Wall clock time and date at job start Tue Mar 31 2020 00:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99633 * 2 1 4 4 H 1.48501 * 109.47215 * 274.98203 * 3 2 1 5 5 H 1.48496 * 109.47359 * 34.98618 * 3 2 1 6 6 H 1.48506 * 109.46980 * 154.98751 * 3 2 1 7 7 C 1.38805 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00356 * 185.06810 * 7 2 1 9 9 N 1.36941 * 120.00142 * 5.06389 * 7 2 1 10 10 C 1.47579 * 134.49559 * 173.48106 * 9 7 2 11 11 C 1.53948 * 86.11791 * 155.35868 * 10 9 7 12 12 C 1.53004 * 113.73981 * 137.95182 * 11 10 9 13 13 N 1.46500 * 109.46723 * 176.92464 * 12 11 10 14 14 C 1.34780 * 119.99589 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00239 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99747 * 180.02562 * 14 13 12 17 17 C 1.51873 * 108.55915 * 55.95427 * 16 14 13 18 18 C 1.53025 * 110.75979 * 187.50641 * 17 16 14 19 19 C 1.51371 * 108.61674 * 274.28450 * 18 17 16 20 20 C 1.29523 * 120.36285 * 71.92247 * 19 18 17 21 21 C 1.51377 * 120.35682 * 359.97406 * 20 19 18 22 22 C 1.51853 * 108.65166 * 180.02562 * 16 14 13 23 23 C 1.47820 * 134.45346 * 353.35039 * 9 7 2 24 24 H 0.96997 * 119.99890 * 0.02562 * 1 2 3 25 25 H 1.09001 * 113.76960 * 41.05859 * 10 9 7 26 26 H 1.09000 * 113.76810 * 269.66253 * 10 9 7 27 27 H 1.08991 * 113.74228 * 269.15199 * 11 10 9 28 28 H 1.09001 * 109.47148 * 56.92579 * 12 11 10 29 29 H 1.09003 * 109.47224 * 296.92812 * 12 11 10 30 30 H 0.96994 * 120.00499 * 0.02562 * 13 12 11 31 31 H 1.09002 * 108.60469 * 298.01737 * 16 14 13 32 32 H 1.09001 * 109.20220 * 67.18541 * 17 16 14 33 33 H 1.09005 * 109.23510 * 307.84456 * 17 16 14 34 34 H 1.08998 * 109.61488 * 154.54401 * 18 17 16 35 35 H 1.08998 * 109.61346 * 34.02083 * 18 17 16 36 36 H 1.08004 * 119.81966 * 251.89649 * 19 18 17 37 37 H 1.07994 * 119.82529 * 179.97438 * 20 19 18 38 38 H 1.09004 * 109.61141 * 47.84655 * 21 20 19 39 39 H 1.09003 * 109.61224 * 168.18323 * 21 20 19 40 40 H 1.09008 * 109.22061 * 52.20522 * 22 16 14 41 41 H 1.08999 * 109.22172 * 292.86623 * 22 16 14 42 42 H 1.08997 * 113.76537 * 90.37665 * 23 9 7 43 43 H 1.08994 * 113.83489 * 318.91414 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4122 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0872 -1.2039 0.0832 9 7 1.3297 -2.3858 -0.1036 10 6 1.7287 -3.7985 -0.2549 11 6 0.3710 -4.1416 0.3846 12 6 -0.3479 -5.3131 -0.2875 13 7 -1.5875 -5.6055 0.4365 14 6 -2.3905 -6.6052 0.0215 15 8 -2.0867 -7.2631 -0.9511 16 6 -3.6658 -6.9056 0.7659 17 6 -4.5035 -5.6400 0.8201 18 6 -5.7238 -5.8354 1.7225 19 6 -6.8371 -6.4519 0.9028 20 6 -6.7660 -7.6897 0.5280 21 6 -5.5682 -8.5354 0.9045 22 6 -4.3634 -8.0696 0.0843 23 6 -0.1001 -2.7610 -0.1071 24 1 -0.4850 0.8400 -0.0004 25 1 2.5860 -4.0808 0.3562 26 1 1.8197 -4.1206 -1.2923 27 1 0.4076 -4.2319 1.4701 28 1 0.2971 -6.1917 -0.2733 29 1 -0.5828 -5.0516 -1.3193 30 1 -1.8306 -5.0792 1.2141 31 1 -3.4128 -7.1996 1.7846 32 1 -4.8380 -5.3881 -0.1863 33 1 -3.8957 -4.8235 1.2103 34 1 -6.0481 -4.8710 2.1133 35 1 -5.4662 -6.4995 2.5475 36 1 -7.6957 -5.8565 0.6293 37 1 -7.5654 -8.1208 -0.0562 38 1 -5.3555 -8.4161 1.9669 39 1 -5.7778 -9.5831 0.6889 40 1 -3.6607 -8.8960 -0.0230 41 1 -4.7015 -7.7566 -0.9035 42 1 -0.5474 -2.7776 -1.1009 43 1 -0.7002 -2.2164 0.6218 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032190679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:02 Heat of formation + Delta-G solvation = -4.648429 kcal Electronic energy + Delta-G solvation = -21575.092298 eV Core-core repulsion = 18427.679569 eV Total energy + Delta-G solvation = -3147.412729 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.29454 -39.82055 -38.69078 -35.77223 -34.25399 -33.58138 -32.67166 -30.53430 -27.94178 -26.59691 -26.34598 -24.81928 -23.79361 -22.35554 -21.20498 -20.35507 -18.84614 -18.76213 -18.19301 -17.30445 -17.00477 -16.90891 -16.09932 -15.93541 -15.58596 -15.20718 -14.81146 -14.46994 -14.44905 -14.09313 -13.82401 -13.65029 -13.28636 -13.11775 -13.10286 -12.88488 -12.62336 -12.51530 -12.21595 -12.11725 -11.83198 -11.71812 -11.58926 -11.46629 -11.27597 -11.18598 -10.87728 -10.71485 -10.03203 -9.84165 -8.91240 -7.92903 -5.25012 1.45053 1.47115 1.47715 1.55768 1.67805 2.25712 2.47079 3.27711 3.39932 3.63818 3.69612 3.80946 3.88223 4.08874 4.15759 4.25308 4.31043 4.36151 4.49855 4.55082 4.60842 4.65543 4.74171 4.77865 4.86861 4.87957 4.93792 4.98052 5.09502 5.12207 5.21604 5.25007 5.27560 5.34609 5.42518 5.48909 5.55006 5.64678 5.85841 5.93064 6.10483 6.60785 6.91624 7.28930 7.59845 8.56396 9.24762 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027868 B = 0.003307 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.512171 B = 8464.748600 C = 9268.969353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.976 3.024 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.238 4.238 8 H 0.083 0.917 9 N -0.645 5.645 10 C 0.125 3.875 11 C -0.114 4.114 12 C 0.141 3.859 13 N -0.716 5.716 14 C 0.508 3.492 15 O -0.588 6.588 16 C -0.093 4.093 17 C -0.106 4.106 18 C -0.087 4.087 19 C -0.167 4.167 20 C -0.165 4.165 21 C -0.086 4.086 22 C -0.091 4.091 23 C 0.170 3.830 24 H 0.249 0.751 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.413 0.587 31 H 0.120 0.880 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.009 0.991 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.173 -16.189 6.229 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.805 3.195 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.366 4.366 8 H 0.101 0.899 9 N -0.372 5.372 10 C -0.001 4.001 11 C -0.134 4.134 12 C 0.016 3.984 13 N -0.367 5.367 14 C 0.296 3.704 15 O -0.469 6.469 16 C -0.114 4.114 17 C -0.144 4.144 18 C -0.124 4.124 19 C -0.185 4.185 20 C -0.183 4.183 21 C -0.123 4.123 22 C -0.129 4.129 23 C 0.044 3.956 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.125 0.875 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.249 0.751 31 H 0.138 0.862 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.027 0.973 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.867 -16.307 5.570 20.923 hybrid contribution 0.281 1.553 -0.373 1.621 sum -11.585 -14.754 5.197 19.466 Atomic orbital electron populations 1.70004 1.06415 1.25649 1.57897 1.25645 0.96594 1.00830 1.02853 0.85091 0.78013 0.79273 0.77166 1.21769 1.21891 1.19067 1.19442 0.91336 0.83546 1.42280 0.89874 1.46396 1.03821 1.01981 1.85006 1.22701 0.95959 0.83476 0.97925 1.23413 0.96180 0.92953 1.00806 1.21155 0.85173 0.97018 0.95042 1.46026 1.22829 1.34877 1.32979 1.21396 0.85800 0.78985 0.84238 1.90660 1.75559 1.51382 1.29295 1.21062 0.91336 0.97665 1.01367 1.21301 0.96784 0.95493 1.00812 1.20807 0.92527 1.01836 0.97214 1.22717 0.99355 0.96429 0.99973 1.22703 0.98833 0.96092 1.00674 1.20810 0.91923 0.99255 1.00349 1.21034 0.96775 0.96498 0.98610 1.22195 0.86832 0.90239 0.96303 0.94232 0.91892 0.93872 0.87519 0.90821 0.93412 0.75061 0.86189 0.92951 0.90410 0.90246 0.89435 0.87183 0.87070 0.89666 0.90305 0.91749 0.93336 0.97271 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.17 11.51 21.65 0.25 -56.92 16 2 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 3 Si 0.98 45.68 29.56 68.60 2.03 47.71 16 4 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.24 -13.39 10.70 84.03 0.90 -12.49 16 8 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 9 N -0.65 -33.00 3.70 -716.06 -2.65 -35.65 16 10 C 0.12 4.86 8.51 86.49 0.74 5.60 16 11 C -0.11 -3.88 3.93 -10.13 -0.04 -3.92 16 12 C 0.14 4.22 5.51 86.38 0.48 4.70 16 13 N -0.72 -18.25 5.36 -463.05 -2.48 -20.73 16 14 C 0.51 13.65 7.14 87.66 0.63 14.28 16 15 O -0.59 -20.78 15.76 -3.03 -0.05 -20.83 16 16 C -0.09 -1.76 2.06 -12.29 -0.03 -1.78 16 17 C -0.11 -1.88 4.86 30.23 0.15 -1.73 16 18 C -0.09 -1.21 5.62 30.07 0.17 -1.04 16 19 C -0.17 -2.53 9.34 27.37 0.26 -2.28 16 20 C -0.17 -2.48 9.34 27.37 0.26 -2.23 16 21 C -0.09 -1.22 5.61 30.07 0.17 -1.05 16 22 C -0.09 -1.78 4.30 30.22 0.13 -1.65 16 23 C 0.17 7.85 6.99 86.44 0.60 8.45 16 24 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 27 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.05 1.64 7.88 -2.39 -0.02 1.63 16 30 H 0.41 8.68 7.48 -92.71 -0.69 7.99 16 31 H 0.12 1.65 7.90 -2.39 -0.02 1.63 16 32 H 0.05 1.13 7.86 -2.39 -0.02 1.11 16 33 H 0.08 1.32 6.99 -2.38 -0.02 1.30 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 0.99 6.68 -2.39 -0.02 0.97 16 36 H 0.11 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.11 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.09 0.99 6.68 -2.38 -0.02 0.97 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.38 7.78 -2.38 -0.02 1.36 16 41 H 0.05 1.14 7.86 -2.39 -0.02 1.13 16 42 H 0.01 0.47 7.92 -2.39 -0.02 0.45 16 43 H 0.04 2.17 7.37 -2.39 -0.02 2.15 16 Total: -1.00 -70.82 340.06 2.26 -68.56 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.29 Total: 16.30 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 4.87 Total: 1.55 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -4.88 Total: -113.30 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.05 Total: -20.83 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -70.82 2.26 -68.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032190679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.916 kcal (2) G-P(sol) polarization free energy of solvation -70.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds