Wall clock time and date at job start Tue Mar 31 2020 00:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99633 * 2 1 4 4 H 1.48501 * 109.47215 * 274.98203 * 3 2 1 5 5 H 1.48496 * 109.47359 * 34.98618 * 3 2 1 6 6 H 1.48506 * 109.46980 * 154.98751 * 3 2 1 7 7 C 1.38805 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00356 * 185.06810 * 7 2 1 9 9 N 1.36941 * 120.00142 * 5.06389 * 7 2 1 10 10 C 1.47579 * 134.49559 * 173.48106 * 9 7 2 11 11 C 1.53948 * 86.11791 * 155.35868 * 10 9 7 12 12 C 1.53004 * 113.73981 * 137.95182 * 11 10 9 13 13 N 1.46500 * 109.46723 * 176.92464 * 12 11 10 14 14 C 1.34780 * 119.99589 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00239 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99747 * 180.02562 * 14 13 12 17 17 C 1.51873 * 108.55915 * 55.95427 * 16 14 13 18 18 C 1.53025 * 110.75979 * 187.50641 * 17 16 14 19 19 C 1.51371 * 108.61674 * 274.28450 * 18 17 16 20 20 C 1.29523 * 120.36285 * 71.92247 * 19 18 17 21 21 C 1.51377 * 120.35682 * 359.97406 * 20 19 18 22 22 C 1.51853 * 108.65166 * 180.02562 * 16 14 13 23 23 C 1.47820 * 134.45346 * 353.35039 * 9 7 2 24 24 H 0.96997 * 119.99890 * 0.02562 * 1 2 3 25 25 H 1.09001 * 113.76960 * 41.05859 * 10 9 7 26 26 H 1.09000 * 113.76810 * 269.66253 * 10 9 7 27 27 H 1.08991 * 113.74228 * 269.15199 * 11 10 9 28 28 H 1.09001 * 109.47148 * 56.92579 * 12 11 10 29 29 H 1.09003 * 109.47224 * 296.92812 * 12 11 10 30 30 H 0.96994 * 120.00499 * 0.02562 * 13 12 11 31 31 H 1.09002 * 108.60469 * 298.01737 * 16 14 13 32 32 H 1.09001 * 109.20220 * 67.18541 * 17 16 14 33 33 H 1.09005 * 109.23510 * 307.84456 * 17 16 14 34 34 H 1.08998 * 109.61488 * 154.54401 * 18 17 16 35 35 H 1.08998 * 109.61346 * 34.02083 * 18 17 16 36 36 H 1.08004 * 119.81966 * 251.89649 * 19 18 17 37 37 H 1.07994 * 119.82529 * 179.97438 * 20 19 18 38 38 H 1.09004 * 109.61141 * 47.84655 * 21 20 19 39 39 H 1.09003 * 109.61224 * 168.18323 * 21 20 19 40 40 H 1.09008 * 109.22061 * 52.20522 * 22 16 14 41 41 H 1.08999 * 109.22172 * 292.86623 * 22 16 14 42 42 H 1.08997 * 113.76537 * 90.37665 * 23 9 7 43 43 H 1.08994 * 113.83489 * 318.91414 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4122 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0872 -1.2039 0.0832 9 7 1.3297 -2.3858 -0.1036 10 6 1.7287 -3.7985 -0.2549 11 6 0.3710 -4.1416 0.3846 12 6 -0.3479 -5.3131 -0.2875 13 7 -1.5875 -5.6055 0.4365 14 6 -2.3905 -6.6052 0.0215 15 8 -2.0867 -7.2631 -0.9511 16 6 -3.6658 -6.9056 0.7659 17 6 -4.5035 -5.6400 0.8201 18 6 -5.7238 -5.8354 1.7225 19 6 -6.8371 -6.4519 0.9028 20 6 -6.7660 -7.6897 0.5280 21 6 -5.5682 -8.5354 0.9045 22 6 -4.3634 -8.0696 0.0843 23 6 -0.1001 -2.7610 -0.1071 24 1 -0.4850 0.8400 -0.0004 25 1 2.5860 -4.0808 0.3562 26 1 1.8197 -4.1206 -1.2923 27 1 0.4076 -4.2319 1.4701 28 1 0.2971 -6.1917 -0.2733 29 1 -0.5828 -5.0516 -1.3193 30 1 -1.8306 -5.0792 1.2141 31 1 -3.4128 -7.1996 1.7846 32 1 -4.8380 -5.3881 -0.1863 33 1 -3.8957 -4.8235 1.2103 34 1 -6.0481 -4.8710 2.1133 35 1 -5.4662 -6.4995 2.5475 36 1 -7.6957 -5.8565 0.6293 37 1 -7.5654 -8.1208 -0.0562 38 1 -5.3555 -8.4161 1.9669 39 1 -5.7778 -9.5831 0.6889 40 1 -3.6607 -8.8960 -0.0230 41 1 -4.7015 -7.7566 -0.9035 42 1 -0.5474 -2.7776 -1.1009 43 1 -0.7002 -2.2164 0.6218 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032190679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:02 Heat of formation + Delta-G solvation = 15.335131 kcal Electronic energy + Delta-G solvation = -21574.225746 eV Core-core repulsion = 18427.679569 eV Total energy + Delta-G solvation = -3146.546177 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.23322 -38.34240 -37.62726 -34.42651 -32.90603 -32.16295 -31.90160 -28.86363 -26.53184 -25.26524 -24.78055 -24.05797 -22.14973 -21.32326 -19.99615 -18.92877 -18.19995 -17.22835 -16.68203 -16.39599 -15.80527 -15.18182 -14.91840 -14.64076 -14.21984 -13.81620 -13.56726 -13.44064 -13.25579 -13.08410 -12.65928 -12.34094 -12.22207 -11.85829 -11.45462 -11.41896 -11.33429 -10.99872 -10.90447 -10.79887 -10.73579 -10.55016 -10.48987 -9.99078 -9.76863 -9.61808 -9.43056 -9.15399 -8.81010 -8.76662 -6.87598 -5.79710 -3.10705 2.12105 2.78343 3.36671 3.38440 3.43709 3.45323 4.42185 4.44681 4.61142 4.65305 4.85960 4.93245 4.99696 5.14433 5.23319 5.29179 5.32007 5.35290 5.37692 5.47408 5.60308 5.62411 5.68085 5.81129 5.84034 5.93914 5.99510 6.06147 6.08226 6.22628 6.25820 6.36756 6.48802 6.57440 6.65844 6.73262 6.76984 7.20275 7.33298 7.54251 7.70105 7.96343 8.39233 9.03238 9.69399 10.59471 11.38136 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027868 B = 0.003307 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.512171 B = 8464.748600 C = 9268.969353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.613 5.613 10 C 0.128 3.872 11 C -0.154 4.154 12 C 0.129 3.871 13 N -0.722 5.722 14 C 0.510 3.490 15 O -0.548 6.548 16 C -0.102 4.102 17 C -0.109 4.109 18 C -0.090 4.090 19 C -0.158 4.158 20 C -0.159 4.159 21 C -0.092 4.092 22 C -0.094 4.094 23 C 0.172 3.828 24 H 0.253 0.747 25 H 0.045 0.955 26 H 0.036 0.964 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.401 0.599 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.029 0.971 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.249 -15.295 4.752 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.352 4.352 8 H 0.098 0.902 9 N -0.339 5.339 10 C 0.001 3.999 11 C -0.174 4.174 12 C 0.005 3.995 13 N -0.373 5.373 14 C 0.296 3.704 15 O -0.425 6.425 16 C -0.124 4.124 17 C -0.147 4.147 18 C -0.128 4.128 19 C -0.176 4.176 20 C -0.177 4.177 21 C -0.129 4.129 22 C -0.132 4.132 23 C 0.047 3.953 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.236 0.764 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.950 -15.392 4.070 19.907 hybrid contribution 0.291 1.317 0.135 1.355 sum -11.659 -14.075 4.205 18.754 Atomic orbital electron populations 1.69830 1.05052 1.25353 1.56436 1.24816 0.95687 0.97525 1.02367 0.86135 0.78751 0.83581 0.77537 1.21621 1.21696 1.20554 1.19040 0.90796 0.82114 1.43209 0.90221 1.45974 1.02451 1.00686 1.84808 1.22495 0.94080 0.86372 0.96943 1.23813 0.98276 0.95202 1.00073 1.21437 0.84212 0.97677 0.96138 1.46111 1.23525 1.34778 1.32872 1.20725 0.85078 0.79865 0.84725 1.90676 1.74513 1.49942 1.27401 1.21027 0.93350 0.97350 1.00649 1.21321 0.96092 0.95861 1.01388 1.20813 0.93565 1.01053 0.97326 1.22568 0.98983 0.96255 0.99817 1.22562 0.98522 0.95932 1.00647 1.20837 0.93219 0.98790 1.00057 1.21080 0.96085 0.96896 0.99166 1.22284 0.87977 0.87321 0.97744 0.93659 0.93725 0.94671 0.89290 0.92078 0.91496 0.76440 0.88974 0.91020 0.90758 0.90957 0.90874 0.87581 0.87671 0.91047 0.91324 0.90787 0.91174 0.95346 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.13 11.51 55.49 0.64 -26.49 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.11 29.56 -169.99 -5.02 17.08 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 8 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 9 N -0.61 -15.69 3.70 -177.68 -0.66 -16.35 16 10 C 0.13 2.58 8.51 -2.97 -0.03 2.55 16 11 C -0.15 -2.72 3.93 -89.69 -0.35 -3.08 16 12 C 0.13 2.02 5.51 -4.04 -0.02 2.00 16 13 N -0.72 -9.71 5.36 -60.29 -0.32 -10.03 16 14 C 0.51 7.10 7.14 -10.99 -0.08 7.02 16 15 O -0.55 -9.70 15.76 5.56 0.09 -9.62 16 16 C -0.10 -1.05 2.06 -92.93 -0.19 -1.24 16 17 C -0.11 -1.04 4.86 -27.29 -0.13 -1.17 16 18 C -0.09 -0.73 5.62 -27.54 -0.15 -0.88 16 19 C -0.16 -1.33 9.34 -35.29 -0.33 -1.66 16 20 C -0.16 -1.32 9.34 -35.28 -0.33 -1.65 16 21 C -0.09 -0.74 5.61 -27.54 -0.15 -0.90 16 22 C -0.09 -0.97 4.30 -27.31 -0.12 -1.09 16 23 C 0.17 3.93 6.99 -2.83 -0.02 3.91 16 24 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.16 7.88 -51.93 -0.41 0.75 16 30 H 0.40 4.61 7.48 -40.82 -0.31 4.30 16 31 H 0.09 0.78 7.90 -51.93 -0.41 0.37 16 32 H 0.07 0.78 7.86 -51.93 -0.41 0.38 16 33 H 0.07 0.69 6.99 -51.93 -0.36 0.33 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.54 6.68 -51.93 -0.35 0.19 16 36 H 0.11 0.82 8.06 -52.48 -0.42 0.39 16 37 H 0.11 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.07 0.53 6.68 -51.93 -0.35 0.18 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.82 7.78 -51.92 -0.40 0.41 16 41 H 0.07 0.82 7.86 -51.93 -0.41 0.42 16 42 H 0.03 0.69 7.92 -51.93 -0.41 0.27 16 43 H 0.07 1.68 7.37 -51.93 -0.38 1.30 16 LS Contribution 340.06 15.07 5.12 5.12 Total: -1.00 -32.53 340.06 -9.44 -41.97 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.12 Total: 1.27 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -2.17 Total: -2.96 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.34 Total: -52.87 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.53 -9.44 -41.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032190679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.307 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds