Wall clock time and date at job start Tue Mar 31 2020 00:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99790 * 2 1 4 4 H 1.48499 * 109.47381 * 239.99951 * 3 2 1 5 5 H 1.48501 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47188 * 119.99584 * 3 2 1 7 7 C 1.38809 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00196 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99775 * 0.02562 * 7 2 1 10 10 C 1.47871 * 126.94323 * 359.97438 * 9 7 2 11 11 C 1.55486 * 105.16710 * 181.92669 * 10 9 7 12 12 H 1.09002 * 116.03341 * 159.75704 * 11 10 9 13 13 C 1.57425 * 99.68902 * 32.86058 * 11 10 9 14 14 C 1.49290 * 126.94335 * 180.02562 * 9 7 2 15 15 H 1.09000 * 116.15511 * 15.83656 * 14 9 7 16 16 C 1.56020 * 104.08871 * 246.69511 * 14 9 7 17 17 N 1.47875 * 105.10341 * 288.76345 * 16 14 9 18 18 C 1.34772 * 126.94597 * 181.97812 * 17 16 14 19 19 O 1.21278 * 120.00091 * 185.29476 * 18 17 16 20 20 C 1.50705 * 119.99728 * 5.02096 * 18 17 16 21 21 C 1.53006 * 109.46983 * 206.14485 * 20 18 17 22 22 C 1.52999 * 109.46778 * 180.02562 * 21 20 18 23 23 C 1.52995 * 109.47120 * 60.00388 * 22 21 20 24 24 C 1.52994 * 109.47144 * 299.99660 * 23 22 21 25 25 C 1.52995 * 109.46968 * 86.14841 * 20 18 17 26 26 H 0.96993 * 120.00415 * 0.02562 * 1 2 3 27 27 H 1.08996 * 110.31548 * 300.91314 * 10 9 7 28 28 H 1.08996 * 110.31318 * 63.09748 * 10 9 7 29 29 H 1.08995 * 112.53899 * 191.70694 * 13 11 10 30 30 H 1.09004 * 112.32133 * 64.16995 * 13 11 10 31 31 H 1.09001 * 110.31238 * 169.86486 * 16 14 9 32 32 H 1.08994 * 110.40520 * 47.71972 * 16 14 9 33 33 H 1.08994 * 109.47243 * 326.14610 * 20 18 17 34 34 H 1.08994 * 109.47232 * 300.00131 * 21 20 18 35 35 H 1.09005 * 109.46672 * 60.00104 * 21 20 18 36 36 H 1.08999 * 109.47196 * 299.99571 * 22 21 20 37 37 H 1.09005 * 109.46641 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.47136 * 179.97438 * 23 22 21 39 39 H 1.09004 * 109.47142 * 60.00192 * 23 22 21 40 40 H 1.09002 * 109.47146 * 299.99925 * 24 23 22 41 41 H 1.09003 * 109.47299 * 180.02562 * 24 23 22 42 42 H 1.08992 * 109.47438 * 299.99858 * 25 20 18 43 43 H 1.09004 * 109.47142 * 60.00350 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1422 -2.5669 0.0005 11 6 -0.3646 -4.1049 0.0510 12 1 -1.3439 -4.4355 0.3971 13 6 0.8841 -4.5251 0.9126 14 6 1.9104 -3.7616 0.0016 15 1 2.9644 -3.8349 0.2695 16 6 1.5094 -4.3462 -1.3883 17 7 0.0526 -4.5842 -1.3004 18 6 -0.7395 -5.1199 -2.2501 19 8 -1.9394 -5.1704 -2.0814 20 6 -0.1346 -5.6505 -3.5244 21 6 -1.1733 -5.5890 -4.6462 22 6 -0.5594 -6.1283 -5.9397 23 6 -0.1208 -7.5789 -5.7299 24 6 0.9178 -7.6406 -4.6081 25 6 0.3044 -7.1011 -3.3150 26 1 -0.4850 0.8399 -0.0004 27 1 -0.5813 -2.0914 0.8775 28 1 -0.5737 -2.1535 -0.9110 29 1 1.0494 -5.6024 0.9111 30 1 0.8453 -4.1189 1.9234 31 1 2.0355 -5.2833 -1.5707 32 1 1.7288 -3.6295 -2.1796 33 1 0.7298 -5.0448 -3.7960 34 1 -2.0378 -6.1947 -4.3746 35 1 -1.4861 -4.5555 -4.7953 36 1 0.3052 -5.5229 -6.2115 37 1 -1.2993 -6.0840 -6.7390 38 1 0.3161 -7.9633 -6.6515 39 1 -0.9856 -8.1843 -5.4581 40 1 1.7825 -7.0352 -4.8800 41 1 1.2306 -8.6740 -4.4590 42 1 1.0443 -7.1451 -2.5159 43 1 -0.5602 -7.7069 -3.0435 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032257100.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:59 Heat of formation + Delta-G solvation = -20.614499 kcal Electronic energy + Delta-G solvation = -22891.842399 eV Core-core repulsion = 19743.737329 eV Total energy + Delta-G solvation = -3148.105070 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.74890 -40.06286 -38.20875 -35.46687 -33.46348 -31.96752 -31.66504 -30.52896 -30.21738 -26.98221 -25.63460 -24.25396 -23.49409 -21.98571 -21.41976 -20.64943 -19.92742 -18.83901 -17.90939 -17.40392 -16.71633 -16.31393 -15.96410 -15.60305 -15.13999 -15.05483 -14.91784 -14.49793 -13.96970 -13.80366 -13.48089 -13.39126 -13.19241 -13.10745 -13.04612 -12.81673 -12.67066 -12.36748 -12.21277 -12.16862 -12.10150 -12.03587 -11.86267 -11.56256 -11.53507 -11.35142 -11.01840 -10.81819 -10.53046 -9.53186 -8.91957 -7.84916 -5.21249 1.46107 1.49251 1.55390 1.63699 2.01615 2.48299 3.32245 3.35195 3.54246 3.70892 3.75301 3.82572 3.90158 4.03662 4.20018 4.22047 4.26429 4.32934 4.43297 4.55030 4.55749 4.60696 4.67804 4.72622 4.83026 4.92125 4.96567 5.01552 5.11369 5.14066 5.17146 5.24190 5.25405 5.26550 5.34694 5.39225 5.44024 5.53200 5.57438 5.63795 6.08950 6.69410 7.01687 7.18823 7.70425 8.41046 9.26170 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024002 B = 0.004741 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.288698 B = 5904.747468 C = 6170.126882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.072 4.072 3 Si 0.978 3.022 4 H -0.276 1.276 5 H -0.304 1.304 6 H -0.272 1.272 7 C -0.232 4.232 8 H 0.097 0.903 9 N -0.617 5.617 10 C 0.188 3.812 11 C 0.097 3.903 12 H 0.109 0.891 13 C -0.125 4.125 14 C 0.135 3.865 15 H 0.138 0.862 16 C 0.093 3.907 17 N -0.610 5.610 18 C 0.522 3.478 19 O -0.599 6.599 20 C -0.092 4.092 21 C -0.101 4.101 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.111 4.111 25 C -0.099 4.099 26 H 0.243 0.757 27 H 0.016 0.984 28 H -0.008 1.008 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.938 -17.232 -7.836 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.264 4.264 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.231 1.231 6 H -0.198 1.198 7 C -0.361 4.361 8 H 0.115 0.885 9 N -0.342 5.342 10 C 0.062 3.938 11 C -0.006 4.006 12 H 0.127 0.873 13 C -0.165 4.165 14 C 0.028 3.972 15 H 0.155 0.845 16 C -0.031 4.031 17 N -0.342 5.342 18 C 0.312 3.688 19 O -0.481 6.481 20 C -0.114 4.114 21 C -0.139 4.139 22 C -0.151 4.151 23 C -0.157 4.157 24 C -0.149 4.149 25 C -0.137 4.137 26 H 0.052 0.948 27 H 0.034 0.966 28 H 0.010 0.990 29 H 0.123 0.877 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.255 -17.030 -7.827 19.465 hybrid contribution -0.522 1.862 0.161 1.941 sum 4.733 -15.167 -7.666 17.641 Atomic orbital electron populations 1.70170 1.06740 1.25205 1.58751 1.25687 0.96354 1.01307 1.03093 0.85148 0.76976 0.78761 0.78427 1.20186 1.23060 1.19785 1.19532 0.91316 0.83127 1.42077 0.88501 1.45506 1.01344 1.01198 1.86107 1.21387 0.85114 0.90432 0.96876 1.24122 0.99221 0.94196 0.83104 0.87327 1.24081 0.93545 1.00880 0.97947 1.23621 0.98283 0.83166 0.92086 0.84456 1.23217 0.79163 1.00542 1.00204 1.49378 1.10320 1.59385 1.15134 1.21107 0.85874 0.76640 0.85133 1.90614 1.16625 1.60255 1.80568 1.21310 0.99703 0.99525 0.90820 1.21368 0.97426 1.00472 0.94681 1.21529 1.00861 0.97189 0.95490 1.21568 0.99109 0.95661 0.99327 1.21514 0.98252 1.01982 0.93136 1.21421 1.00903 0.91567 0.99792 0.94777 0.96596 0.98994 0.87663 0.90215 0.87889 0.93233 0.88749 0.92348 0.94131 0.91328 0.91012 0.90068 0.92232 0.90901 0.89869 0.90576 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.45 10.56 21.65 0.23 -59.22 16 2 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 3 Si 0.98 45.45 29.55 68.60 2.03 47.47 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.23 -12.34 10.37 84.03 0.87 -11.47 16 8 H 0.10 4.71 7.83 -2.91 -0.02 4.69 16 9 N -0.62 -29.88 3.02 -649.70 -1.96 -31.84 16 10 C 0.19 9.64 4.75 86.97 0.41 10.05 16 11 C 0.10 3.86 5.22 46.86 0.24 4.11 16 12 H 0.11 4.36 8.08 -2.39 -0.02 4.34 16 13 C -0.13 -3.93 6.82 33.57 0.23 -3.70 16 14 C 0.13 4.61 5.53 46.91 0.26 4.87 16 15 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 16 C 0.09 2.91 5.59 87.16 0.49 3.40 16 17 N -0.61 -22.36 2.95 -768.56 -2.27 -24.63 16 18 C 0.52 19.42 6.99 87.66 0.61 20.03 16 19 O -0.60 -27.10 16.48 -3.02 -0.05 -27.15 16 20 C -0.09 -2.52 2.13 -11.54 -0.02 -2.54 16 21 C -0.10 -2.73 4.75 30.60 0.15 -2.58 16 22 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 23 C -0.12 -1.81 5.92 30.59 0.18 -1.63 16 24 C -0.11 -1.65 5.92 30.58 0.18 -1.47 16 25 C -0.10 -2.02 5.18 30.58 0.16 -1.87 16 26 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16 27 H 0.02 0.92 7.46 -2.39 -0.02 0.90 16 28 H -0.01 -0.50 7.68 -2.39 -0.02 -0.52 16 29 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.10 2.28 7.81 -2.39 -0.02 2.27 16 32 H 0.05 1.78 8.12 -2.39 -0.02 1.76 16 33 H 0.09 2.45 7.44 -2.39 -0.02 2.43 16 34 H 0.06 1.72 7.87 -2.39 -0.02 1.70 16 35 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.41 7.81 -2.39 -0.02 1.39 16 43 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -73.06 332.43 3.35 -69.71 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.96 Total: 14.03 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 4.41 Total: 11.62 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -4.00 Total: -115.69 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.05 Total: -27.15 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.06 3.35 -69.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032257100.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.097 kcal (2) G-P(sol) polarization free energy of solvation -73.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds