Wall clock time and date at job start Tue Mar 31 2020 00:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00220 * 2 1 4 4 H 1.48499 * 109.47215 * 240.00363 * 3 2 1 5 5 H 1.48498 * 109.46882 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47368 * 120.00003 * 3 2 1 7 7 C 1.38816 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00205 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99467 * 359.97438 * 7 2 1 10 10 C 1.47579 * 134.49518 * 359.97438 * 9 7 2 11 11 C 1.53948 * 86.11658 * 204.63971 * 10 9 7 12 12 C 1.47589 * 134.48881 * 180.02562 * 9 7 2 13 13 H 1.08996 * 113.86782 * 269.66892 * 12 9 7 14 14 C 1.52996 * 113.77016 * 41.05621 * 12 9 7 15 15 N 1.46498 * 109.47059 * 281.49286 * 14 12 9 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 12 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 H 1.09003 * 115.56916 * 325.58956 * 18 16 15 20 20 C 1.52301 * 117.53844 * 111.43417 * 18 16 15 21 21 H 1.09001 * 115.91481 * 0.85158 * 20 18 16 22 22 C 1.50324 * 120.99507 * 218.00202 * 20 18 16 23 23 C 1.52868 * 110.12447 * 310.20706 * 22 20 18 24 24 C 1.53292 * 108.59095 * 304.91487 * 23 22 20 25 25 C 1.52879 * 108.58461 * 74.44451 * 24 23 22 26 26 C 1.52296 * 60.58872 * 107.41508 * 20 18 16 27 27 H 1.08998 * 117.30054 * 252.90626 * 26 20 18 28 28 H 0.97000 * 120.00215 * 359.97438 * 1 2 3 29 29 H 1.08997 * 113.76923 * 90.34101 * 10 9 7 30 30 H 1.09000 * 113.87137 * 318.95454 * 10 9 7 31 31 H 1.09003 * 113.74248 * 222.04253 * 11 10 9 32 32 H 1.09000 * 113.73699 * 90.74096 * 11 10 9 33 33 H 1.09004 * 109.47066 * 161.49553 * 14 12 9 34 34 H 1.08994 * 109.46974 * 41.49701 * 14 12 9 35 35 H 0.97001 * 120.00384 * 0.02562 * 15 14 12 36 36 H 1.09002 * 109.61811 * 189.95760 * 22 20 18 37 37 H 1.09005 * 109.30089 * 70.26175 * 22 20 18 38 38 H 1.09007 * 109.61444 * 185.18563 * 23 22 20 39 39 H 1.08996 * 109.76247 * 64.73607 * 23 22 20 40 40 H 1.09006 * 109.62318 * 314.71567 * 24 23 22 41 41 H 1.09003 * 109.61922 * 194.16883 * 24 23 22 42 42 H 1.08999 * 109.36090 * 185.26393 * 25 24 23 43 43 H 1.09008 * 109.35576 * 65.68306 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1033 -2.7574 0.0004 11 6 0.3475 -4.0832 0.6398 12 6 1.7201 -3.8102 -0.0005 13 1 1.8325 -4.2367 -0.9973 14 6 2.9024 -4.1221 0.9191 15 7 4.1496 -3.7189 0.2648 16 6 5.3282 -3.8943 0.8946 17 8 5.3567 -4.3906 2.0009 18 6 6.6108 -3.4738 0.2243 19 1 6.6372 -3.5948 -0.8587 20 6 7.3606 -2.2891 0.8190 21 1 6.9134 -1.8385 1.7050 22 6 8.0486 -1.2860 -0.0643 23 6 8.9295 -2.0029 -1.0874 24 6 9.8978 -2.9249 -0.3378 25 6 9.1212 -4.1422 0.1646 26 6 7.9211 -3.6941 0.9959 27 1 7.8462 -4.1411 1.9872 28 1 -0.4850 0.8400 0.0004 29 1 -0.5279 -2.8726 -0.9968 30 1 -0.7180 -2.1402 0.6557 31 1 -0.1591 -4.9598 0.2359 32 1 0.3603 -4.0628 1.7295 33 1 2.9298 -5.1921 1.1254 34 1 2.7893 -3.5745 1.8547 35 1 4.1269 -3.3217 -0.6198 36 1 8.6675 -0.6264 0.5440 37 1 7.2987 -0.6929 -0.5879 38 1 9.4943 -1.2688 -1.6622 39 1 8.3075 -2.5940 -1.7595 40 1 10.3298 -2.3915 0.5090 41 1 10.6904 -3.2494 -1.0121 42 1 9.7758 -4.7602 0.7790 43 1 8.7726 -4.7253 -0.6879 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038138100.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:13:53 Heat of formation + Delta-G solvation = 20.615622 kcal Electronic energy + Delta-G solvation = -22067.345196 eV Core-core repulsion = 18921.027998 eV Total energy + Delta-G solvation = -3146.317198 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.34765 -38.59342 -37.66997 -33.99634 -33.11853 -32.17213 -30.95997 -28.22957 -27.78237 -25.27171 -23.36256 -22.73465 -22.66364 -21.40210 -19.91708 -19.11500 -18.52336 -17.35173 -16.53455 -15.66366 -15.36556 -15.22861 -14.57229 -14.36595 -14.09798 -13.88901 -13.86148 -13.62328 -13.13919 -12.89034 -12.45512 -12.24356 -11.86511 -11.82050 -11.42106 -11.24033 -11.10019 -11.01651 -10.99061 -10.73687 -10.57064 -10.39387 -10.02253 -9.89921 -9.79256 -9.75740 -9.57501 -9.23944 -8.79556 -8.53582 -6.89408 -5.76206 -3.08572 2.80147 3.37523 3.42015 3.43432 3.48762 3.86934 4.42599 4.56598 4.63156 4.68974 4.89724 4.98459 5.05676 5.15618 5.25364 5.32324 5.40169 5.40932 5.48362 5.58500 5.62811 5.72473 5.81037 5.84248 5.90941 5.93438 5.98998 6.10714 6.12691 6.17990 6.19891 6.32720 6.32876 6.41138 6.62566 6.73004 6.93316 7.24948 7.41410 7.59198 7.95562 7.98667 8.62410 9.04658 9.71356 10.59791 11.40558 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.005196 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.784474 B = 5387.362891 C = 6745.556148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.123 3.877 15 N -0.710 5.710 16 C 0.539 3.461 17 O -0.554 6.554 18 C -0.186 4.186 19 H 0.120 0.880 20 C -0.110 4.110 21 H 0.101 0.899 22 C -0.092 4.092 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.090 4.090 26 C -0.113 4.113 27 H 0.115 0.885 28 H 0.253 0.747 29 H 0.026 0.974 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.403 0.597 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.781 -7.333 -2.337 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.034 3.966 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.001 4.001 15 N -0.359 5.359 16 C 0.325 3.675 17 O -0.433 6.433 18 C -0.207 4.207 19 H 0.138 0.862 20 C -0.129 4.129 21 H 0.119 0.881 22 C -0.129 4.129 23 C -0.161 4.161 24 C -0.156 4.156 25 C -0.127 4.127 26 C -0.131 4.131 27 H 0.133 0.867 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.237 0.763 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.773 -7.325 -1.545 16.562 hybrid contribution 0.244 1.196 -0.628 1.373 sum 15.017 -6.129 -2.173 16.364 Atomic orbital electron populations 1.69803 1.04962 1.25338 1.56642 1.24749 0.95603 0.97372 1.02627 0.86284 0.78580 0.83545 0.77884 1.21236 1.21580 1.21150 1.18900 0.90122 0.81918 1.43673 0.90421 1.46061 1.02264 0.98555 1.85953 1.22192 0.87946 0.89600 0.96876 1.23767 0.96184 0.98974 1.00569 1.22493 0.92377 0.87675 0.95628 0.93357 1.21748 0.82436 0.98605 0.97325 1.45901 1.05925 1.62732 1.21331 1.19631 0.84365 0.78114 0.85401 1.90646 1.87430 1.45186 1.20086 1.22468 0.91818 1.06543 0.99874 0.86214 1.21454 1.00684 0.89619 1.01138 0.88057 1.20608 0.98623 0.96759 0.96919 1.21637 0.97895 0.98791 0.97795 1.21576 0.97572 0.96507 0.99979 1.21077 0.95261 0.97440 0.98956 1.22342 0.91892 0.98592 1.00311 0.86720 0.93663 0.95609 0.90851 0.92813 0.90526 0.92288 0.91090 0.76321 0.90961 0.90908 0.91791 0.91766 0.91624 0.91972 0.91401 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 11.39 55.49 0.63 -26.40 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.22 -5.88 10.51 -15.06 -0.16 -6.04 16 8 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 9 N -0.60 -14.73 3.58 -170.77 -0.61 -15.34 16 10 C 0.16 3.67 7.51 -2.97 -0.02 3.64 16 11 C -0.16 -2.88 7.86 -25.82 -0.20 -3.08 16 12 C 0.13 2.44 4.33 -66.88 -0.29 2.15 16 13 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 14 C 0.12 2.29 5.53 -4.04 -0.02 2.27 16 15 N -0.71 -12.31 5.53 -60.30 -0.33 -12.64 16 16 C 0.54 9.36 7.61 -10.98 -0.08 9.27 16 17 O -0.55 -11.41 16.26 5.55 0.09 -11.32 16 18 C -0.19 -2.53 5.33 -91.79 -0.49 -3.02 16 19 H 0.12 1.42 7.31 -51.93 -0.38 1.04 16 20 C -0.11 -1.41 5.54 -92.67 -0.51 -1.93 16 21 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 22 C -0.09 -0.99 5.91 -28.13 -0.17 -1.15 16 23 C -0.12 -1.13 5.70 -26.65 -0.15 -1.28 16 24 C -0.12 -1.01 5.92 -26.64 -0.16 -1.17 16 25 C -0.09 -0.85 5.83 -26.94 -0.16 -1.01 16 26 C -0.11 -1.38 5.76 -90.79 -0.52 -1.90 16 27 H 0.11 1.57 7.66 -51.93 -0.40 1.18 16 28 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.88 7.16 -51.93 -0.37 1.51 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.40 6.60 8.47 -40.82 -0.35 6.25 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.60 7.15 -51.93 -0.37 0.23 16 40 H 0.07 0.56 8.04 -51.93 -0.42 0.14 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.61 8.06 -51.92 -0.42 0.19 16 LS Contribution 344.10 15.07 5.19 5.19 Total: -1.00 -31.39 344.10 -10.41 -41.80 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.32 Total: 5.25 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -3.03 Total: -3.53 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.31 Total: -54.38 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.39 -10.41 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038138100.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.417 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds