Wall clock time and date at job start Tue Mar 31 2020 00:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00209 * 2 1 4 4 H 1.48499 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47381 * 299.99799 * 3 2 1 6 6 H 1.48500 * 109.47199 * 59.99814 * 3 2 1 7 7 C 1.38817 * 119.99658 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99797 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99716 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47480 * 34.99648 * 10 9 7 12 12 C 1.53001 * 109.47307 * 154.99343 * 10 9 7 13 13 C 1.53000 * 109.47444 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47132 * 300.00509 * 13 12 10 15 15 H 1.08991 * 109.46895 * 299.99712 * 14 13 12 16 16 N 1.46499 * 109.46916 * 179.97438 * 14 13 12 17 17 C 1.34777 * 120.00065 * 155.00329 * 16 14 13 18 18 O 1.21613 * 119.99910 * 359.97438 * 17 16 14 19 19 C 1.47104 * 120.00058 * 180.02562 * 17 16 14 20 20 C 1.32991 * 119.99556 * 180.27387 * 19 17 16 21 21 C 1.51397 * 136.32047 * 359.35044 * 20 19 17 22 22 C 1.53376 * 87.51951 * 206.05666 * 21 20 19 23 23 C 1.51410 * 136.31035 * 179.72208 * 20 19 17 24 24 C 1.52999 * 109.47179 * 59.99773 * 14 13 12 25 25 C 1.52996 * 109.47195 * 274.99778 * 10 9 7 26 26 H 0.97005 * 119.99661 * 0.02562 * 1 2 3 27 27 H 0.96994 * 120.00407 * 359.97438 * 9 7 2 28 28 H 1.09000 * 109.46714 * 60.00309 * 12 10 9 29 29 H 1.08993 * 109.47648 * 300.00405 * 12 10 9 30 30 H 1.08997 * 109.47191 * 180.02562 * 13 12 10 31 31 H 1.09006 * 109.46524 * 60.00151 * 13 12 10 32 32 H 0.97000 * 120.00380 * 334.99525 * 16 14 13 33 33 H 1.08002 * 119.99781 * 359.97438 * 19 17 16 34 34 H 1.09003 * 113.56158 * 320.63815 * 21 20 19 35 35 H 1.09001 * 113.56419 * 91.37121 * 21 20 19 36 36 H 1.09004 * 113.96909 * 220.28874 * 22 21 20 37 37 H 1.09000 * 113.60126 * 88.79485 * 22 21 20 38 38 H 1.09004 * 113.55954 * 268.62375 * 23 20 19 39 39 H 1.08999 * 113.56365 * 39.28895 * 23 20 19 40 40 H 1.09006 * 109.47500 * 59.99731 * 24 14 13 41 41 H 1.08993 * 109.47456 * 179.97438 * 24 14 13 42 42 H 1.09000 * 109.47187 * 299.99912 * 25 10 9 43 43 H 1.08997 * 109.47425 * 59.99853 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0005 11 1 2.9686 -3.5506 0.5899 12 6 1.1807 -4.7521 0.6103 13 6 1.9454 -6.0773 0.6097 14 6 2.3087 -6.4559 -0.8275 15 1 1.3978 -6.5618 -1.4166 16 7 3.0414 -7.7245 -0.8279 17 6 3.0323 -8.5076 -1.9248 18 8 2.4155 -8.1613 -2.9141 19 6 3.7676 -9.7817 -1.9251 20 6 3.7631 -10.5517 -3.0094 21 6 3.1442 -10.4951 -4.3899 22 6 3.2095 -12.0274 -4.4092 23 6 4.3691 -11.8796 -3.4117 24 6 3.1859 -5.3606 -1.4372 25 6 2.4217 -4.0357 -1.4364 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3880 0.0005 28 1 0.2700 -4.8584 0.0209 29 1 0.9215 -4.4823 1.6340 30 1 1.3203 -6.8577 1.0437 31 1 2.8563 -5.9713 1.1989 32 1 3.5331 -8.0009 -0.0388 33 1 4.3150 -10.0894 -1.0464 34 1 2.1268 -10.1039 -4.3957 35 1 3.7839 -10.0223 -5.1352 36 1 3.5065 -12.4459 -5.3709 37 1 2.3256 -12.5072 -3.9889 38 1 5.3449 -11.7866 -3.8886 39 1 4.3574 -12.6233 -2.6149 40 1 4.0968 -5.2546 -0.8480 41 1 3.4451 -5.6305 -2.4609 42 1 1.5109 -4.1419 -2.0259 43 1 3.0466 -3.2554 -1.8708 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034624228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:55 Heat of formation + Delta-G solvation = -25.107331 kcal Electronic energy + Delta-G solvation = -21241.092758 eV Core-core repulsion = 18092.792864 eV Total energy + Delta-G solvation = -3148.299894 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.09546 -39.74370 -38.83871 -36.32895 -34.61667 -32.67923 -31.71264 -31.56612 -28.84720 -26.66647 -25.72382 -24.31371 -23.60376 -22.46543 -21.53399 -20.95619 -19.35723 -18.93110 -17.88853 -17.31224 -16.84338 -16.41965 -16.00060 -15.71259 -15.50858 -15.37310 -15.14002 -14.91734 -14.57584 -14.01653 -13.46262 -13.33170 -13.17127 -13.09768 -12.91226 -12.86241 -12.63650 -12.42478 -12.30647 -12.10658 -12.03787 -11.89613 -11.67448 -11.49421 -11.41612 -11.20335 -10.86850 -10.63799 -10.25590 -9.86377 -9.00073 -7.93960 -5.22148 0.41088 1.46287 1.47301 1.57141 2.21689 2.36113 2.56322 3.38935 3.41770 3.60661 3.75493 3.82421 3.85869 3.90463 4.21244 4.27114 4.29389 4.36575 4.39897 4.53679 4.59096 4.62566 4.65204 4.75182 4.86548 4.86825 4.95590 4.99626 5.04777 5.10482 5.13057 5.24367 5.26042 5.29633 5.36146 5.48458 5.54291 5.57817 5.63407 5.70224 6.29022 6.69419 7.34196 7.36043 8.11736 8.34266 9.30049 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.042864 B = 0.002787 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.070175 B =10045.798152 C =10247.838804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.296 1.296 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.075 0.925 9 N -0.740 5.740 10 C 0.173 3.827 11 H 0.049 0.951 12 C -0.114 4.114 13 C -0.104 4.104 14 C 0.153 3.847 15 H 0.060 0.940 16 N -0.707 5.707 17 C 0.539 3.461 18 O -0.591 6.591 19 C -0.207 4.207 20 C -0.073 4.073 21 C -0.123 4.123 22 C -0.135 4.135 23 C -0.093 4.093 24 C -0.111 4.111 25 C -0.123 4.123 26 H 0.250 0.750 27 H 0.371 0.629 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.417 0.583 33 H 0.167 0.833 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.036 0.964 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.898 -27.367 -1.807 29.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.801 3.199 4 H -0.190 1.190 5 H -0.224 1.224 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.093 0.907 9 N -0.379 5.379 10 C 0.065 3.935 11 H 0.067 0.933 12 C -0.152 4.152 13 C -0.143 4.143 14 C 0.048 3.952 15 H 0.078 0.922 16 N -0.358 5.358 17 C 0.330 3.670 18 O -0.473 6.473 19 C -0.228 4.228 20 C -0.075 4.075 21 C -0.160 4.160 22 C -0.172 4.172 23 C -0.130 4.130 24 C -0.150 4.150 25 C -0.164 4.164 26 H 0.059 0.941 27 H 0.203 0.797 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.255 0.745 33 H 0.184 0.816 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.625 -27.003 -2.459 29.122 hybrid contribution -0.275 1.541 0.014 1.566 sum 10.349 -25.461 -2.444 27.593 Atomic orbital electron populations 1.69833 1.06624 1.25848 1.59990 1.25569 0.96396 1.01108 1.04168 0.85093 0.78281 0.79965 0.76583 1.18972 1.22364 1.21936 1.19664 0.91393 0.85283 1.40295 0.90667 1.42689 1.05458 1.01179 1.88557 1.20480 0.94565 0.85009 0.93442 0.93311 1.21643 0.98349 0.94222 1.01031 1.21644 1.01740 0.96531 0.94348 1.20802 0.94303 0.82471 0.97632 0.92198 1.45825 1.52794 1.20590 1.16621 1.19077 0.80306 0.85171 0.82489 1.90772 1.46113 1.75357 1.35060 1.21743 1.06000 0.93782 1.01229 1.23918 0.93248 0.95724 0.94623 1.22335 1.01001 0.97965 0.94692 1.22729 0.99120 0.94345 1.00996 1.22363 0.99129 0.92143 0.99330 1.21742 0.99006 0.93930 1.00322 1.22022 0.98912 0.95907 0.99530 0.94137 0.79749 0.93054 0.91319 0.89404 0.89260 0.74545 0.81568 0.92563 0.88524 0.88760 0.89669 0.86509 0.88527 0.90528 0.93707 0.94468 0.94109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 2 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 3 Si 0.97 47.09 29.55 68.60 2.03 49.11 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 6 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 7 C -0.23 -13.25 9.93 84.04 0.83 -12.42 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -38.20 5.12 -322.95 -1.65 -39.85 16 10 C 0.17 6.86 2.77 44.99 0.12 6.99 16 11 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 12 C -0.11 -3.61 5.39 30.59 0.16 -3.45 16 13 C -0.10 -2.38 5.39 30.59 0.16 -2.21 16 14 C 0.15 4.03 2.45 44.99 0.11 4.15 16 15 H 0.06 1.94 7.58 -2.39 -0.02 1.93 16 16 N -0.71 -14.67 5.07 -446.15 -2.26 -16.93 16 17 C 0.54 13.59 7.73 86.57 0.67 14.26 16 18 O -0.59 -20.60 14.82 -4.07 -0.06 -20.66 16 19 C -0.21 -3.61 10.03 23.43 0.23 -3.38 16 20 C -0.07 -1.25 6.93 -17.17 -0.12 -1.37 16 21 C -0.12 -2.32 6.98 30.06 0.21 -2.11 16 22 C -0.13 -1.54 8.17 30.94 0.25 -1.29 16 23 C -0.09 -0.88 7.96 30.16 0.24 -0.64 16 24 C -0.11 -3.35 5.49 30.58 0.17 -3.18 16 25 C -0.12 -4.69 5.50 30.58 0.17 -4.52 16 26 H 0.25 15.15 8.31 -92.70 -0.77 14.37 16 27 H 0.37 20.68 7.80 -92.71 -0.72 19.95 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.42 5.38 8.59 -92.71 -0.80 4.58 16 33 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 34 H 0.06 1.39 7.50 -2.39 -0.02 1.38 16 35 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 38 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -73.85 348.74 1.50 -72.35 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -0.52 Total: 30.03 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 3.69 Total: -13.44 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -3.63 Total: -117.39 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.06 Total: -20.66 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -73.85 1.50 -72.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034624228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.247 kcal (2) G-P(sol) polarization free energy of solvation -73.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds