Wall clock time and date at job start Tue Mar 31 2020 00:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00209 * 2 1 4 4 H 1.48499 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47381 * 299.99799 * 3 2 1 6 6 H 1.48500 * 109.47199 * 59.99814 * 3 2 1 7 7 C 1.38817 * 119.99658 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99797 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99716 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47480 * 34.99648 * 10 9 7 12 12 C 1.53001 * 109.47307 * 154.99343 * 10 9 7 13 13 C 1.53000 * 109.47444 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47132 * 300.00509 * 13 12 10 15 15 H 1.08991 * 109.46895 * 299.99712 * 14 13 12 16 16 N 1.46499 * 109.46916 * 179.97438 * 14 13 12 17 17 C 1.34777 * 120.00065 * 155.00329 * 16 14 13 18 18 O 1.21613 * 119.99910 * 359.97438 * 17 16 14 19 19 C 1.47104 * 120.00058 * 180.02562 * 17 16 14 20 20 C 1.32991 * 119.99556 * 180.27387 * 19 17 16 21 21 C 1.51397 * 136.32047 * 359.35044 * 20 19 17 22 22 C 1.53376 * 87.51951 * 206.05666 * 21 20 19 23 23 C 1.51410 * 136.31035 * 179.72208 * 20 19 17 24 24 C 1.52999 * 109.47179 * 59.99773 * 14 13 12 25 25 C 1.52996 * 109.47195 * 274.99778 * 10 9 7 26 26 H 0.97005 * 119.99661 * 0.02562 * 1 2 3 27 27 H 0.96994 * 120.00407 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.46714 * 60.00309 * 12 10 9 29 29 H 1.08993 * 109.47648 * 300.00405 * 12 10 9 30 30 H 1.08997 * 109.47191 * 180.02562 * 13 12 10 31 31 H 1.09006 * 109.46524 * 60.00151 * 13 12 10 32 32 H 0.97000 * 120.00380 * 334.99525 * 16 14 13 33 33 H 1.08002 * 119.99781 * 359.97438 * 19 17 16 34 34 H 1.09003 * 113.56158 * 320.63815 * 21 20 19 35 35 H 1.09001 * 113.56419 * 91.37121 * 21 20 19 36 36 H 1.09004 * 113.96909 * 220.28874 * 22 21 20 37 37 H 1.09000 * 113.60126 * 88.79485 * 22 21 20 38 38 H 1.09004 * 113.55954 * 268.62375 * 23 20 19 39 39 H 1.08999 * 113.56365 * 39.28895 * 23 20 19 40 40 H 1.09006 * 109.47500 * 59.99731 * 24 14 13 41 41 H 1.08993 * 109.47456 * 179.97438 * 24 14 13 42 42 H 1.09000 * 109.47187 * 299.99912 * 25 10 9 43 43 H 1.08997 * 109.47425 * 59.99853 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0005 11 1 2.9686 -3.5506 0.5899 12 6 1.1807 -4.7521 0.6103 13 6 1.9454 -6.0773 0.6097 14 6 2.3087 -6.4559 -0.8275 15 1 1.3978 -6.5618 -1.4166 16 7 3.0414 -7.7245 -0.8279 17 6 3.0323 -8.5076 -1.9248 18 8 2.4155 -8.1613 -2.9141 19 6 3.7676 -9.7817 -1.9251 20 6 3.7631 -10.5517 -3.0094 21 6 3.1442 -10.4951 -4.3899 22 6 3.2095 -12.0274 -4.4092 23 6 4.3691 -11.8796 -3.4117 24 6 3.1859 -5.3606 -1.4372 25 6 2.4217 -4.0357 -1.4364 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 0.2700 -4.8584 0.0209 29 1 0.9215 -4.4823 1.6340 30 1 1.3203 -6.8577 1.0437 31 1 2.8563 -5.9713 1.1989 32 1 3.5331 -8.0009 -0.0388 33 1 4.3150 -10.0894 -1.0464 34 1 2.1268 -10.1039 -4.3957 35 1 3.7839 -10.0223 -5.1352 36 1 3.5065 -12.4459 -5.3709 37 1 2.3256 -12.5072 -3.9889 38 1 5.3449 -11.7866 -3.8886 39 1 4.3574 -12.6233 -2.6149 40 1 4.0968 -5.2546 -0.8480 41 1 3.4451 -5.6305 -2.4609 42 1 1.5109 -4.1419 -2.0259 43 1 3.0466 -3.2554 -1.8708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034624228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:56 Heat of formation + Delta-G solvation = -4.046145 kcal Electronic energy + Delta-G solvation = -21240.179476 eV Core-core repulsion = 18092.792864 eV Total energy + Delta-G solvation = -3147.386612 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.07506 -38.84350 -37.67057 -34.76713 -33.00580 -31.31317 -30.38469 -30.26541 -27.29688 -26.06116 -24.06663 -23.16642 -22.29557 -21.24377 -20.47731 -19.52769 -18.37242 -17.17054 -16.82086 -16.29143 -15.77988 -15.19224 -14.76254 -14.70793 -14.24644 -13.84701 -13.67414 -13.51044 -12.98268 -12.76052 -12.57034 -12.23870 -12.03546 -11.95207 -11.76581 -11.39958 -11.30804 -11.00023 -10.82320 -10.78491 -10.70971 -10.60921 -10.12399 -10.06207 -9.73885 -9.70929 -9.52278 -9.44151 -8.87628 -8.79697 -6.90812 -5.72894 -3.01082 1.19489 3.16376 3.29712 3.45424 3.50986 3.53227 4.11191 4.20484 4.45167 4.62136 4.78785 4.88527 5.01216 5.10156 5.20228 5.31361 5.33348 5.37927 5.49789 5.55411 5.66140 5.70877 5.72883 5.78066 5.87754 5.92065 5.92872 5.99184 6.08571 6.28580 6.32827 6.34893 6.39173 6.53799 6.61888 6.72457 6.77604 7.03316 7.19327 7.58466 7.74280 8.30049 8.46130 9.57019 10.16091 10.50642 11.50033 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042864 B = 0.002787 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.070175 B =10045.798152 C =10247.838804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.120 4.120 13 C -0.118 4.118 14 C 0.146 3.854 15 H 0.087 0.913 16 N -0.723 5.723 17 C 0.547 3.453 18 O -0.541 6.541 19 C -0.199 4.199 20 C -0.065 4.065 21 C -0.106 4.106 22 C -0.143 4.143 23 C -0.109 4.109 24 C -0.123 4.123 25 C -0.132 4.132 26 H 0.254 0.746 27 H 0.383 0.617 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.397 0.603 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.540 -24.972 -2.968 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.068 3.932 11 H 0.064 0.936 12 C -0.159 4.159 13 C -0.157 4.157 14 C 0.042 3.958 15 H 0.105 0.895 16 N -0.373 5.373 17 C 0.336 3.664 18 O -0.420 6.420 19 C -0.220 4.220 20 C -0.067 4.067 21 C -0.143 4.143 22 C -0.180 4.180 23 C -0.145 4.145 24 C -0.162 4.162 25 C -0.173 4.173 26 H 0.064 0.936 27 H 0.217 0.783 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.231 0.769 33 H 0.149 0.851 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.206 -24.553 -3.655 26.145 hybrid contribution 0.468 0.846 0.451 1.067 sum 8.674 -23.708 -3.204 25.447 Atomic orbital electron populations 1.69675 1.05086 1.25440 1.58022 1.24744 0.95515 0.97661 1.03263 0.86137 0.78774 0.84282 0.77147 1.20602 1.21924 1.21942 1.19290 0.90991 0.84162 1.42170 0.91188 1.42442 1.05801 0.99826 1.88542 1.20235 0.94265 0.85949 0.92797 0.93632 1.21751 0.98951 0.93502 1.01727 1.21748 1.00788 0.98217 0.94954 1.21086 0.95462 0.81880 0.97375 0.89528 1.46053 1.53264 1.21880 1.16061 1.18415 0.80807 0.84114 0.83084 1.90785 1.43913 1.74088 1.33217 1.21640 1.05520 0.95303 0.99496 1.23461 0.93659 0.94379 0.95160 1.22218 1.02704 0.95571 0.93802 1.22734 0.98623 0.96915 0.99768 1.22352 0.98961 0.94001 0.99233 1.21882 0.98551 0.95365 1.00428 1.22211 0.99768 0.94541 1.00775 0.93626 0.78318 0.91994 0.91393 0.91931 0.91604 0.76918 0.85143 0.89439 0.88436 0.90420 0.89760 0.88171 0.90471 0.92395 0.92418 0.92526 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.57 13.06 55.49 0.72 -27.85 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.23 -6.58 9.93 -15.06 -0.15 -6.73 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.38 5.12 -53.43 -0.27 -18.66 16 10 C 0.18 3.52 2.77 -67.93 -0.19 3.33 16 11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 12 C -0.12 -1.97 5.39 -26.73 -0.14 -2.11 16 13 C -0.12 -1.51 5.39 -26.73 -0.14 -1.65 16 14 C 0.15 2.01 2.45 -67.93 -0.17 1.84 16 15 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 16 N -0.72 -8.27 5.07 -54.99 -0.28 -8.55 16 17 C 0.55 7.15 7.73 -12.66 -0.10 7.06 16 18 O -0.54 -9.17 14.82 5.27 0.08 -9.09 16 19 C -0.20 -1.96 10.03 -37.81 -0.38 -2.34 16 20 C -0.06 -0.61 6.93 -100.49 -0.70 -1.31 16 21 C -0.11 -1.01 6.98 -27.56 -0.19 -1.20 16 22 C -0.14 -0.96 8.17 -26.20 -0.21 -1.17 16 23 C -0.11 -0.69 7.96 -27.40 -0.22 -0.91 16 24 C -0.12 -1.90 5.49 -26.75 -0.15 -2.05 16 25 C -0.13 -2.47 5.50 -26.76 -0.15 -2.62 16 26 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.38 10.33 7.80 -40.82 -0.32 10.01 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.40 3.30 8.59 -40.82 -0.35 2.95 16 33 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.09 1.01 7.50 -51.93 -0.39 0.62 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -32.79 348.74 -9.83 -42.62 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -7.34 Total: 9.03 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -2.98 Total: -10.41 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.17 Total: -55.05 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.79 -9.83 -42.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034624228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.574 kcal (2) G-P(sol) polarization free energy of solvation -32.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds