Wall clock time and date at job start Tue Mar 31 2020 00:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99790 * 2 1 4 4 H 1.48499 * 109.47381 * 239.99951 * 3 2 1 5 5 H 1.48501 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47188 * 119.99584 * 3 2 1 7 7 C 1.38809 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00196 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99775 * 0.02562 * 7 2 1 10 10 C 1.47871 * 126.94323 * 359.97438 * 9 7 2 11 11 C 1.55486 * 105.16710 * 181.92669 * 10 9 7 12 12 H 1.09002 * 116.03341 * 159.75704 * 11 10 9 13 13 C 1.57425 * 99.68902 * 32.86058 * 11 10 9 14 14 C 1.49290 * 126.94335 * 180.02562 * 9 7 2 15 15 H 1.09000 * 116.15511 * 15.83656 * 14 9 7 16 16 C 1.56020 * 104.08871 * 246.69511 * 14 9 7 17 17 N 1.47875 * 105.10341 * 288.76345 * 16 14 9 18 18 C 1.34772 * 126.94597 * 181.97812 * 17 16 14 19 19 O 1.21278 * 120.00091 * 185.29476 * 18 17 16 20 20 C 1.50705 * 119.99728 * 5.02096 * 18 17 16 21 21 C 1.53006 * 109.46983 * 206.14485 * 20 18 17 22 22 C 1.52999 * 109.46778 * 180.02562 * 21 20 18 23 23 C 1.52995 * 109.47120 * 60.00388 * 22 21 20 24 24 C 1.52994 * 109.47144 * 299.99660 * 23 22 21 25 25 C 1.52995 * 109.46968 * 86.14841 * 20 18 17 26 26 H 0.96993 * 120.00415 * 0.02562 * 1 2 3 27 27 H 1.08996 * 110.31548 * 300.91314 * 10 9 7 28 28 H 1.08996 * 110.31318 * 63.09748 * 10 9 7 29 29 H 1.08995 * 112.53899 * 191.70694 * 13 11 10 30 30 H 1.09004 * 112.32133 * 64.16995 * 13 11 10 31 31 H 1.09001 * 110.31238 * 169.86486 * 16 14 9 32 32 H 1.08994 * 110.40520 * 47.71972 * 16 14 9 33 33 H 1.08994 * 109.47243 * 326.14610 * 20 18 17 34 34 H 1.08994 * 109.47232 * 300.00131 * 21 20 18 35 35 H 1.09005 * 109.46672 * 60.00104 * 21 20 18 36 36 H 1.08999 * 109.47196 * 299.99571 * 22 21 20 37 37 H 1.09005 * 109.46641 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.47136 * 179.97438 * 23 22 21 39 39 H 1.09004 * 109.47142 * 60.00192 * 23 22 21 40 40 H 1.09002 * 109.47146 * 299.99925 * 24 23 22 41 41 H 1.09003 * 109.47299 * 180.02562 * 24 23 22 42 42 H 1.08992 * 109.47438 * 299.99858 * 25 20 18 43 43 H 1.09004 * 109.47142 * 60.00350 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1422 -2.5669 0.0005 11 6 -0.3646 -4.1049 0.0510 12 1 -1.3439 -4.4355 0.3971 13 6 0.8841 -4.5251 0.9126 14 6 1.9104 -3.7616 0.0016 15 1 2.9644 -3.8349 0.2695 16 6 1.5094 -4.3462 -1.3883 17 7 0.0526 -4.5842 -1.3004 18 6 -0.7395 -5.1199 -2.2501 19 8 -1.9394 -5.1704 -2.0814 20 6 -0.1346 -5.6505 -3.5244 21 6 -1.1733 -5.5890 -4.6462 22 6 -0.5594 -6.1283 -5.9397 23 6 -0.1208 -7.5789 -5.7299 24 6 0.9178 -7.6406 -4.6081 25 6 0.3044 -7.1011 -3.3150 26 1 -0.4850 0.8399 -0.0004 27 1 -0.5813 -2.0914 0.8775 28 1 -0.5737 -2.1535 -0.9110 29 1 1.0494 -5.6024 0.9111 30 1 0.8453 -4.1189 1.9234 31 1 2.0355 -5.2833 -1.5707 32 1 1.7288 -3.6295 -2.1796 33 1 0.7298 -5.0448 -3.7960 34 1 -2.0378 -6.1947 -4.3746 35 1 -1.4861 -4.5555 -4.7953 36 1 0.3052 -5.5229 -6.2115 37 1 -1.2993 -6.0840 -6.7390 38 1 0.3161 -7.9633 -6.6515 39 1 -0.9856 -8.1843 -5.4581 40 1 1.7825 -7.0352 -4.8800 41 1 1.2306 -8.6740 -4.4590 42 1 1.0443 -7.1451 -2.5159 43 1 -0.5602 -7.7069 -3.0435 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032257100.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:59 Heat of formation + Delta-G solvation = -2.480910 kcal Electronic energy + Delta-G solvation = -22891.056067 eV Core-core repulsion = 19743.737329 eV Total energy + Delta-G solvation = -3147.318738 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.26408 -38.73049 -36.94823 -33.61038 -31.82908 -30.78317 -30.67810 -28.93198 -28.49734 -25.20314 -24.13325 -22.85698 -22.59274 -20.62903 -19.83583 -19.55403 -18.34938 -17.20310 -16.26696 -15.86004 -15.26934 -14.94909 -14.42946 -14.15178 -14.06907 -13.90590 -13.47025 -13.05698 -12.76161 -12.29658 -12.19823 -12.12722 -11.84117 -11.63922 -11.35222 -11.22488 -11.14025 -11.00850 -10.85410 -10.77124 -10.69151 -10.55755 -10.42099 -10.24193 -10.12588 -10.08321 -9.62931 -9.20882 -8.68863 -7.95016 -6.92384 -5.76261 -3.11139 3.09969 3.37316 3.41533 3.43709 3.45014 4.42003 4.63457 4.66388 4.72355 4.98888 5.15939 5.20149 5.21970 5.25226 5.36615 5.41802 5.44707 5.50405 5.56793 5.59135 5.64235 5.77450 5.80399 5.91648 5.97372 6.02519 6.05063 6.13458 6.13974 6.22769 6.30529 6.31578 6.42060 6.44180 6.53794 6.60935 6.72670 7.42828 7.50860 7.72460 8.10106 8.17508 8.67385 9.10355 9.71388 10.40695 11.35668 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024002 B = 0.004741 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.288698 B = 5904.747468 C = 6170.126882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.597 5.597 10 C 0.174 3.826 11 C 0.097 3.903 12 H 0.112 0.888 13 C -0.150 4.150 14 C 0.140 3.860 15 H 0.106 0.894 16 C 0.085 3.915 17 N -0.606 5.606 18 C 0.531 3.469 19 O -0.557 6.557 20 C -0.100 4.100 21 C -0.101 4.101 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.104 4.104 26 H 0.254 0.746 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.835 -14.617 -7.066 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.322 5.322 10 C 0.049 3.951 11 C -0.005 4.005 12 H 0.129 0.871 13 C -0.189 4.189 14 C 0.031 3.969 15 H 0.124 0.876 16 C -0.040 4.040 17 N -0.340 5.340 18 C 0.320 3.680 19 O -0.436 6.436 20 C -0.122 4.122 21 C -0.139 4.139 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.154 4.154 25 C -0.142 4.142 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.086 -14.365 -7.050 16.137 hybrid contribution 0.474 1.065 -0.080 1.169 sum 2.560 -13.299 -7.130 15.306 Atomic orbital electron populations 1.69909 1.04963 1.25434 1.56259 1.24816 0.95661 0.97704 1.01999 0.86201 0.78447 0.83200 0.77876 1.21175 1.21614 1.21097 1.19000 0.90360 0.82117 1.44645 0.90225 1.45239 1.01357 0.99270 1.86286 1.21812 0.84647 0.87387 1.01266 1.24288 0.97569 0.97666 0.81006 0.87053 1.24185 0.96789 0.98796 0.99176 1.23170 0.96480 0.86347 0.90890 0.87643 1.23283 0.80050 0.98730 1.01960 1.49259 1.09373 1.59758 1.15561 1.20193 0.86283 0.77378 0.84183 1.90640 1.14655 1.58591 1.79678 1.21259 0.99844 0.97667 0.93398 1.21368 0.97645 1.01964 0.92933 1.21548 1.00609 0.96115 0.97353 1.21551 0.98997 0.96963 0.98256 1.21510 0.98309 1.00814 0.94750 1.21408 1.00903 0.94018 0.97894 0.93528 0.92717 0.93536 0.91692 0.89874 0.92934 0.91239 0.89458 0.90906 0.91691 0.91968 0.91867 0.92183 0.91969 0.91793 0.91866 0.91600 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.97 10.56 55.49 0.59 -26.38 16 2 C 0.00 -0.14 5.49 -17.43 -0.10 -0.23 16 3 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.21 10.37 -15.06 -0.16 -6.37 16 8 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.60 -14.41 3.02 -156.71 -0.47 -14.89 16 10 C 0.17 4.24 4.75 -1.97 -0.01 4.23 16 11 C 0.10 1.92 5.22 -62.63 -0.33 1.59 16 12 H 0.11 2.16 8.08 -51.93 -0.42 1.74 16 13 C -0.15 -2.55 6.82 -22.13 -0.15 -2.70 16 14 C 0.14 2.59 5.53 -62.58 -0.35 2.24 16 15 H 0.11 1.74 8.14 -51.93 -0.42 1.31 16 16 C 0.09 1.45 5.59 -1.67 -0.01 1.44 16 17 N -0.61 -11.33 2.95 -156.85 -0.46 -11.79 16 18 C 0.53 9.86 6.99 -10.98 -0.08 9.78 16 19 O -0.56 -12.16 16.48 5.56 0.09 -12.07 16 20 C -0.10 -1.43 2.13 -91.77 -0.20 -1.62 16 21 C -0.10 -1.37 4.75 -26.73 -0.13 -1.49 16 22 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 23 C -0.12 -1.11 5.92 -26.74 -0.16 -1.27 16 24 C -0.12 -1.10 5.92 -26.76 -0.16 -1.26 16 25 C -0.10 -1.22 5.18 -26.76 -0.14 -1.36 16 26 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.05 1.47 7.46 -51.93 -0.39 1.08 16 28 H 0.05 1.31 7.68 -51.93 -0.40 0.91 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.05 0.73 7.81 -51.93 -0.41 0.32 16 32 H 0.07 1.31 8.12 -51.93 -0.42 0.88 16 33 H 0.09 1.22 7.44 -51.93 -0.39 0.83 16 34 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.76 7.81 -51.93 -0.41 0.35 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 332.43 15.07 5.01 5.01 Total: -1.00 -31.18 332.43 -9.81 -40.99 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.43 Total: 0.85 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -2.11 Total: 1.59 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.35 Total: -53.06 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.18 -9.81 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032257100.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.507 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds