * 134.49569 * 179.97438 * 9 7 2 11 11 C 1.53947 * 86.11835 * 155.36182 * 10 9 7 12 12 C 1.52999 * 113.74326 * 137.95455 * 11 10 9 13 13 N 1.46503 * 109.47139 * 175.00286 * 12 11 10 14 14 C 1.34779 * 119.99560 * 180.02562 * 13 12 11 15 15 O 1.21276 * 120.00234 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99538 * 179.97438 * 14 13 12 17 17 H 1.09005 * 109.76375 * 59.55218 * 16 14 13 18 18 C 1.53304 * 109.61767 * 299.10079 * 16 14 13 19 19 C 1.52879 * 108.57818 * 165.82578 * 18 16 14 20 20 C 1.52717 * 110.15492 * 54.52360 * 19 18 16 21 21 H 1.08998 * 115.39027 * 128.78465 * 20 19 18 22 22 C 1.53647 * 116.02561 * 269.79729 * 20 19 18 23 23 C 1.52064 * 120.51816 * 338.52513 * 20 19 18 24 24 H 1.09001 * 115.92962 * 150.00811 * 23 20 19 25 25 C 1.52076 * 120.02435 * 5.28956 * 23 20 19 26 26 C 1.47587 * 134.49094 * 0.02562 * 9 7 2 27 27 H 0.97003 * 119.99983 * 359.97438 * 1 2 3 28 28 H 1.09004 * 113.76496 * 41.06454 * 10 9 7 29 29 H 1.09000 * 113.77467 * 269.66387 * 10 9 7 30 30 H 1.09000 * 113.74317 * 269.15856 * 11 10 9 31 31 H 1.08998 * 109.46967 * 55.00099 * 12 11 10 32 32 H 1.09001 * 109.47126 * 295.00492 * 12 11 10 33 33 H 0.96993 * 119.99781 * 359.97438 * 13 12 11 34 34 H 1.08994 * 109.61693 * 285.55096 * 18 16 14 35 35 H 1.09000 * 109.62015 * 46.09713 * 18 16 14 36 36 H 1.09003 * 109.35462 * 174.72767 * 19 18 16 37 37 H 1.08994 * 109.35971 * 294.30760 * 19 18 16 38 38 H 1.08996 * 117.54084 * 4.30421 * 22 20 19 39 39 H 1.09005 * 117.53605 * 219.06263 * 22 20 19 40 40 H 1.09003 * 109.26633 * 98.56970 * 25 23 20 41 41 H 1.09002 * 109.26533 * 218.06654 * 25 23 20 42 42 H 1.09000 * 113.76671 * 90.33994 * 26 9 7 43 43 H 1.08997 * 113.76726 * 318.94249 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.7201 -3.8101 -0.0015 11 6 0.3474 -4.0832 0.6398 12 6 -0.3636 -5.3136 0.0728 13 7 -1.5969 -5.5551 0.8257 14 6 -2.3918 -6.5941 0.5014 15 8 -2.0864 -7.3288 -0.4138 16 6 -3.6602 -6.8429 1.2763 17 1 -4.3143 -5.9741 1.2013 18 6 -3.3210 -7.1064 2.7479 19 6 -4.6059 -7.0030 3.5699 20 6 -5.6711 -7.9379 3.0011 21 1 -6.1429 -8.6036 3.7238 22 6 -6.5915 -7.3371 1.9274 23 6 -5.5858 -8.4207 1.5616 24 1 -6.0123 -9.4039 1.3626 25 6 -4.3731 -8.0721 0.7127 26 6 -0.1034 -2.7574 -0.0005 27 1 -0.4850 0.8401 0.0004 28 1 2.5628 -4.0326 0.6531 29 1 1.8311 -4.2347 -0.9992 30 1 0.3606 -4.0646 1.7295 31 1 0.2898 -6.1819 0.1575 32 1 -0.6058 -5.1422 -0.9760 33 1 -1.8410 -4.9677 1.5579 34 1 -2.8989 -8.1058 2.8528 35 1 -2.6028 -6.3643 3.0965 36 1 -4.3969 -7.2799 4.6033 37 1 -4.9723 -5.9770 3.5401 38 1 -6.3809 -6.3208 1.5943 39 1 -7.6451 -7.6154 1.9537 40 1 -3.6838 -8.9164 0.7064 41 1 -4.6961 -7.8639 -0.3073 42 1 -0.5272 -2.8730 -0.9981 43 1 -0.7169 -2.1390 0.6547 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031782318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:06 Heat of formation + Delta-G solvation = 3.509285 kcal Electronic energy + Delta-G solvation = -21541.306365 eV Core-core repulsion = 18394.247381 eV Total energy + Delta-G solvation = -3147.058984 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.43189 -40.03496 -39.28286 -35.76118 -34.38612 -33.93472 -31.73166 -30.56420 -27.87569 -26.55698 -25.83630 -24.22746 -23.56563 -22.17279 -21.45297 -20.52651 -19.40059 -18.77058 -18.28871 -17.16446 -16.98009 -16.51351 -16.34373 -15.72343 -15.34032 -15.17690 -14.98958 -14.64001 -14.54880 -14.23999 -13.93875 -13.40773 -13.28777 -13.10860 -12.99455 -12.88187 -12.53554 -12.44143 -12.24944 -12.09973 -11.91182 -11.80782 -11.59747 -11.49085 -11.25547 -10.88041 -10.72021 -10.60626 -10.50119 -10.01635 -8.92206 -7.91013 -5.24351 1.45577 1.47460 1.56061 1.66208 2.23047 2.47451 2.88321 3.29773 3.39775 3.59462 3.70088 3.79182 3.81135 4.01656 4.09562 4.10339 4.17064 4.35111 4.37080 4.49311 4.60069 4.62404 4.68817 4.77159 4.82091 4.85872 4.91053 4.99757 5.02802 5.09812 5.16322 5.22379 5.25445 5.30402 5.32977 5.37673 5.45569 5.47903 5.55132 5.65256 5.94254 6.59782 6.92373 7.27727 7.60522 8.56353 9.25792 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029812 B = 0.003151 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.986266 B = 8883.267986 C = 9352.606989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.237 4.237 8 H 0.083 0.917 9 N -0.645 5.645 10 C 0.125 3.875 11 C -0.113 4.113 12 C 0.141 3.859 13 N -0.715 5.715 14 C 0.514 3.486 15 O -0.587 6.587 16 C -0.102 4.102 17 H 0.108 0.892 18 C -0.106 4.106 19 C -0.087 4.087 20 C -0.145 4.145 21 H 0.113 0.887 22 C -0.187 4.187 23 C -0.145 4.145 24 H 0.106 0.894 25 C -0.065 4.065 26 C 0.165 3.835 27 H 0.248 0.752 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.413 0.587 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.009 0.991 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.439 -16.445 8.731 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.366 4.366 8 H 0.101 0.899 9 N -0.371 5.371 10 C -0.001 4.001 11 C -0.133 4.133 12 C 0.016 3.984 13 N -0.366 5.366 14 C 0.301 3.699 15 O -0.468 6.468 16 C -0.123 4.123 17 H 0.126 0.874 18 C -0.144 4.144 19 C -0.124 4.124 20 C -0.164 4.164 21 H 0.131 0.869 22 C -0.223 4.223 23 C -0.164 4.164 24 H 0.124 0.876 25 C -0.103 4.103 26 C 0.040 3.960 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.249 0.751 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.027 0.973 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.150 -16.615 8.093 21.584 hybrid contribution 0.269 1.421 -0.384 1.496 sum -10.881 -15.193 7.709 20.215 Atomic orbital electron populations 1.69996 1.06392 1.25604 1.58175 1.25626 0.96607 1.00845 1.02953 0.85075 0.77785 0.79086 0.77360 1.21626 1.21859 1.19188 1.19447 0.90893 0.83479 1.42743 0.89906 1.46366 1.03836 1.00704 1.86224 1.22706 0.95870 0.83556 0.97919 1.23402 0.96171 0.92857 1.00846 1.21166 0.85276 0.96931 0.94980 1.45996 1.23509 1.30398 1.36702 1.21158 0.85621 0.79582 0.83500 1.90661 1.75013 1.48528 1.32574 1.21386 0.93180 1.01150 0.96573 0.87375 1.21584 0.98723 1.02890 0.91206 1.21076 0.92759 0.99181 0.99424 1.22358 1.00403 1.02175 0.91415 0.86920 1.23237 0.96602 0.98320 1.04183 1.21798 0.98099 0.99572 0.96885 0.87553 1.20553 0.95262 0.96393 0.98103 1.22248 0.86976 0.91009 0.95787 0.94262 0.91907 0.93745 0.87587 0.90820 0.93245 0.75093 0.91379 0.90257 0.89749 0.90750 0.88990 0.88056 0.91855 0.92336 0.97300 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.28 11.38 21.65 0.25 -57.03 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 3 Si 0.98 45.68 29.55 68.60 2.03 47.71 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.24 -13.38 10.70 84.03 0.90 -12.48 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.64 -33.00 3.70 -716.67 -2.65 -35.65 16 10 C 0.12 4.86 8.50 86.48 0.74 5.59 16 11 C -0.11 -3.87 3.94 -10.12 -0.04 -3.91 16 12 C 0.14 4.23 5.53 86.38 0.48 4.71 16 13 N -0.71 -18.32 5.35 -463.06 -2.48 -20.79 16 14 C 0.51 13.92 7.15 87.66 0.63 14.55 16 15 O -0.59 -20.74 15.92 -3.02 -0.05 -20.79 16 16 C -0.10 -2.00 2.28 -11.48 -0.03 -2.02 16 17 H 0.11 1.92 7.11 -2.38 -0.02 1.90 16 18 C -0.11 -1.63 5.24 30.66 0.16 -1.47 16 19 C -0.09 -1.07 5.83 30.46 0.18 -0.90 16 20 C -0.15 -1.89 6.19 -10.98 -0.07 -1.96 16 21 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 22 C -0.19 -2.57 9.66 30.58 0.30 -2.28 16 23 C -0.15 -2.27 6.00 -11.64 -0.07 -2.34 16 24 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 25 C -0.07 -1.32 4.59 30.25 0.14 -1.19 16 26 C 0.17 7.67 7.07 86.49 0.61 8.28 16 27 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 30 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 1.69 7.83 -2.39 -0.02 1.67 16 33 H 0.41 8.78 7.88 -92.71 -0.73 8.05 16 34 H 0.07 1.12 8.04 -2.39 -0.02 1.10 16 35 H 0.08 1.10 7.33 -2.39 -0.02 1.08 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.88 8.06 -2.39 -0.02 0.86 16 38 H 0.09 1.34 7.26 -2.39 -0.02 1.32 16 39 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.06 1.44 7.93 -2.39 -0.02 1.42 16 41 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.01 0.45 7.89 -2.39 -0.02 0.43 16 43 H 0.05 2.35 7.15 -2.39 -0.02 2.33 16 Total: -1.00 -70.11 341.28 1.74 -68.37 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.26 Total: 16.98 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 4.39 Total: 1.21 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -4.88 Total: -113.48 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.05 Total: -20.79 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -70.11 1.74 -68.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031782318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.876 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds